|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055744 ID=TCONS_00055744|Name=TCONS_00055744|organism=Clytia hemisphaerica|type=transcript|length=1170bp
CATGTTAGTCTAAACGAGATAATATAATATGATTAGAACCATAAACCTGA
ATATACTAGATAAGATATGGCGCAATCACTTTCTGTCCTCCAATAAAATG
GAATGTAAACCAAGACAATCTATGTACATCAATAACTCAAATGGCGCAAA
TACTTTCTGTTCTCCACTTTTAAAACCAACGTAATATAAATCAACAAACC
AAAACTATATACAAATGGTGCAATCAATCTGTCCGCCATTTCAAACATAa
ccaaataaaataaacaagaaatAAGGGGAGAGGTTACCAGCACTTCACCC
TTCAATATTTACGACATAATCATCAAGATACCGTGGGCGCCTAACATTGC
GTCTCGCATGATTGTTGGTGTCTTCCTCAGGGTCAGCACCGTCATCTTGT
TGAAGAGTTGTTTCCTCGTCAGACGAAGTGAAGTCATCGATATGATTGTT
GTCCCAGTCGTGGAAGTATAGTCGTTGGCGGGGAGTTGCGGGGTATATAC
GTGTCAAAGGTAGATCATACTTTCGAGACATAAAACGTGAATTATCGAAT
TTCTGAACTGTAGCCATATGGCCAACAATGTTCGTAACGATATATTGCTC
CCTAGATTTATGCTTAGAGCCTTCTTGTTTGATGAATACCAAGTCACCGA
CTTGGACGGTAGCATCTTTAGCGGCGTCTCCGCCTCGGCCTTTGGATCGG
GCACTGGGTTGATGGTTTCGTTGTCGGAGATGCTCGTGTTGATGAAGAAG
TGTGTTGTCCTTCACGTCGATTTTGTTGCCGGTTGATTGATCTCGTCGAT
GGATGATTTCTTTCGCAGACAAACCACGGGATCGAATACGTGTGTTGAGG
CTGTGGAGGGCTTGCTCGAGAGCAAGCGGGGTTAATGGCTTCCCCTCTCG
CTCAATACGGATTAGTTCATTTTCGAGCTCTTGAATACCCTTGTCGATTG
TTGCGTTACTGTTTTTATTCTTAATTCTACCAAAGTTAATTAAAATACCG
GCAGATGATAAACTTTTGTCTGTCTTGAGAGACTGAAAGCCAGGGGCGGC
ATCGACACGAATGATCGTAGAAGGTGTTCTGAGATGGTTCGTGGTAGATA
GAAGAGCAGAACGAAGACTTTCAGATTTTTCGTCGGGAATAAAAACGGCG
GTAGTGTAGCTCGAGAAAAT Run BLAST on NCBI protein sequence of TCONS_00055744-protein >TCONS_00055744-protein ID=TCONS_00055744-protein|Name=TCONS_00055744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
IFSSYTTAVFIPDEKSESLRSALLSTTNHLRTPSTIIRVDAAPGFQSLKT
DKSLSSAGILINFGRIKNKNSNATIDKGIQELENELIRIEREGKPLTPLA
LEQALHSLNTRIRSRGLSAKEIIHRRDQSTGNKIDVKDNTLLHQHEHLRQ
RNHQPSARSKGRGGDAAKDATVQVGDLVFIKQEGSKHKSREQYIVTNIVG
HMATVQKFDNSRFMSRKYDLPLTRIYPATPRQRLYFHDWDNNHIDDFTSS
DEETTLQQDDGADPEEDTNNHARRNVRRPRYLDDYVVNIEG Run BLAST on NCBI transcript from alignment at scaffold_258:30623..31792 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055744 ID=TCONS_00055744|Name=TCONS_00055744|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at scaffold_258:30623..31792 (Clytia hemisphaerica)
ATTTTCTCGAGCTACACTACCGCCGTTTTTATTCCCGACGAAAAATCTGA
AAGTCTTCGTTCTGCTCTTCTATCTACCACGAACCATCTCAGAACACCTT
CTACGATCATTCGTGTCGATGCCGCCCCTGGCTTTCAGTCTCTCAAGACA
GACAAAAGTTTATCATCTGCCGGTATTTTAATTAACTTTGGTAGAATTAA
GAATAAAAACAGTAACGCAACAATCGACAAGGGTATTCAAGAGCTCGAAA
ATGAACTAATCCGTATTGAGCGAGAGGGGAAGCCATTAACCCCGCTTGCT
CTCGAGCAAGCCCTCCACAGCCTCAACACACGTATTCGATCCCGTGGTTT
GTCTGCGAAAGAAATCATCCATCGACGAGATCAATCAACCGGCAACAAAA
