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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055772 ID=TCONS_00055772|Name=TCONS_00055772|organism=Clytia hemisphaerica|type=transcript|length=1456bp
CTGTATATTGGCCCTTTGTGGAAACAATCCTTGAACTGTCTAAAAGCTCA
AGGAATTTTCAGGCCAGTCactttaaaaatttgttgttattgttatcatt
attattaGTCATAATTATCAACTTATTATCAAAGGATTGCTAATTGATTT
AATGCAAATTTTGGGAGTTTTAACGAAACCAAATTTTCAATCCCATTGCT
GCATACTGAGGTATTATAAAAGTATCCAACTTCATTCTCACATACTGAGT
TATTTTATTGAACTTTATCCTCACAAACCAAAAAAGAGCTGATCTTAACC
AGCTTTTTAGCTCAACTAAGCACATGGTTACTAAGTTCAGACTCTGTCTT
TAGCAAATTTACATCATACCATCCTGTACCATCACTTGAAATGTGAAAAC
GTTATGAACCTTTATGAACACTGATTTTATAACGAACATTTAggttattt
ttttcatggattCATTTTAAACCAACAACACTGAACAACAGtctaatgaa
aacaatcaaaagacttttgtTGAAAAGGGTAATTATGGCAACAAGATGTC
TCTCCACAAACACTTCACAATTCAAACTGATCATGAAGGAAGGTGACTTG
TTTACTTGTCCTGCAATTGAAAGTCTTGCTCATTGTGTGAGTGTTGATCT
TCGCATGGGAAAGGGTATTGCTGTTAACTTTAAGAAAGAGTTTGGACAAG
TTGGAGTATTGAAGAAGCAGGGAGCAAAAGTTGGTGGATTTGCCGTGTTA
AAGGTTGAAGAAAGATATGTTTATTATTTggttacaaaagaaaaattctc
AGATAAACCTACTTATAAAACAATAGAATCATCACTAAAAGCTATGTGCT
CTCATTGTGTAGCTCATGATGTGAAACTAATTTCAATGCCAAAGATTGGT
TCTGGGCTTGACAAACTAGATTGGAAACGTGTTCGTGACATCATttgtag
aattttttcaaacactGATATCCAAATCACAGTTTATGTTTACCAGCCgc
caaaattaggaaaaaaaacGAGCTGAATGGTTATCGGCCATATTTTCATT
AATGTTCATAAATATTCCATTTGcgtttttgaaataatttgaagGTTTCC
TTCAATTCTATCTACTTCATTACAGTATGCAACTATaaataatttatatt
tttataagaagatttGTAGGATCAACATGCATTTAATTTTAACTTAAGTC
CACTATTGAATTTCGGTTTCTATTGTTTTGTGTAAATATTTCACGTTTTA
ATAATTATATAGaattaaaataatttacttGGTGTGCCAGAAATATgtaa
gttatttttgatttgatattaggcagtagaaaagagatttttcagaATTG
TTAAGAGGAAAgtctaacttaaaattttgtgTATTATTaatttacttcat
tggttcaagATTTATGTCCGAAAAACTAATAcgttaatttaaaaaaatgt
caaaat Run BLAST on NCBI transcript from alignment at scaffold_259:6458..7913+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055772 ID=TCONS_00055772|Name=TCONS_00055772|organism=Clytia hemisphaerica|type=transcript|length=1456bp|location=Sequence derived from alignment at scaffold_259:6458..7913+ (Clytia hemisphaerica)
CTGTATATTGGCCCTTTGTGGAAACAATCCTTGAACTGTCTAAAAGCTCA
AGGAATTTTCAGGCCAGTCactttaaaaatttgttgttattgttatcatt
attattaGTCATAATTATCAACTTATTATCAAAGGATTGCTAATTGATTT
AATGCAAATTTTGGGAGTTTTAACGAAACCAAATTTTCAATCCCATTGCT
GCATACTGAGGTATTATAAAAGTATCCAACTTCATTCTCACATACTGAGT
TATTTTATTGAACTTTATCCTCACAAACCAAAAAAGAGCTGATCTTAACC
AGCTTTTTAGCTCAACTAAGCACATGGTTACTAAGTTCAGACTCTGTCTT
