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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055743 ID=TCONS_00055743|Name=TCONS_00055743|organism=Clytia hemisphaerica|type=transcript|length=1677bp
TGTTTCCAACAACGTGAACATCGTCAGCAAGAATAATAACAATTCCTTGC
TGAATTAAATCTCCAAAAATACGACTCATTAGTTCTTGTAAATGTTCAGA
CGAGTCGGGCATACCCATAGCAGATCGAGTATACACACGTAGTCCCTTGA
ATGGTGTGACAGTTCCGAGGTATTTCATAGAGGACTTTGCAACGGGAATT
TGAAAAAAGCTTTTCGTCAAGTCAGCTTTAATAAGATACTTCCATTTAGA
GAGTTTTCGTAAAACATCATTACAAGTGTTGGAAACCGTTGGAAGTATTT
TCGTATACTGTCCGAGATTATTAAATGCTGTAACAAGTCTATAACCTCCG
GAAGGTTTTTCGGTTAGGAAGCTAGGAGAAACATACTCTACATCGACGTT
AACATCTTCTGGTTTGGCAAGGACGCCCAATTGTTCAAGCTTATCAGCTT
CTTCttgtaaagtttgtaaattGGACTGTTTGTAAAAGGGAAGCTTGCCC
TTCTGTGGTGGAGGTTGGACGTTACCGATGTTGACTTTGGCANTTGTAAA
AGGGAAGCTTGTCTTTCTGTGGTGGAGGTTGGACGTTACCGATGTTGACT
TTGGCACGGATGGTTCCACTGTGGTCGTTGTAAGCACCAAACACAGGATT
GAAGACAGAATCGTACGTTCGATGGAGGTTATGGAACGACTGGCGTTGTT
CGGTGTTGAGCTGGTGGTCTGGATCGAGCGAAACGGCATCAGAGAAGAGT
GACGTGAGAGGTGGACGGCTACCGGCAGACTGTATTGTAGGTGCTGGATG
ATGGTGTTGATGCAGCGAAGGGAAGTCAGATGGTGTAATGACTCTCCGTA
TCATAGCGAAATGTTGCGACTTGGAAAGCGAGATTGCTTCTCCGGAGTTG
TTGGGGATACGAATGTTGCCATCAATGACTCTGGAGATGTTAGGTTCTGG
CCATGATCCATTTAGTGGTGATGAACGATGTGGCTCGATCGAGATTTCGC
CTTCATAGCATTTCAGTGATTCGCTACTGAATTCTAGGTATTCTCCTGGA
AGAACGACATGACTAACGTCACTGCGAAGGATAAACGATTCTGTTCTGAA
TATGTCTGATTGTCTGGTTGGTTTAGTGCCGTACGCAAAATTGGATGATC
CAATGGTGATCGTTTCTCGTTTGAGATGACCTGTATATCGTTCTCTTTAC
AGAAGGGTACGCCGGCAAGTAAGTCGCAGTCAattgtatcaactactaac
gctGTAACTGGTAATGGAATGTCACCAAAATTTAGTTGTATCCTTACCTC
TCCGtgtatttttaaagaactcttatcTACGGAACGTGCGGAGTGTCTGG
TTGGTTGGATAACGATGCCAGAGCGTTTGACGAAAGATCTCGAGATGAGT
GATGAGGTATCGCCTGTGTCGATCACAATATGAGCTGGATGATGTTGGTA
GAATGCATGGAAGTAAGGGGAAGAATCACATTGGACTTTTTGTACTGTAG
ACTCTGGCGTGACTTGAAATTGATCACTTTCGAAATGTTCTGCTTCCTGG
GGTACATCATCAGAAACGTCAACGGTTAGTGCGTCagcgattttcaattt
ttcaaattgggACAAAAAATGACATCCGGCAATGTCGTGACCCTGATGAT
TCCTTCCAGCTGATTTGCAGAGAATGC Run BLAST on NCBI protein sequence of TCONS_00055743-protein >TCONS_00055743-protein ID=TCONS_00055743-protein|Name=TCONS_00055743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MPFRSIQTTSSTPNNASRSITSIERTILSSILCLVLTTTTVEPSVPKSTS
VTSNLHHRKTSFPFTXAKVNIGNVQPPPQKGKLPFYKQSNLQTLQEEADK
LEQLGVLAKPEDVNVDVEYVSPSFLTEKPSGGYRLVTAFNNLGQYTKILP
TVSNTCNDVLRKLSKWKYLIKADLTKSFFQIPVAKSSMKYLGTVTPFKGL
RVYTRSAMGMPDSSEHLQELMSRIFGDLIQQGIVIILADDVHVVGN Run BLAST on NCBI transcript from alignment at scaffold_258:27406..29082 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055743 ID=TCONS_00055743|Name=TCONS_00055743|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at scaffold_258:27406..29082 (Clytia hemisphaerica)
GCATTCTCTGCAAATCAGCTGGAAGGAATCATCAGGGTCACGACATTGCC
GGATGTCATTTTTTGTcccaatttgaaaaattgaaaatcgctGACGCACT
AACCGTTGACGTTTCTGATGATGTACCCCAGGAAGCAGAACATTTCGAAA
GTGATCAATTTCAAGTCACGCCAGAGTCTACAGTACAAAAAGTCCAATGT
GATTCTTCCCCTTACTTCCATGCATTCTACCAACATCATCCAGCTCATAT
TGTGATCGACACAGGCGATACCTCATCACTCATCTCGAGATCTTTCGTCA
AACGCTCTGGCATCGTTATCCAACCAACCAGACACTCCGCACGTTCCGTA
