TCONS_00055716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055716
Unique NameTCONS_00055716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055716 ID=TCONS_00055716|Name=TCONS_00055716|organism=Clytia hemisphaerica|type=transcript|length=342bp
CAACACCAAGAAACACAAGTTTCTGGCAAGGTGAAACAAGCTTAGAAGGA
CTGATAGTGAAACCTAGGGATATCAGGAGTGAGTGAAGGGTATCAAAAGC
AGCTTGGCATTCCTGCCGAGTCCGATCAATGACCAGGAAATCATCAAGGT
ATACAATGATCAAAGGAAAGCCTCTTCTCTGCATCATGCGCCGAACACTC
TGGGTCAAACGATGAAATATACCAGGTGCGCTGCGTGCTCGAAAAGGGAG
ACGTGTGTCTTTTAGATACGTGTAGTGCTCATCCCCACTAAATTTCCACT
TCAAACCAAGAGCAGCATGGTTAGCAGGGTGGACAGGGACAG
Run BLAST on NCBI

protein sequence of TCONS_00055716-protein

>TCONS_00055716-protein ID=TCONS_00055716-protein|Name=TCONS_00055716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
VPVHPANHAALGLKWKFSGDEHYTYLKDTRLPFRARSAPGIFHRLTQSVR
RMMQRRGFPLIIVYLDDFLVIDRTRQECQAAFDTLHSLLISLGFTISPSK
LVSPCQKLVFLGV
Run BLAST on NCBI

transcript from alignment at scaffold_257:150743..151084

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055716 ID=TCONS_00055716|Name=TCONS_00055716|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_257:150743..151084 (Clytia hemisphaerica)
CTGTCCCTGTCCACCCTGCTAACCATGCTGCTCTTGGTTTGAAGTGGAAA
TTTAGTGGGGATGAGCACTACACGTATCTAAAAGACACACGTCTCCCTTT
TCGAGCACGCAGCGCACCTGGTATATTTCATCGTTTGACCCAGAGTGTTC
GGCGCATGATGCAGAGAAGAGGCTTTCCTTTGATCATTGTATACCTTGAT
GATTTCCTGGTCATTGATCGGACTCGGCAGGAATGCCAAGCTGCTTTTGA
TACCCTTCACTCACTCCTGATATCCCTAGGTTTCACTATCAGTCCTTCTA
AGCTTGTTTCACCTTGCCAGAAACTTGTGTTTCTTGGTGTTG

Coding sequence (CDS) from alignment at scaffold_257:150743..151084

>TCONS_00055716 ID=TCONS_00055716|Name=TCONS_00055716|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_257:150743..151084 (Clytia hemisphaerica)
GTCCCTGTCCACCCTGCTAACCATGCTGCTCTTGGTTTGAAGTGGAAATT
TAGTGGGGATGAGCACTACACGTATCTAAAAGACACACGTCTCCCTTTTC
GAGCACGCAGCGCACCTGGTATATTTCATCGTTTGACCCAGAGTGTTCGG
CGCATGATGCAGAGAAGAGGCTTTCCTTTGATCATTGTATACCTTGATGA
TTTCCTGGTCATTGATCGGACTCGGCAGGAATGCCAAGCTGCTTTTGATA
CCCTTCACTCACTCCTGATATCCCTAGGTTTCACTATCAGTCCTTCTAAG
CTTGTTTCACCTTGCCAGAAACTTGTGTTTCTTGGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035066XLOC_035066Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055716-proteinTCONS_00055716-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055716-exon-scaffold_257-1491911889:150743..151084TCONS_00055716-exon-scaffold_257-1491911889:150743..151084Clytia hemisphaericaexon
TCONS_00055716-exon-scaffold_257-1510915933:150743..151084TCONS_00055716-exon-scaffold_257-1510915933:150743..151084Clytia hemisphaericaexon
TCONS_00055716-exon-scaffold_257-1575043694:150743..151084TCONS_00055716-exon-scaffold_257-1575043694:150743..151084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:150743..151084 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29412	0.520244	0.499753	0	3.53936	1.10181	0.840273	2.88832	1.06491	0.978644	2.79244	0.619996	3.28629	0.645751	0.111075	0	0	0	0	0	0	0.122284	0	0	5.92841	2.71106	0	0	0.29607	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top