TCONS_00055753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055753
Unique NameTCONS_00055753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055753 ID=TCONS_00055753|Name=TCONS_00055753|organism=Clytia hemisphaerica|type=transcript|length=220bp
GGACATTCTAATTCTACCTTTATCCAAAGTTACAGATAAAAGTTTTACAC
CAAATACTCTAAAGTGTTGTCAGTGAACTTTCTGACGCCATGTTGTCTTC
CCTCTTTGCTTTTGTAATAGAATAGAATGTAAAcattaaaacgttcgaat
tcTTAGACGGGGGTAAGAAATCATGCAAAGACACCTTTGATACTTATTAC
ATGcacttaaaactaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_258:160235..160454

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055753 ID=TCONS_00055753|Name=TCONS_00055753|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at scaffold_258:160235..160454 (Clytia hemisphaerica)
ttttttagttttaagtgCATGTAATAAGTATCAAAGGTGTCTTTGCATGA
TTTCTTACCCCCGTCTAAgaattcgaacgttttaatgTTTACATTCTATT
CTATTACAAAAGCAAAGAGGGAAGACAACATGGCGTCAGAAAGTTCACTG
ACAACACTTTAGAGTATTTGGTGTAAAACTTTTATCTGTAACTTTGGATA
AAGGTAGAATTAGAATGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035096XLOC_035096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055753-exon-scaffold_258-1491911889:160235..160454TCONS_00055753-exon-scaffold_258-1491911889:160235..160454Clytia hemisphaericaexon
TCONS_00055753-exon-scaffold_258-1510915933:160235..160454TCONS_00055753-exon-scaffold_258-1510915933:160235..160454Clytia hemisphaericaexon
TCONS_00055753-exon-scaffold_258-1575043694:160235..160454TCONS_00055753-exon-scaffold_258-1575043694:160235..160454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:160235..160454 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.71139	0	7.0037	6.85203	0	0	1.59052	1.48903	2.08501	1.29131	0	1.64784	0.822776	0	0.702483	0	1.85742	0	1.3151	4.12846	0	0	0	1.28959	0	1.18543	0	0	2.74623	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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