TCONS_00055749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055749
Unique NameTCONS_00055749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055749 ID=TCONS_00055749|Name=TCONS_00055749|organism=Clytia hemisphaerica|type=transcript|length=856bp
CCTTTATGTTGTTATTATTTCTCACTTTTGAGACCCCTCATTTTGAAGAC
AATATTATTCTTATGTGCAAAAGATACCAATCAGATTTATAACCTTAAGG
AAACTTACCTAAAATATCTAGATTAAAAACAAGACGAGAGGACTTAGAAA
TTGGATGGTTCCTACCCAGAAAGTGTAAagattttattattaaaaaatca
GATATCAACAATtgttatttctttgaatttgccAAAACTCTACGACGAAT
AATGTCTTCCTTTAATCTTACCAAAAGAAGATAGAttgatttttaaatct
ttgttgaattttgttgaGTAAAAAATACGTCAAGGGAGCTATTAGAAGGA
CTAAGTAACAAACTATgtcagaaataattttttgaaaaattattgacaaa
gctaccagaattttgaaattttatgaactAATGAAATATATTAAGCTTTC
GATAAACAAGGAAATATTTAAGTATAAATATTTCTTAATCTTTTTTGTNC
TTTTGATAAACAAGGAAATCTTTATGTATTAATATTTcttaatctttttt
gtttttttcccaaTGTTTAAATGACCGCAAAATGTCAGGAGATGTAATTC
GCTGAGAGGGTTTTTTTTCACACATTTTTCGTTGCAAATCTTGAAGAAGA
GAATTTTCTCCGTCTGCAACAAACTGGTATATATAACCCAAAGAAAAGAT
ATCAGTTTCTGTGGATGTCTTAGAGCCAGGAATGTTTCTCAATTCATGAG
CCAGATATTGATGACGTATGTTGTATCGCTTTTGCTGCTTTTCAGTCAAA
TTGTAACGTTCAGGATTATTTCTGCTGGTAGCTTTCCCAAAGTCAATAAT
CACTGC
Run BLAST on NCBI

protein sequence of TCONS_00055749-protein

>TCONS_00055749-protein ID=TCONS_00055749-protein|Name=TCONS_00055749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
AVIIDFGKATSRNNPERYNLTEKQQKRYNIRHQYLAHELRNIPGSKTSTE
TDIFSLGYIYQFVADGENSLLQDLQRKMCEKKPSQRITSPDILRSFKHWE
KNKKD
Run BLAST on NCBI

transcript from alignment at scaffold_258:87888..88743

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055749 ID=TCONS_00055749|Name=TCONS_00055749|organism=Clytia hemisphaerica|type=transcript|length=856bp|location=Sequence derived from alignment at scaffold_258:87888..88743 (Clytia hemisphaerica)
GCAGTGATTATTGACTTTGGGAAAGCTACCAGCAGAAATAATCCTGAACG
TTACAATTTGACTGAAAAGCAGCAAAAGCGATACAACATACGTCATCAAT
ATCTGGCTCATGAATTGAGAAACATTCCTGGCTCTAAGACATCCACAGAA
ACTGATATCTTTTCTTTGGGTTATATATACCAGTTTGTTGCAGACGGAGA
AAATTCTCTTCTTCAAGATTTGCAACGAAAAATGTGTGAAAAAAAACCCT
CTCAGCGAATTACATCTCCTGACATTTTGCGGTCATTTAAACAttgggaa
aaaaacaaaaaagattaagAAATATTAATACATAAAGATTTCCTTGTTTA
TCAAAAGNACAAAAAAGATTAAGAAATATTTATACTTAAATATTTCCTTG
TTTATCGAAAGCTTAATATATTTCATTagttcataaaatttcaaaattct
ggtagctttgtcaataatttttcaaaaaattatttctgacATAGTTTGTT
ACTTAGTCCTTCTAATAGCTCCCTTGACGTATTTTTTACtcaacaaaatt
caacaaagatttaaaaatcaaTCTATCTTCTTTTGGTAAGATTAAAGGAA
GACATTATTCGTCGTAGAGTTTTggcaaattcaaagaaataacaATTGTT
GATATCtgattttttaataataaaatctTTACACTTTCTGGGTAGGAACC
ATCCAATTTCTAAGTCCTCTCGTCTTGTTTTTAATCTAGATATTTTAGGT
AAGTTTCCTTAAGGTTATAAATCTGATTGGTATCTTTTGCACATAAGAAT
AATATTGTCTTCAAAATGAGGGGTCTCAAAAGTGAGAAATAATAACAACA
TAAAGG

Coding sequence (CDS) from alignment at scaffold_258:87888..88743

>TCONS_00055749 ID=TCONS_00055749|Name=TCONS_00055749|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_258:87888..88743 (Clytia hemisphaerica)
GCAGTGATTATTGACTTTGGGAAAGCTACCAGCAGAAATAATCCTGAACG
TTACAATTTGACTGAAAAGCAGCAAAAGCGATACAACATACGTCATCAAT
ATCTGGCTCATGAATTGAGAAACATTCCTGGCTCTAAGACATCCACAGAA
ACTGATATCTTTTCTTTGGGTTATATATACCAGTTTGTTGCAGACGGAGA
AAATTCTCTTCTTCAAGATTTGCAACGAAAAATGTGTGAAAAAAAACCCT
CTCAGCGAATTACATCTCCTGACATTTTGCGGTCATTTAAACAttgggaa
aaaaacaaaaaagattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035092XLOC_035092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055749-exon-scaffold_258-1491911889:87888..88743TCONS_00055749-exon-scaffold_258-1491911889:87888..88743Clytia hemisphaericaexon
TCONS_00055749-exon-scaffold_258-1510915933:87888..88743TCONS_00055749-exon-scaffold_258-1510915933:87888..88743Clytia hemisphaericaexon
TCONS_00055749-exon-scaffold_258-1575043694:87888..88743TCONS_00055749-exon-scaffold_258-1575043694:87888..88743Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055749-proteinTCONS_00055749-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:87888..88743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09714	1.20611	0.745033	0.425191	1.2571	1.16868	2.25594	2.57398	1.57106	1.20195	2.2577	1.46077	1.31287	0.64384	0.84069	0.969019	0.946768	1.35013	0.81606	0.670959	1.73127	1.08611	0.440103	0.685916	1.82507	1.89154	1.92566	1.0036	1.2781	0.868118
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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