TCONS_00055725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055725
Unique NameTCONS_00055725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055725 ID=TCONS_00055725|Name=TCONS_00055725|organism=Clytia hemisphaerica|type=transcript|length=1047bp
gtttatttggcacctaagagtatatagaataagattGTTTTATTATTATC
CCTATTTTTCATGTTAATGGGCAGGATTTGACTTGGAATACAATCCAGGC
TCTTTATGAGTACGATCTCAACAGGAATAGCTTGACACCTGGCTACCGCA
AATTATGCAAGCTGACACATGATCACATTTTTTTGGGACCACGAACTAGA
ATGAGGGTGAATCTTGCTGTTCAAGTTCTGAGTACTACAATGGCAGATAC
ACTGGAATATTGGAAGAAACCTTCAACTGATGAGTTGGTTAATTTCATCA
GATATTGTGACACTTTCTTTGATATGTTGAATGTAAATCATGTTTATGCT
GGTCAAATGGACAGGAAGCCAGCCTTGAAACCTATGAAGCTTGACGATAT
AGAGAGTAAAGAAAGGTTCACTTGGCTGAAAGACACATTCCTTGCGTACT
TCAATGATTGGGAGAAGGCTACCAAAAAGCTCAAACTACCTGCAAAAGAG
CAAGCAAAACATTGCATCAGTCAGGCTACTCTGAATGGTCTCAGAATCAC
AGTGCATTCTTTCTGCGAGATGGTCCCAGAATTACTCAGAATGGAAGGTG
TCAAATATTTCTTATCTGAAAAGTTGAATCAAGACCCTGTCGAGGAGCAT
TTTTCGAAACACAGGGCTAAAGGTGGTGTCGAAAACCCTCAATTAGAGCA
ATACATGATGACTGAGCGAAAAATGATTGTTGCAAAGTCAAAATGATCGT
CGCAATAAATGGTAACTTCCGTGGTAGAACCAAACGAAAGATTGTTATTG
ACATTGACGACAAAACTTTACTACCAAAGCGTCCAAAAGTACCAAAGAAA
TCAAATGAACAAAAACATTCATGAATACTATTTATACTATGGAATTATTT
TGTATCGTATATATTGTGTCAGATGGTTTATAAATCCtgtttttctgttg
tttttttttctttgattttaacATACCTACATacagaaaaaataaaacgt
gcacaGAGAAGGATTAGAATTTTTAAGAGGTCAATAAGGTCCACAAG
Run BLAST on NCBI

protein sequence of TCONS_00055725-protein

>TCONS_00055725-protein ID=TCONS_00055725-protein|Name=TCONS_00055725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MRVNLAVQVLSTTMADTLEYWKKPSTDELVNFIRYCDTFFDMLNVNHVYA
GQMDRKPALKPMKLDDIESKERFTWLKDTFLAYFNDWEKATKKLKLPAKE
QAKHCISQATLNGLRITVHSFCEMVPELLRMEGVKYFLSEKLNQDPVEEH
FSKHRAKGGVENPQLEQYMMTERKMIVAKSK
Run BLAST on NCBI

