Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055756 ID=TCONS_00055756|Name=TCONS_00055756|organism=Clytia hemisphaerica|type=transcript|length=1023bp AAGGAAAAGAATTCAAAACACAGAAGAAAATGGAGGAGACAAGTGTTAGA TTCCAACTTCTTTCTGAagaagaactttcaaaaatagcTGAAGaatcgaa aaacaaaaacactaaAAGGAGTACGAACACTTGGATCAATGTCTACAAAA GCTGGGCTGTTCAGAGAAATATGAAAGTCCAGTTGGAAGAGTACAGCCCT CCTGAATTGGATGCTGTATTATGCCAGTTCTACGGTGAAGTCAGAAAGAG AGATGGAGATGATTATGAACCAGACTCTTTACGTGTAATGCAGGCAGGAC TTCATCGTTACCTTGTAGAAAACAACTATCCGAAGTCTATCATGGATGAG ACTGTATTCaataaaagcatcaaaactCTTGAAGGGAAAGCACGTTTGTT TAGACAAAATGGAATGGGGAAACGTCCAAATGCTAGTCAAGCTATTACGA GGGATGAGGAAGATGAACTTTGGCGTTCTGGAAAATTGGGAATATCGAAC CCAGTTTCACTGCTGCATACAATATGGTTCCTTAACATTCAACACTTTGG TCAACGAGGCCAACAAGAGCATGCTTCATTGAATATCGAAAATTTCCAAA CGAAAACTGACGAAGAAAGTGGATTAGTGTACATTGAGTATTTTGAGCCT CCCACAAAAACACGTCAACACGGTTTGCACCCGAATCCTCGAGTTACAAA TCCAAAGATGTTTGAAATACCTGACAATGAAAGATGTCCTGTCAGGATAT TTAATTTTTACGTTTCAAAGCGCCCTTCAAATCTACAAAACACTGGTCGT TTTTATCTTTCACCGAAATCTGTTTATTCGAAAGACGTTGATGAACCTTG GTTTAAAAGCGTTGCTGTTGGCAAAAACAAGATTGCAACCTTTATGAAAG AGATTATTTCAGGTACAAACATCGAAAAAGGCAAGAAAATCACTAATCAT AGTGGTcgaaaactttttgtcaaaaagatGAAAGCAGCCAACATTCCTGA AACCTCAATCATCAAGATAACTG Run BLAST on NCBI protein sequence of TCONS_00055756-protein >TCONS_00055756-protein ID=TCONS_00055756-protein|Name=TCONS_00055756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
GKEFKTQKKMEETSVRFQLLSEEELSKIAEESKNKNTKRSTNTWINVYKS WAVQRNMKVQLEEYSPPELDAVLCQFYGEVRKRDGDDYEPDSLRVMQAGL HRYLVENNYPKSIMDETVFNKSIKTLEGKARLFRQNGMGKRPNASQAITR DEEDELWRSGKLGISNPVSLLHTIWFLNIQHFGQRGQQEHASLNIENFQT KTDEESGLVYIEYFEPPTKTRQHGLHPNPRVTNPKMFEIPDNERCPVRIF NFYVSKRPSNLQNTGRFYLSPKSVYSKDVDEPWFKSVAVGKNKIATFMKE IISGTNIEKGKKITNHSGRKLFVKKMKAANIPETSIIKIT Run BLAST on NCBI transcript from alignment at scaffold_258:228802..229824 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055756 ID=TCONS_00055756|Name=TCONS_00055756|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at scaffold_258:228802..229824 (Clytia hemisphaerica) CAGTTATCTTGATGATTGAGGTTTCAGGAATGTTGGCTGCTTTCatcttt
ttgacaaaaagttttcgACCACTATGATTAGTGATTTTCTTGCCTTTTTC
GATGTTTGTACCTGAAATAATCTCTTTCATAAAGGTTGCAATCTTGTTTT
TGCCAACAGCAACGCTTTTAAACCAAGGTTCATCAACGTCTTTCGAATAA
ACAGATTTCGGTGAAAGATAAAAACGACCAGTGTTTTGTAGATTTGAAGG
GCGCTTTGAAACGTAAAAATTAAATATCCTGACAGGACATCTTTCATTGT
CAGGTATTTCAAACATCTTTGGATTTGTAACTCGAGGATTCGGGTGCAAA
CCGTGTTGACGTGTTTTTGTGGGAGGCTCAAAATACTCAATGTACACTAA
TCCACTTTCTTCGTCAGTTTTCGTTTGGAAATTTTCGATATTCAATGAAG
CATGCTCTTGTTGGCCTCGTTGACCAAAGTGTTGAATGTTAAGGAACCAT
ATTGTATGCAGCAGTGAAACTGGGTTCGATATTCCCAATTTTCCAGAACG
CCAAAGTTCATCTTCCTCATCCCTCGTAATAGCTTGACTAGCATTTGGAC
GTTTCCCCATTCCATTTTGTCTAAACAAACGTGCTTTCCCTTCAAGagtt
ttgatgcttttattGAATACAGTCTCATCCATGATAGACTTCGGATAGTT
GTTTTCTACAAGGTAACGATGAAGTCCTGCCTGCATTACACGTAAAGAGT
CTGGTTCATAATCATCTCCATCTCTCTTTCTGACTTCACCGTAGAACTGG
CATAATACAGCATCCAATTCAGGAGGGCTGTACTCTTCCAACTGGACTTT
CATATTTCTCTGAACAGCCCAGCTTTTGTAGACATTGATCCAAGTGTTCG
TACTCCTTttagtgtttttgtttttcgattCTTCAgctatttttgaaagt
tcttctTCAGAAAGAAGTTGGAATCTAACACTTGTCTCCTCCATTTTCTT
