TCONS_00055773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055773
Unique NameTCONS_00055773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length919

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055773 ID=TCONS_00055773|Name=TCONS_00055773|organism=Clytia hemisphaerica|type=transcript|length=919bp
GAGTTTTAACGAAACCAAATTTTCAATCCCATTGCTGCATACTGAGgtta
tttttttcatggattCATTTTAAACCAACAACACTGAACAACAGtctaat
gaaaacaatcaaaagacttttgtTGAAAAGGGTAATTATGGCAACAAGAT
GTCTCTCCACAAACACTTCACAATTCAAACTGATCATGAAGGAAGGTGAC
TTGTTTACTTGTCCTGCAATTGAAAGTCTTGCTCATTGTGTGAGTGTTGA
TCTTCGCATGGGAAAGGGTATTGCTGTTAACTTTAAGAAAGAGTTTGGAC
AAGTTGGAGTATTGAAGAAGCAGGGAGCAAAAGTTGGTGGATTTGCCGTG
TTAAAGGTTGAAGAAAGATATGTTTATTATTTggttacaaaagaaaaatt
ctcAGATAAACCTACTTATAAAACAATAGAATCATCACTAAAAGCTATGT
GCTCTCATTGTGTAGCTCATGATGTGAAACTAATTTCAATGCCAAAGATT
GGTTCTGGGCTTGACAAACTAGATTGGAAACGTGTTCGTGACATCATttg
tagaattttttcaaacactGATATCCAAATCACAGTTTATGTTTACCAGC
CgccaaaattaggaaaaaaaacGAGCTGAATGGTTATCGGCCATATTTTC
ATTAATGTTCATAAATATTCCATTTGcgtttttgaaataatttgaagGTT
TCCTTCAATTCTATCTACTTCATTACAGTATGCAACTATaaataatttat
atttttataagaagatttGTAGGATCAACATGCATTTAATTTTAACTTAA
GTCCACTATTGAATTTCGGTTTCTATTGTTTTGTGTAAATATTTCACGTT
TTAATAATTATATAGaattaaaataatttacttGGTGTGCCAGAAATATg
taagttatttttgatttga
Run BLAST on NCBI

protein sequence of TCONS_00055773-protein

>TCONS_00055773-protein ID=TCONS_00055773-protein|Name=TCONS_00055773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
VLTKPNFQSHCCILRLFFSWIHFKPTTLNNSLMKTIKRLLLKRVIMATRC
LSTNTSQFKLIMKEGDLFTCPAIESLAHCVSVDLRMGKGIAVNFKKEFGQ
VGVLKKQGAKVGGFAVLKVEERYVYYLVTKEKFSDKPTYKTIESSLKAMC
SHCVAHDVKLISMPKIGSGLDKLDWKRVRDIICRIFSNTDIQITVYVYQP
PKLGKKTS
Run BLAST on NCBI

transcript from alignment at scaffold_259:6622..7773+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055773 ID=TCONS_00055773|Name=TCONS_00055773|organism=Clytia hemisphaerica|type=transcript|length=1152bp|location=Sequence derived from alignment at scaffold_259:6622..7773+ (Clytia hemisphaerica)
GAGTTTTAACGAAACCAAATTTTCAATCCCATTGCTGCATACTGAGGTAT
TATAAAAGTATCCAACTTCATTCTCACATACTGAGTTATTTTATTGAACT
TTATCCTCACAAACCAAAAAAGAGCTGATCTTAACCAGCTTTTTAGCTCA
ACTAAGCACATGGTTACTAAGTTCAGACTCTGTCTTTAGCAAATTTACAT
CATACCATCCTGTACCATCACTTGAAATGTGAAAACGTTATGAACCTTTA
TGAACACTGATTTTATAACGAACATTTAggttatttttttcatggattCA
TTTTAAACCAACAACACTGAACAACAGtctaatgaaaacaatcaaaagac
ttttgtTGAAAAGGGTAATTATGGCAACAAGATGTCTCTCCACAAACACT
TCACAATTCAAACTGATCATGAAGGAAGGTGACTTGTTTACTTGTCCTGC
AATTGAAAGTCTTGCTCATTGTGTGAGTGTTGATCTTCGCATGGGAAAGG
GTATTGCTGTTAACTTTAAGAAAGAGTTTGGACAAGTTGGAGTATTGAAG
AAGCAGGGAGCAAAAGTTGGTGGATTTGCCGTGTTAAAGGTTGAAGAAAG
ATATGTTTATTATTTggttacaaaagaaaaattctcAGATAAACCTACTT
ATAAAACAATAGAATCATCACTAAAAGCTATGTGCTCTCATTGTGTAGCT
CATGATGTGAAACTAATTTCAATGCCAAAGATTGGTTCTGGGCTTGACAA
ACTAGATTGGAAACGTGTTCGTGACATCATttgtagaattttttcaaaca
ctGATATCCAAATCACAGTTTATGTTTACCAGCCgccaaaattaggaaaa
aaaacGAGCTGAATGGTTATCGGCCATATTTTCATTAATGTTCATAAATA
TTCCATTTGcgtttttgaaataatttgaagGTTTCCTTCAATTCTATCTA
CTTCATTACAGTATGCAACTATaaataatttatatttttataagaagatt
tGTAGGATCAACATGCATTTAATTTTAACTTAAGTCCACTATTGAATTTC
GGTTTCTATTGTTTTGTGTAAATATTTCACGTTTTAATAATTATATAGaa
ttaaaataatttacttGGTGTGCCAGAAATATgtaagttatttttgattt
ga