transcript from alignment at scaffold_258:189828..191780+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055725 ID=TCONS_00055725|Name=TCONS_00055725|organism=Clytia hemisphaerica|type=transcript|length=1953bp|location=Sequence derived from alignment at scaffold_258:189828..191780+ (Clytia hemisphaerica)
gtttatttggcacctaagagtatatagaataagattGTTTTATTATTATC
CCTATTTTTCATGTTAATGGGCAGGATTTGACTTGGAATACAATCCAGGC
TCTTTATGAGTACGATCTCAACAGGAATAGCTTGACACCTGGCTACCGCA
AATTATGCAAGCTGACACATGATCACATTTTTTTGGGACCACGAACTAGA
ATGAGGGTGAATCTTGCTGTTCAAGTGAGTGAAccttttgcttttatttt
aaaggaaaattgaaTTTGACTTGAAGTTTCTGGATTTGATATTAACAGCA
TTTTTGAACTtcaatttattattttgaattattgGTAATTACTAGTAATC
GTCCATAGGATAAGAAATCAGAAGGTCAAACTGGGTCAAAGTCTAAAAGA
TTATTCTTTATAATTTTCTGTCCAGGTTCTGAGTACTACAATGGCAGATA
CACTGGAATATTGGAAGAAACCTTCAACTGATGAGTTGGTTAATTTCATC
AGATATTGTGACACTTTCTTTGATATGTTGAATGTAAATCATGTTTATGC
TGGTCAAATGGACAGGAAGCCAGCCTTGAAACCTATGAAGCTTGACGATA
TAGAGAGTAAAGAAAGGTTCACTGTAAGCAAATCTTTATCTTATTTGTCA
TAATTGAAAATGGAGAAATATTTTATATCCATTGTTTTTGCCACATTTTA
GTGCTTTCAGCAGCCACTATATATTCCACCATATATTCCTTTCATGTTTA
ATGAATGAGACAAGGCTATTCTCAACttagttttattttattggattttt
tcttGGTAGATccattgatttttttctacattttagTGGCTGAAAGACAC
ATTCCTTGCGTACTTCAATGATTGGGAGAAGGCTACCAAAAAGCTCAAAC
TACCTGCAAAAGAGCAAGCAAAACATTGCATCAGTCAGGCTACTCTGAAT
GGTCTCAGAATCACAGGTAAAAATAAACACGAGTTTTAACTTGTCCTTTT
AATTGAAAGTAGTCTTAAGTGCGTAAGTATATGATACTTCTCCAATTCTA
GCGTTGCTTAGGCGAGATTCTAGTTGTTTTTGGATATACGAATGGTAACG
AAggaaacaatgtttttgtttgaaaataagTGACCACAACTCTGCTATTC
ATGTTGATTGCCCATTCTCAATTATattcctagtctacttcacttgagtc
agcgtcatcaaaaattatcaaaaagttcgGCCAAACTAGTCTCTGGTCTA
GGGTATCCATacatacaaaaaatgaaaactacCTAAGTCATACATAATTC
TCAATGTCAAGATGACAAAATTTAGCTTTATCAATGATTGGTTTATTAAT
ACCTGGATCAAGTACAGTCATTGAACCGTGTAAAGAACTGTCAAATCTTA
CCCAAATTAAAccccaaaatcaaaatatatgtTACTGTAcaatacttttt
ttattcagTGCATTCTTTCTGCGAGATGGTCCCAGAATTACTCAGAATGG
AAGGTGTCAAATATTTCTTATCTGAAAAGTTGAATCAAGACCCTGTCGAG
GAGCATTTTTCGAAACACAGGGCTAAAGGTGGTGTCGAAAACCCTCAATT
AGAGCAATACATGATGACTGAGCGAAAAATGATTGTTGCAAAGTCAAAAT
GATCGTCGCAATAAATGGTAACTTCCGTGGTAGAACCAAACGAAAGATTG
TTATTGACATTGACGACAAAACTTTACTACCAAAGCGTCCAAAAGTACCA
AAGAAATCAAATGAACAAAAACATTCATGAATACTATTTATACTATGGAA
TTATTTTGTATCGTATATATTGTGTCAGATGGTTTATAAATCCtgttttt
ctgttgtttttttttctttgattttaacATACCTACATacagaaaaaata
aaacgtgcacaGAGAAGGATTAGAATTTTTAAGAGGTCAATAAGGTCCAC
AAG

