TCONS_00055714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055714
Unique NameTCONS_00055714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055714 ID=TCONS_00055714|Name=TCONS_00055714|organism=Clytia hemisphaerica|type=transcript|length=504bp
TTAGTCCTATAGGACTTACCAATTTCGGCCAAAATGTGTGTTTTTTTAAT
TCCGTTATTCAAGCATTGTATTCAGTCAATGCCTTTCGCAAGTTTGTTTG
TCAATTTGAAAATAGTGCTGAAAATGATCCCGTCAAAATTGTGATGAAAC
ACTTATTTACTACTATGACATCCTCTGATGCCCCAGTAGAAACATACCCA
TTATTGCCATATTTTGAGCTACCAGGTTACGAACATGCAAGGTTTGAACA
GTTTGATGCACACGAATGTCTCCTTCatattttggataaaatttcTCCAA
TAGAAAATGAGCAATCAGTGTTTAAGACTTCAGTTTTACAGTCAATATTA
TGCAAAAGTTGTCAGAATGTTTCTGATCAAACAGTGTTTGAACAGACATG
TCACATCAAATTTCCCAATAGGGTTGGTAATTCAATAAAGCAAGAGCTGG
CCAAGCTAGTAGATGACCCTTTTGGAGAGCCACTTGATGAATTATATCAG
TGCT
Run BLAST on NCBI

protein sequence of TCONS_00055714-protein

>TCONS_00055714-protein ID=TCONS_00055714-protein|Name=TCONS_00055714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
SPIGLTNFGQNVCFFNSVIQALYSVNAFRKFVCQFENSAENDPVKIVMKH
LFTTMTSSDAPVETYPLLPYFELPGYEHARFEQFDAHECLLHILDKISPI
ENEQSVFKTSVLQSILCKSCQNVSDQTVFEQTCHIKFPNRVGNSIKQELA
KLVDDPFGEPLDELYQC
Run BLAST on NCBI

transcript from alignment at scaffold_257:101257..101760

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055714 ID=TCONS_00055714|Name=TCONS_00055714|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at scaffold_257:101257..101760 (Clytia hemisphaerica)
AGCACTGATATAATTCATCAAGTGGCTCTCCAAAAGGGTCATCTACTAGC
TTGGCCAGCTCTTGCTTTATTGAATTACCAACCCTATTGGGAAATTTGAT
GTGACATGTCTGTTCAAACACTGTTTGATCAGAAACATTCTGACAACTTT
TGCATAATATTGACTGTAAAACTGAAGTCTTAAACACTGATTGCTCATTT
TCTATTGGAgaaattttatccaaaatatGAAGGAGACATTCGTGTGCATC
AAACTGTTCAAACCTTGCATGTTCGTAACCTGGTAGCTCAAAATATGGCA
ATAATGGGTATGTTTCTACTGGGGCATCAGAGGATGTCATAGTAGTAAAT
AAGTGTTTCATCACAATTTTGACGGGATCATTTTCAGCACTATTTTCAAA
TTGACAAACAAACTTGCGAAAGGCATTGACTGAATACAATGCTTGAATAA
CGGAATTAAAAAAACACACATTTTGGCCGAAATTGGTAAGTCCTATAGGA
CTAA

Coding sequence (CDS) from alignment at scaffold_257:101257..101760

>TCONS_00055714 ID=TCONS_00055714|Name=TCONS_00055714|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_257:101257..101760 (Clytia hemisphaerica)
GCACTGATATAATTCATCAAGTGGCTCTCCAAAAGGGTCATCTACTAGCT
TGGCCAGCTCTTGCTTTATTGAATTACCAACCCTATTGGGAAATTTGATG
TGACATGTCTGTTCAAACACTGTTTGATCAGAAACATTCTGACAACTTTT
GCATAATATTGACTGTAAAACTGAAGTCTTAAACACTGATTGCTCATTTT
CTATTGGAgaaattttatccaaaatatGAAGGAGACATTCGTGTGCATCA
AACTGTTCAAACCTTGCATGTTCGTAACCTGGTAGCTCAAAATATGGCAA
TAATGGGTATGTTTCTACTGGGGCATCAGAGGATGTCATAGTAGTAAATA
AGTGTTTCATCACAATTTTGACGGGATCATTTTCAGCACTATTTTCAAAT
TGACAAACAAACTTGCGAAAGGCATTGACTGAATACAATGCTTGAATAAC
GGAATTAAAAAAACACACATTTTGGCCGAAATTGGTAAGTCCTATAGGAC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035064XLOC_035064Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055714-proteinTCONS_00055714-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055714-exon-scaffold_257-1491911889:101257..101760TCONS_00055714-exon-scaffold_257-1491911889:101257..101760Clytia hemisphaericaexon
TCONS_00055714-exon-scaffold_257-1510915933:101257..101760TCONS_00055714-exon-scaffold_257-1510915933:101257..101760Clytia hemisphaericaexon
TCONS_00055714-exon-scaffold_257-1575043694:101257..101760TCONS_00055714-exon-scaffold_257-1575043694:101257..101760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:101257..101760 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0799835	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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