TCGACGTGAAGGACAACACACTTCTTCATCAACACGAGCATCTCCGACAA
CGAAACCATCAACCCAGTGCCCGATCCAAAGGCCGAGGCGGAGACGCCGC
TAAAGATGCTACCGTCCAAGTCGGTGACTTGGTATTCATCAAACAAGAAG
GCTCTAAGCATAAATCTAGGGAGCAATATATCGTTACGAACATTGTTGGC
CATATGGCTACAGTTCAGAAATTCGATAATTCACGTTTTATGTCTCGAAA
GTATGATCTACCTTTGACACGTATATACCCCGCAACTCCCCGCCAACGAC
TATACTTCCACGACTGGGACAACAATCATATCGATGACTTCACTTCGTCT
GACGAGGAAACAACTCTTCAACAAGATGACGGTGCTGACCCTGAGGAAGA
CACCAACAATCATGCGAGACGCAATGTTAGGCGCCCACGGTATCTTGATG
ATTATGTCGTAAATATTGAAGGGTGAAGTGCTGGTAACCTCTCCCCTTat
ttcttgtttattttatttggtTATGTTTGAAATGGCGGACAGATTGATTG
CACCATTTGTATATAGTTTTGGTTTGTTGATTTATATTACGTTGGTTTTA
AAAGTGGAGAACAGAAAGTATTTGCGCCATTTGAGTTATTGATGTACATA
GATTGTCTTGGTTTACATTCCATTTTATTGGAGGACAGAAAGTGATTGCG
CCATATCTTATCTAGTATATTCAGGTTTATGGTTCTAATCATATTATATT
ATCTCGTTTAGACTAACATG Coding sequence (CDS) from alignment at scaffold_258:30623..31792 >TCONS_00055744 ID=TCONS_00055744|Name=TCONS_00055744|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_258:30623..31792 (Clytia hemisphaerica)
ATTTTCTCGAGCTACACTACCGCCGTTTTTATTCCCGACGAAAAATCTGA
AAGTCTTCGTTCTGCTCTTCTATCTACCACGAACCATCTCAGAACACCTT
CTACGATCATTCGTGTCGATGCCGCCCCTGGCTTTCAGTCTCTCAAGACA
GACAAAAGTTTATCATCTGCCGGTATTTTAATTAACTTTGGTAGAATTAA
GAATAAAAACAGTAACGCAACAATCGACAAGGGTATTCAAGAGCTCGAAA
ATGAACTAATCCGTATTGAGCGAGAGGGGAAGCCATTAACCCCGCTTGCT
CTCGAGCAAGCCCTCCACAGCCTCAACACACGTATTCGATCCCGTGGTTT
GTCTGCGAAAGAAATCATCCATCGACGAGATCAATCAACCGGCAACAAAA
TCGACGTGAAGGACAACACACTTCTTCATCAACACGAGCATCTCCGACAA
CGAAACCATCAACCCAGTGCCCGATCCAAAGGCCGAGGCGGAGACGCCGC
TAAAGATGCTACCGTCCAAGTCGGTGACTTGGTATTCATCAAACAAGAAG
GCTCTAAGCATAAATCTAGGGAGCAATATATCGTTACGAACATTGTTGGC
CATATGGCTACAGTTCAGAAATTCGATAATTCACGTTTTATGTCTCGAAA
GTATGATCTACCTTTGACACGTATATACCCCGCAACTCCCCGCCAACGAC
TATACTTCCACGACTGGGACAACAATCATATCGATGACTTCACTTCGTCT
GACGAGGAAACAACTCTTCAACAAGATGACGGTGCTGACCCTGAGGAAGA
CACCAACAATCATGCGAGACGCAATGTTAGGCGCCCACGGTATCTTGATG
ATTATGTCGTAAATATTGAAGGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055744-exon-scaffold_258-1491911889:30623..31792 | TCONS_00055744-exon-scaffold_258-1491911889:30623..31792 | Clytia hemisphaerica | exon |
| TCONS_00055744-exon-scaffold_258-1510915933:30623..31792 | TCONS_00055744-exon-scaffold_258-1510915933:30623..31792 | Clytia hemisphaerica | exon |
| TCONS_00055744-exon-scaffold_258-1575043694:30623..31792 | TCONS_00055744-exon-scaffold_258-1575043694:30623..31792 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:30623..31792 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
