TCONS_00055770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055770
Unique NameTCONS_00055770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055770 ID=TCONS_00055770|Name=TCONS_00055770|organism=Clytia hemisphaerica|type=transcript|length=504bp
ccaaaatgctataatttttcttaagccattaagtttacaattgggcctac
gaatgatttcaaagatactgaagttgagccagtgcggttagcacgttcga
cagtacAAGAAACCTGAGAATTAACGACAACAACAACCTGAGAATCAACG
ACAACAACAAGAACACGCCGATGAGGACAACAGAAACACGCAGAAGCAAT
GGGACTTCGAGGAACCAACTCCACCACAACAAGTGCTCCTCCAACGAGAT
GGTGAAGTCACCAACCCTGTTCCACAACACGAGGACGTTCAAACAATCAT
CACGATTTTGTTCGTAGATCAACGAGACCACGGAGAGCCCCAGTACGATT
TGCTGAGGAGGACTAGTCGCCATGACGGCCAtacatattttatttcttac
aGTTACACAGACTGCCCGCATATCGGTTCACAGCAGTTTTTTTTGAGGAT
ATATTCCATTTGACCCATGTACAAGTAGTGTGCATGTGTAACGATCTTGT
TCTA
Run BLAST on NCBI

transcript from alignment at scaffold_258:417347..417850

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055770 ID=TCONS_00055770|Name=TCONS_00055770|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at scaffold_258:417347..417850 (Clytia hemisphaerica)
TAGAACAAGATCGTTACACATGCACACTACTTGTACATGGGTCAAATGGA
ATATATCCTCAAAAAAAACTGCTGTGAACCGATATGCGGGCAGTCTGTGT
AACtgtaagaaataaaatatgtaTGGCCGTCATGGCGACTAGTCCTCCTC
AGCAAATCGTACTGGGGCTCTCCGTGGTCTCGTTGATCTACGAACAAAAT
CGTGATGATTGTTTGAACGTCCTCGTGTTGTGGAACAGGGTTGGTGACTT
CACCATCTCGTTGGAGGAGCACTTGTTGTGGTGGAGTTGGTTCCTCGAAG
TCCCATTGCTTCTGCGTGTTTCTGTTGTCCTCATCGGCGTGTTCTTGTTG
TTGTCGTTGATTCTCAGGTTGTTGTTGTCGTTAATTCTCAGGTTTCTTgt
actgtcgaacgtgctaaccgcactggctcaacttcagtatctttgaaatc
attcgtaggcccaattgtaaacttaatggcttaagaaaaattatagcatt
ttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035113XLOC_035113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055770-exon-scaffold_258-1491911889:417347..417850TCONS_00055770-exon-scaffold_258-1491911889:417347..417850Clytia hemisphaericaexon
TCONS_00055770-exon-scaffold_258-1510915933:417347..417850TCONS_00055770-exon-scaffold_258-1510915933:417347..417850Clytia hemisphaericaexon
TCONS_00055770-exon-scaffold_258-1575043694:417347..417850TCONS_00055770-exon-scaffold_258-1575043694:417347..417850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:417347..417850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.461343	0.974768	1.63191	0.49905	0.185241	0	0	0.558307	0.672123	0.728262	0.458001	0.158764	0	0.42847	0.162061	0.132464	1.69699	0	0	0.773264	0.377272	0.37108	0.476383	0	0.630988	0.312709	1.49133	0.324648	0.510498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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