CTGTGTTTTGAATTCTTTTCCTT Coding sequence (CDS) from alignment at scaffold_258:228802..229824 >TCONS_00055756 ID=TCONS_00055756|Name=TCONS_00055756|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_258:228802..229824 (Clytia hemisphaerica) AGTTATCTTGATGATTGAGGTTTCAGGAATGTTGGCTGCTTTCatctttt tgacaaaaagttttcgACCACTATGATTAGTGATTTTCTTGCCTTTTTCG ATGTTTGTACCTGAAATAATCTCTTTCATAAAGGTTGCAATCTTGTTTTT GCCAACAGCAACGCTTTTAAACCAAGGTTCATCAACGTCTTTCGAATAAA CAGATTTCGGTGAAAGATAAAAACGACCAGTGTTTTGTAGATTTGAAGGG CGCTTTGAAACGTAAAAATTAAATATCCTGACAGGACATCTTTCATTGTC AGGTATTTCAAACATCTTTGGATTTGTAACTCGAGGATTCGGGTGCAAAC CGTGTTGACGTGTTTTTGTGGGAGGCTCAAAATACTCAATGTACACTAAT CCACTTTCTTCGTCAGTTTTCGTTTGGAAATTTTCGATATTCAATGAAGC ATGCTCTTGTTGGCCTCGTTGACCAAAGTGTTGAATGTTAAGGAACCATA TTGTATGCAGCAGTGAAACTGGGTTCGATATTCCCAATTTTCCAGAACGC CAAAGTTCATCTTCCTCATCCCTCGTAATAGCTTGACTAGCATTTGGACG TTTCCCCATTCCATTTTGTCTAAACAAACGTGCTTTCCCTTCAAGagttt tgatgcttttattGAATACAGTCTCATCCATGATAGACTTCGGATAGTTG TTTTCTACAAGGTAACGATGAAGTCCTGCCTGCATTACACGTAAAGAGTC TGGTTCATAATCATCTCCATCTCTCTTTCTGACTTCACCGTAGAACTGGC ATAATACAGCATCCAATTCAGGAGGGCTGTACTCTTCCAACTGGACTTTC ATATTTCTCTGAACAGCCCAGCTTTTGTAGACATTGATCCAAGTGTTCGT ACTCCTTttagtgtttttgtttttcgattCTTCAgctatttttgaaagtt cttctTCAGAAAGAAGTTGGAATCTAACACTTGTCTCCTCCATTTTCTTC TGTGTTTTGAATTCTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00055756-exon-scaffold_258-1491911889:228802..229824 | TCONS_00055756-exon-scaffold_258-1491911889:228802..229824 | Clytia hemisphaerica | exon |
TCONS_00055756-exon-scaffold_258-1510915933:228802..229824 | TCONS_00055756-exon-scaffold_258-1510915933:228802..229824 | Clytia hemisphaerica | exon |
TCONS_00055756-exon-scaffold_258-1575043694:228802..229824 | TCONS_00055756-exon-scaffold_258-1575043694:228802..229824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_258 | supercontig | scaffold_258:228802..229824 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR021893 | DUF3504 |
Blast
BLAST of TCONS_00055756 vs. Swiss-Prot (Human)
Match: ZMYM3 (Zinc finger MYM-type protein 3 OS=Homo sapiens GN=ZMYM3 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.671e-22 Identity = 70/253 (27.67%), Postives = 125/253 (49.41%), Query Frame = 3 Query: 195 SPPELDAVLCQFYGEVRKRDGDDYEPDSLRVMQAGLHRYLVENNYPKSIMDETVFNKSIKTLEGKARLFRQNGMGKRPNASQAITRDEEDELWRSGKLGISNPVSLLHTIWFLNIQHFGQRGQQEHASLNIENFQTKTDE------ESGLVYIEYFEP--PTKTRQHGLHPNPRVTNPKMFEIPDNE----RCPVRIFNFYVSKRPSNLQNTGR-FYLSPKSVYSKDVDEP-WFKSVAVGKNKIATFMKEIIS 911
S EL+ L QF E+ + +G+ YEPDS+ + G+ +YL+ENN +I + + ++ L ++ + PN + +R EE+ LW +LG+ +P LL+T+ F N + FG + +EH L+ N ++ + + +V I Y+ P K R G R + E +N RCPV+ + FY+SK P +L+ FYL P+ S + P W+ + + ++ + + + I++
Sbjct: 1107 SAAELNYGLAQFVREITRPNGERYEPDSIYYLCLGIQQYLLENNRMVNIFTDLYYLTFVQELNKSLSTWQPTLL---PN-NTVFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCTTPRGTTKVVSIRYYAPVRQRKGRDTGPGKRKREDEAPILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPER--SCIAESPLWYSVIPMDRSMLESMLNRILA 1353
The following BLAST results are available for this feature:
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