TAGCAAATTTACATCATACCATCCTGTACCATCACTTGAAATGTGAAAAC
GTTATGAACCTTTATGAACACTGATTTTATAACGAACATTTAggttattt
ttttcatggattCATTTTAAACCAACAACACTGAACAACAGtctaatgaa
aacaatcaaaagacttttgtTGAAAAGGGTAATTATGGCAACAAGATGTC
TCTCCACAAACACTTCACAATTCAAACTGATCATGAAGGAAGGTGACTTG
TTTACTTGTCCTGCAATTGAAAGTCTTGCTCATTGTGTGAGTGTTGATCT
TCGCATGGGAAAGGGTATTGCTGTTAACTTTAAGAAAGAGTTTGGACAAG
TTGGAGTATTGAAGAAGCAGGGAGCAAAAGTTGGTGGATTTGCCGTGTTA
AAGGTTGAAGAAAGATATGTTTATTATTTggttacaaaagaaaaattctc
AGATAAACCTACTTATAAAACAATAGAATCATCACTAAAAGCTATGTGCT
CTCATTGTGTAGCTCATGATGTGAAACTAATTTCAATGCCAAAGATTGGT
TCTGGGCTTGACAAACTAGATTGGAAACGTGTTCGTGACATCATttgtag
aattttttcaaacactGATATCCAAATCACAGTTTATGTTTACCAGCCgc
caaaattaggaaaaaaaacGAGCTGAATGGTTATCGGCCATATTTTCATT
AATGTTCATAAATATTCCATTTGcgtttttgaaataatttgaagGTTTCC
TTCAATTCTATCTACTTCATTACAGTATGCAACTATaaataatttatatt
tttataagaagatttGTAGGATCAACATGCATTTAATTTTAACTTAAGTC
CACTATTGAATTTCGGTTTCTATTGTTTTGTGTAAATATTTCACGTTTTA
ATAATTATATAGaattaaaataatttacttGGTGTGCCAGAAATATgtaa
gttatttttgatttgatattaggcagtagaaaagagatttttcagaATTG
TTAAGAGGAAAgtctaacttaaaattttgtgTATTATTaatttacttcat
tggttcaagATTTATGTCCGAAAAACTAATAcgttaatttaaaaaaatgt
caaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055772-exon-scaffold_259-1491911889:6458..7913 | TCONS_00055772-exon-scaffold_259-1491911889:6458..7913 | Clytia hemisphaerica | exon |
| TCONS_00055772-exon-scaffold_259-1510915933:6458..7913 | TCONS_00055772-exon-scaffold_259-1510915933:6458..7913 | Clytia hemisphaerica | exon |
| TCONS_00055772-exon-scaffold_259-1575043694:6458..7913 | TCONS_00055772-exon-scaffold_259-1575043694:6458..7913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_259 | supercontig | scaffold_259:6458..7913 + |
Blast
BLAST of TCONS_00055772 vs. Swiss-Prot (Human)
Match: OARD1 (O-acetyl-ADP-ribose deacetylase 1 OS=Homo sapiens GN=OARD1 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 3.835e-44 Identity = 75/147 (51.02%), Postives = 101/147 (68.71%), Query Frame = 1
Query: 550 LSTNTSQFKLIMKEGDLFTCPAIESLAHCVSVDLRMGKGIAVNFKKEFGQVGVLKKQGAKVGGFAVLKVEERYVYYLVTKEKFSDKPTYKTIESSLKAMCSHCVAHDVKLISMPKIGSGLDKLDWKRVRDIICRIFSNTDIQITVYV 990
L+ + ++ +GDLF CP +SLAHC+S D RMG GIAV FKK+FG V L Q K G AVLK + RY+YYL+TK++ S KPTY+ ++ SL+AM SHC+ + V +SMP+IG GLD+L W+ V +I +F TDI+ITVY
Sbjct: 5 LNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYT 151
The following BLAST results are available for this feature:
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