gataagagttctttaaaaatacaCGGAGAGGTAAGGATACAACTAAATTT
TGGTGACATTCCATTACCAGTTACagcgttagtagttgatacaatTGACT
GCGACTTACTTGCCGGCGTACCCTTCTGTAAAGAGAACGATATACAGGTC
ATCTCAAACGAGAAACGATCACCATTGGATCATCCAATTTTGCGTACGGC
ACTAAACCAACCAGACAATCAGACATATTCAGAACAGAATCGTTTATCCT
TCGCAGTGACGTTAGTCATGTCGTTCTTCCAGGAGAATACCTAGAATTCA
GTAGCGAATCACTGAAATGCTATGAAGGCGAAATCTCGATCGAGCCACAT
CGTTCATCACCACTAAATGGATCATGGCCAGAACCTAACATCTCCAGAGT
CATTGATGGCAACATTCGTATCCCCAACAACTCCGGAGAAGCAATCTCGC
TTTCCAAGTCGCAACATTTCGCTATGATACGGAGAGTCATTACACCATCT
GACTTCCCTTCGCTGCATCAACACCATCATCCAGCACCTACAATACAGTC
TGCCGGTAGCCGTCCACCTCTCACGTCACTCTTCTCTGATGCCGTTTCGC
TCGATCCAGACCACCAGCTCAACACCGAACAACGCCAGTCGTTCCATAAC
CTCCATCGAACGTACGATTCTGTCTTCAATCCTGTGTTTGGTGCTTACAA
CGACCACAGTGGAACCATCCGTGCCAAAGTCAACATCGGTAACGTCCAAC
CTCCACCACAGAAAGACAAGCTTCCCTTTTACAANTGCCAAAGTCAACAT
CGGTAACGTCCAACCTCCACCACAGAAGGGCAAGCTTCCCTTTTACAAAC
AGTCCaatttacaaactttacaaGAAGAAGCTGATAAGCTTGAACAATTG
GGCGTCCTTGCCAAACCAGAAGATGTTAACGTCGATGTAGAGTATGTTTC
TCCTAGCTTCCTAACCGAAAAACCTTCCGGAGGTTATAGACTTGTTACAG
CATTTAATAATCTCGGACAGTATACGAAAATACTTCCAACGGTTTCCAAC
ACTTGTAATGATGTTTTACGAAAACTCTCTAAATGGAAGTATCTTATTAA
AGCTGACTTGACGAAAAGCTTTTTTCAAATTCCCGTTGCAAAGTCCTCTA
TGAAATACCTCGGAACTGTCACACCATTCAAGGGACTACGTGTGTATACT
CGATCTGCTATGGGTATGCCCGACTCGTCTGAACATTTACAAGAACTAAT
GAGTCGTATTTTTGGAGATTTAATTCAGCAAGGAATTGTTATTATTCTTG
CTGACGATGTTCACGTTGTTGGAAACA Coding sequence (CDS) from alignment at scaffold_258:27406..29082 >TCONS_00055743 ID=TCONS_00055743|Name=TCONS_00055743|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_258:27406..29082 (Clytia hemisphaerica)
ATGCCGTTTCGCTCGATCCAGACCACCAGCTCAACACCGAACAACGCCAG
TCGTTCCATAACCTCCATCGAACGTACGATTCTGTCTTCAATCCTGTGTT
TGGTGCTTACAACGACCACAGTGGAACCATCCGTGCCAAAGTCAACATCG
GTAACGTCCAACCTCCACCACAGAAAGACAAGCTTCCCTTTTACAANTGC
CAAAGTCAACATCGGTAACGTCCAACCTCCACCACAGAAGGGCAAGCTTC
CCTTTTACAAACAGTCCaatttacaaactttacaaGAAGAAGCTGATAAG
CTTGAACAATTGGGCGTCCTTGCCAAACCAGAAGATGTTAACGTCGATGT
AGAGTATGTTTCTCCTAGCTTCCTAACCGAAAAACCTTCCGGAGGTTATA
GACTTGTTACAGCATTTAATAATCTCGGACAGTATACGAAAATACTTCCA
ACGGTTTCCAACACTTGTAATGATGTTTTACGAAAACTCTCTAAATGGAA
GTATCTTATTAAAGCTGACTTGACGAAAAGCTTTTTTCAAATTCCCGTTG
CAAAGTCCTCTATGAAATACCTCGGAACTGTCACACCATTCAAGGGACTA
CGTGTGTATACTCGATCTGCTATGGGTATGCCCGACTCGTCTGAACATTT
ACAAGAACTAATGAGTCGTATTTTTGGAGATTTAATTCAGCAAGGAATTG
TTATTATTCTTGCTGACGATGTTCACGTTGTTGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055743-exon-scaffold_258-1491911889:27406..29082 | TCONS_00055743-exon-scaffold_258-1491911889:27406..29082 | Clytia hemisphaerica | exon |
| TCONS_00055743-exon-scaffold_258-1510915933:27406..29082 | TCONS_00055743-exon-scaffold_258-1510915933:27406..29082 | Clytia hemisphaerica | exon |
| TCONS_00055743-exon-scaffold_258-1575043694:27406..29082 | TCONS_00055743-exon-scaffold_258-1575043694:27406..29082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:27406..29082 . |
Blast
The following BLAST results are available for this feature:
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