TCONS_00055771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055771
Unique NameTCONS_00055771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055771 ID=TCONS_00055771|Name=TCONS_00055771|organism=Clytia hemisphaerica|type=transcript|length=342bp
TTTCAAATCAAGATAGACACTTCACCACAGCAGTATTTAAGCTTAACCAT
TATGGGCAGTatctcaaaaacaaaatggagTATGGCGACATACGAGTTCG
AATCTTGGATTGGAAAGATAATCGATAAAAAGGCCGAAAGAtttcttaaa
tttgattttcataaatAAGCGCTGGCTTTAATAACTCCCGTCTCGAACAT
ATTAAATATCGTCATCACAACGGGCGAGTCAAATACATATATCTACTtat
aaataaagttttaaagaaagaaatgttTCCCTTTTTTACATGTCTCAGTA
CTTTGTctttatttagtggaaaatgaCTTTTATAGGCTCACT
Run BLAST on NCBI

transcript from alignment at scaffold_258:428027..428368

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055771 ID=TCONS_00055771|Name=TCONS_00055771|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_258:428027..428368 (Clytia hemisphaerica)
AGTGAGCCTATAAAAGtcattttccactaaataaagACAAAGTACTGAGA
CATGTAAAAAAGGGAaacatttctttctttaaaactttatttataAGTAG
ATATATGTATTTGACTCGCCCGTTGTGATGACGATATTTAATATGTTCGA
GACGGGAGTTATTAAAGCCAGCGCTTatttatgaaaatcaaatttaagaa
aTCTTTCGGCCTTTTTATCGATTATCTTTCCAATCCAAGATTCGAACTCG
TATGTCGCCATActccattttgtttttgagatACTGCCCATAATGGTTAA
GCTTAAATACTGCTGTGGTGAAGTGTCTATCTTGATTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035114XLOC_035114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055771-exon-scaffold_258-1491911889:428027..428368TCONS_00055771-exon-scaffold_258-1491911889:428027..428368Clytia hemisphaericaexon
TCONS_00055771-exon-scaffold_258-1510915933:428027..428368TCONS_00055771-exon-scaffold_258-1510915933:428027..428368Clytia hemisphaericaexon
TCONS_00055771-exon-scaffold_258-1575043694:428027..428368TCONS_00055771-exon-scaffold_258-1575043694:428027..428368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:428027..428368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266749	0	0.302026	0.590971	2.51808	2.55834	1.37179	1.60532	1.4925	1.11372	0	0.213483	0.354812	0	0.178423	0	0.60087	0	0.567119	0.296725	2.04833	1.11312	0	0.556122	1.14558	0.255602	0.73153	0	0.88821	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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