Coding sequence (CDS) from alignment at scaffold_258:189828..191780+

>TCONS_00055725 ID=TCONS_00055725|Name=TCONS_00055725|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_258:189828..191780+ (Clytia hemisphaerica)
ATGAGGGTGAATCTTGCTGTTCAAGTTCTGAGTACTACAATGGCAGATAC
ACTGGAATATTGGAAGAAACCTTCAACTGATGAGTTGGTTAATTTCATCA
GATATTGTGACACTTTCTTTGATATGTTGAATGTAAATCATGTTTATGCT
GGTCAAATGGACAGGAAGCCAGCCTTGAAACCTATGAAGCTTGACGATAT
AGAGAGTAAAGAAAGGTTCACTTGGCTGAAAGACACATTCCTTGCGTACT
TCAATGATTGGGAGAAGGCTACCAAAAAGCTCAAACTACCTGCAAAAGAG
CAAGCAAAACATTGCATCAGTCAGGCTACTCTGAATGGTCTCAGAATCAC
AGTGCATTCTTTCTGCGAGATGGTCCCAGAATTACTCAGAATGGAAGGTG
TCAAATATTTCTTATCTGAAAAGTTGAATCAAGACCCTGTCGAGGAGCAT
TTTTCGAAACACAGGGCTAAAGGTGGTGTCGAAAACCCTCAATTAGAGCA
ATACATGATGACTGAGCGAAAAATGATTGTTGCAAAGTCAAAATGAATGA
GGGTGAATCTTGCTGTTCAAGTTCTGAGTACTACAATGGCAGATACACTG
GAATATTGGAAGAAACCTTCAACTGATGAGTTGGTTAATTTCATCAGATA
TTGTGACACTTTCTTTGATATGTTGAATGTAAATCATGTTTATGCTGGTC
AAATGGACAGGAAGCCAGCCTTGAAACCTATGAAGCTTGACGATATAGAG
AGTAAAGAAAGGTTCACTTGGCTGAAAGACACATTCCTTGCGTACTTCAA
TGATTGGGAGAAGGCTACCAAAAAGCTCAAACTACCTGCAAAAGAGCAAG
CAAAACATTGCATCAGTCAGGCTACTCTGAATGGTCTCAGAATCACAGTG
CATTCTTTCTGCGAGATGGTCCCAGAATTACTCAGAATGGAAGGTGTCAA
ATATTTCTTATCTGAAAAGTTGAATCAAGACCCTGTCGAGGAGCATTTTT
CGAAACACAGGGCTAAAGGTGGTGTCGAAAACCCTCAATTAGAGCAATAC
ATGATGACTGAGCGAAAAATGATTGTTGCAAAGTCAAAATGAATGAGGGT
GAATCTTGCTGTTCAAGTTCTGAGTACTACAATGGCAGATACACTGGAAT
ATTGGAAGAAACCTTCAACTGATGAGTTGGTTAATTTCATCAGATATTGT
GACACTTTCTTTGATATGTTGAATGTAAATCATGTTTATGCTGGTCAAAT
GGACAGGAAGCCAGCCTTGAAACCTATGAAGCTTGACGATATAGAGAGTA
AAGAAAGGTTCACTTGGCTGAAAGACACATTCCTTGCGTACTTCAATGAT
TGGGAGAAGGCTACCAAAAAGCTCAAACTACCTGCAAAAGAGCAAGCAAA
ACATTGCATCAGTCAGGCTACTCTGAATGGTCTCAGAATCACAGTGCATT
CTTTCTGCGAGATGGTCCCAGAATTACTCAGAATGGAAGGTGTCAAATAT
TTCTTATCTGAAAAGTTGAATCAAGACCCTGTCGAGGAGCATTTTTCGAA
ACACAGGGCTAAAGGTGGTGTCGAAAACCCTCAATTAGAGCAATACATGA
TGACTGAGCGAAAAATGATTGTTGCAAAGTCAAAATGAATGAGGGTGAAT
CTTGCTGTTCAAGTTCTGAGTACTACAATGGCAGATACACTGGAATATTG
GAAGAAACCTTCAACTGATGAGTTGGTTAATTTCATCAGATATTGTGACA
CTTTCTTTGATATGTTGAATGTAAATCATGTTTATGCTGGTCAAATGGAC
AGGAAGCCAGCCTTGAAACCTATGAAGCTTGACGATATAGAGAGTAAAGA
AAGGTTCACTTGGCTGAAAGACACATTCCTTGCGTACTTCAATGATTGGG
AGAAGGCTACCAAAAAGCTCAAACTACCTGCAAAAGAGCAAGCAAAACAT
TGCATCAGTCAGGCTACTCTGAATGGTCTCAGAATCACAGTGCATTCTTT
CTGCGAGATGGTCCCAGAATTACTCAGAATGGAAGGTGTCAAATATTTCT
TATCTGAAAAGTTGAATCAAGACCCTGTCGAGGAGCATTTTTCGAAACAC
AGGGCTAAAGGTGGTGTCGAAAACCCTCAATTAGAGCAATACATGATGAC
TGAGCGAAAAATGATTGTTGCAAAGTCAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035075XLOC_035075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055725-exon-scaffold_258-1491911889:189828..190051TCONS_00055725-exon-scaffold_258-1491911889:189828..190051Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1510915933:189828..190051TCONS_00055725-exon-scaffold_258-1510915933:189828..190051Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1575043694:189828..190051TCONS_00055725-exon-scaffold_258-1575043694:189828..190051Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1491911889:190253..190450TCONS_00055725-exon-scaffold_258-1491911889:190253..190450Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1510915933:190253..190450TCONS_00055725-exon-scaffold_258-1510915933:190253..190450Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1575043694:190253..190450TCONS_00055725-exon-scaffold_258-1575043694:190253..190450Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1491911889:190664..190793TCONS_00055725-exon-scaffold_258-1491911889:190664..190793Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1510915933:190664..190793TCONS_00055725-exon-scaffold_258-1510915933:190664..190793Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1575043694:190664..190793TCONS_00055725-exon-scaffold_258-1575043694:190664..190793Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1491911889:191286..191780TCONS_00055725-exon-scaffold_258-1491911889:191286..191780Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1510915933:191286..191780TCONS_00055725-exon-scaffold_258-1510915933:191286..191780Clytia hemisphaericaexon
TCONS_00055725-exon-scaffold_258-1575043694:191286..191780TCONS_00055725-exon-scaffold_258-1575043694:191286..191780Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055725-proteinTCONS_00055725-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:189828..191780 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63889	1.74867	0.727793	0.193477	9.66639	6.294	6.91376	8.01138	2.72373	4.76461	4.17278	3.4762	5.23822	4.40489	2.38688	3.3592	2.95118	3.24551	3.26352	6.38262	4.638	4.72384	2.11601	2.79163	3.61818	3.36733	6.91565	5.71279	4.63162	4.9825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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