Coding sequence (CDS) from alignment at scaffold_259:6622..7773+

>TCONS_00055773 ID=TCONS_00055773|Name=TCONS_00055773|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_259:6622..7773+ (Clytia hemisphaerica)
GTTTTAACGAAACCAAATTTTCAATCCCATTGCTGCATACTGAGgttatt
tttttcatggattCATTTTAAACCAACAACACTGAACAACAGtctaatga
aaacaatcaaaagacttttgtTGAAAAGGGTAATTATGGCAACAAGATGT
CTCTCCACAAACACTTCACAATTCAAACTGATCATGAAGGAAGGTGACTT
GTTTACTTGTCCTGCAATTGAAAGTCTTGCTCATTGTGTGAGTGTTGATC
TTCGCATGGGAAAGGGTATTGCTGTTAACTTTAAGAAAGAGTTTGGACAA
GTTGGAGTATTGAAGAAGCAGGGAGCAAAAGTTGGTGGATTTGCCGTGTT
AAAGGTTGAAGAAAGATATGTTTATTATTTggttacaaaagaaaaattct
cAGATAAACCTACTTATAAAACAATAGAATCATCACTAAAAGCTATGTGC
TCTCATTGTGTAGCTCATGATGTGAAACTAATTTCAATGCCAAAGATTGG
TTCTGGGCTTGACAAACTAGATTGGAAACGTGTTCGTGACATCATttgta
gaattttttcaaacactGATATCCAAATCACAGTTTATGTTTACCAGCCg
ccaaaattaggaaaaaaaacGAGCTGAGTTTTAACGAAACCAAATTTTCA
ATCCCATTGCTGCATACTGAGgttatttttttcatggattCATTTTAAAC
CAACAACACTGAACAACAGtctaatgaaaacaatcaaaagacttttgtTG
AAAAGGGTAATTATGGCAACAAGATGTCTCTCCACAAACACTTCACAATT
CAAACTGATCATGAAGGAAGGTGACTTGTTTACTTGTCCTGCAATTGAAA
GTCTTGCTCATTGTGTGAGTGTTGATCTTCGCATGGGAAAGGGTATTGCT
GTTAACTTTAAGAAAGAGTTTGGACAAGTTGGAGTATTGAAGAAGCAGGG
AGCAAAAGTTGGTGGATTTGCCGTGTTAAAGGTTGAAGAAAGATATGTTT
ATTATTTggttacaaaagaaaaattctcAGATAAACCTACTTATAAAACA
ATAGAATCATCACTAAAAGCTATGTGCTCTCATTGTGTAGCTCATGATGT
GAAACTAATTTCAATGCCAAAGATTGGTTCTGGGCTTGACAAACTAGATT
GGAAACGTGTTCGTGACATCATttgtagaattttttcaaacactGATATC
CAAATCACAGTTTATGTTTACCAGCCgccaaaattaggaaaaaaaacGAG
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035115XLOC_035115Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055773-proteinTCONS_00055773-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055773-exon-scaffold_259-1491911889:6622..6667TCONS_00055773-exon-scaffold_259-1491911889:6622..6667Clytia hemisphaericaexon
TCONS_00055773-exon-scaffold_259-1510915933:6622..6667TCONS_00055773-exon-scaffold_259-1510915933:6622..6667Clytia hemisphaericaexon
TCONS_00055773-exon-scaffold_259-1575043694:6622..6667TCONS_00055773-exon-scaffold_259-1575043694:6622..6667Clytia hemisphaericaexon
TCONS_00055773-exon-scaffold_259-1491911889:6901..7773TCONS_00055773-exon-scaffold_259-1491911889:6901..7773Clytia hemisphaericaexon
TCONS_00055773-exon-scaffold_259-1510915933:6901..7773TCONS_00055773-exon-scaffold_259-1510915933:6901..7773Clytia hemisphaericaexon
TCONS_00055773-exon-scaffold_259-1575043694:6901..7773TCONS_00055773-exon-scaffold_259-1575043694:6901..7773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_259supercontigscaffold_259:6622..7773 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.40143	7.59066	13.7471	15.8652	2.72842	2.01166	4.95529	3.40352	5.01504	4.12565	3.03646	3.04802	2.78306	2.33688	3.99728	5.01742	8.86661	5.52797	3.45444	5.13349	4.1179	3.94328	10.0378	10.0281	2.96978	3.27933	3.36192	1.05218	5.67864	5.03853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002589Macro_dom
Blast
[Close]
BLAST of TCONS_00055773 vs. Swiss-Prot (Human)
Match: OARD1 (O-acetyl-ADP-ribose deacetylase 1 OS=Homo sapiens GN=OARD1 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.313e-45
Identity = 75/147 (51.02%), Postives = 101/147 (68.71%), Query Frame = 3 
Query:  153 LSTNTSQFKLIMKEGDLFTCPAIESLAHCVSVDLRMGKGIAVNFKKEFGQVGVLKKQGAKVGGFAVLKVEERYVYYLVTKEKFSDKPTYKTIESSLKAMCSHCVAHDVKLISMPKIGSGLDKLDWKRVRDIICRIFSNTDIQITVYV 593
            L+ +    ++   +GDLF CP  +SLAHC+S D RMG GIAV FKK+FG V  L  Q  K G  AVLK + RY+YYL+TK++ S KPTY+ ++ SL+AM SHC+ + V  +SMP+IG GLD+L W+ V  +I  +F  TDI+ITVY 
Sbjct:    5 LNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYT 151
The following BLAST results are available for this feature:
BLAST of TCONS_00055773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OARD11.313e-4551.02O-acetyl-ADP-ribose deacetylase 1 OS=Homo sapiens ... [more]
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