TCONS_00055720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055720
Unique NameTCONS_00055720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055720 ID=TCONS_00055720|Name=TCONS_00055720|organism=Clytia hemisphaerica|type=transcript|length=458bp
NTCTTTTTGAACTTTAATATTGTTGGTAGATGTGATATTAGCTTGTTGTG
TCCTTTGATTTTTTGGtatgtttttggttttgcttCTTACTtcttttacg
attttttttgttttttgtttttcttttgttgaatttATTGTTGATTTGGG
CCGTTGGTCTTTACCCTCTTGAGGCAGAAGCCGTTTTTTGATGACCCACG
GACTCGCCAGACTTCATCTGtttcactttgatttctttcCTTGGCTTCCT
GCAGAAGGTCTTTGAAGTCCTTCCTTTGAGTGGGGGTTAGATCTTCACAA
ATGCTGACACCTTTGTATTTGGCATTCCCTTTCAAGACATGTAGACTTCC
AAATaggctttctttttttttttcgctcTTAAAGGTAACAAGTATTGGTC
TACTCTTGTCGTCAGCTTTAGATCCGAGTCTCATCATATGTTTGGTGTTG
ATTTTCAC
Run BLAST on NCBI

protein sequence of TCONS_00055720-protein

>TCONS_00055720-protein ID=TCONS_00055720-protein|Name=TCONS_00055720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
VKINTKHMMRLGSKADDKSRPILVTFKSEKKKESLFGSLHVLKGNAKYKG
VSICEDLTPTQRKDFKDLLQEAKERNQSETDEVWRVRGSSKNGFCLKRVK
TNGPNQQ
Run BLAST on NCBI

transcript from alignment at scaffold_257:161872..162329

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055720 ID=TCONS_00055720|Name=TCONS_00055720|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at scaffold_257:161872..162329 (Clytia hemisphaerica)
GTGAAAATCAACACCAAACATATGATGAGACTCGGATCTAAAGCTGACGA
CAAGAGTAGACCAATACTTGTTACCTTTAAgagcgaaaaaaaaaaagaaa
gcctATTTGGAAGTCTACATGTCTTGAAAGGGAATGCCAAATACAAAGGT
GTCAGCATTTGTGAAGATCTAACCCCCACTCAAAGGAAGGACTTCAAAGA
CCTTCTGCAGGAAGCCAAGgaaagaaatcaaagtgaaaCAGATGAAGTCT
GGCGAGTCCGTGGGTCATCAAAAAACGGCTTCTGCCTCAAGAGGGTAAAG
ACCAACGGCCCAAATCAACAATaaattcaacaaaagaaaaacaaaaaaca
aaaaaaatcgtaaaagaAGTAAGaagcaaaaccaaaaacataCCAAAAAA
TCAAAGGACACAACAAGCTAATATCACATCTACCAACAATATTAAAGTTC
AAAAAGAN

Coding sequence (CDS) from alignment at scaffold_257:161872..162329

>TCONS_00055720 ID=TCONS_00055720|Name=TCONS_00055720|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_257:161872..162329 (Clytia hemisphaerica)
GTGAAAATCAACACCAAACATATGATGAGACTCGGATCTAAAGCTGACGA
CAAGAGTAGACCAATACTTGTTACCTTTAAgagcgaaaaaaaaaaagaaa
gcctATTTGGAAGTCTACATGTCTTGAAAGGGAATGCCAAATACAAAGGT
GTCAGCATTTGTGAAGATCTAACCCCCACTCAAAGGAAGGACTTCAAAGA
CCTTCTGCAGGAAGCCAAGgaaagaaatcaaagtgaaaCAGATGAAGTCT
GGCGAGTCCGTGGGTCATCAAAAAACGGCTTCTGCCTCAAGAGGGTAAAG
ACCAACGGCCCAAATCAACAATaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035070XLOC_035070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055720-exon-scaffold_257-1491911889:161872..162329TCONS_00055720-exon-scaffold_257-1491911889:161872..162329Clytia hemisphaericaexon
TCONS_00055720-exon-scaffold_257-1510915933:161872..162329TCONS_00055720-exon-scaffold_257-1510915933:161872..162329Clytia hemisphaericaexon
TCONS_00055720-exon-scaffold_257-1575043694:161872..162329TCONS_00055720-exon-scaffold_257-1575043694:161872..162329Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055720-proteinTCONS_00055720-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:161872..162329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13985	1.52835	2.25854	0.631322	1.53715	0.911006	0.915908	0.857462	0.480264	0.594884	0.433057	0.759132	0.947596	0.885679	0.242716	0.607767	0.21392	0.438522	1.21168	0.316985	0.275517	0.403163	0.163366	0	0.917853	1.36527	0	0.208504	0.948856	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top