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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055795 ID=TCONS_00055795|Name=TCONS_00055795|organism=Clytia hemisphaerica|type=transcript|length=2148bp
ACGCAATTAAAATCTTTCGTCTTgcgttttgaaaatatttatactATATA
GAGTGAAATTTTTCAGTGACTTCAATGCGTATCGTATCCACGTTGACgac
aaagtttgaatttttttttgaaaattcttttccgcTTTTATACAAAGAAA
TGATTGAGAGTGATATCTTGTAGTTCATAAGGAAGATTTTTCAATCCATC
GTAATATTGGTTAGAAAAAGGAGATACTGGAACTCGGTGGTTTCAAAAGA
TGAACAACCACAGCGACCCTCAAAAGCCAATCACCGATGACAATCATGCG
CATCATGTCCACGGTCCCAGGGAAGAGAGTGGCAAAGCGGAAATCATCCT
GGTTACAATATATGccatcattttcatcatgggtCTGGTCAGCAATGCTC
TTATTTTCTACTATTTCCGATTCAAGCGTCGTCGACGAGGTAAAGGAACA
GCTATCACCGAGCGATTATTCTCCTACCTTGCCATGGTAGATTTCATCGC
TTCCATCATCAATCCTATTTATCACGCCCATGATATCTTGGGTGGTCAAT
GGTACTACGGAACATTCTTGTGCAAATTATTCGAACCCATTGGAATTATT
TTGATAACCAATTCAGGAGGCATTTTCATCGTCATCGCATTCGATCGCGA
GCGCACGATAACGTTTGCTTCACTTCGCCATTTTACAAAGTCCACCATCA
GAAGTGCGCTCGTTTTCGTGGTTGTTTACTCGACCGCTATAAACGCATAT
TTGTTTCATGATTTCGAGGTTTCGAACGGCCGTTGTGCAGATAAACTGAC
CATGGATGAGAAGACATACTGGATACCGCGAATAGCGAGTTTTATATTAC
GTGATTGTATGCTTATCTTTATCTTTGCTTTTACGAACATTCGAATAGTT
TCGCGGAAGTTTGCTCATTATGAGACATGGCGGTTGGGAACGTTATGGGA
GAAACGTAAGCAAGACAGTTTGAAGTTGGTTCGAATGATAAATGTAATGA
TCATTGTATATTTCATGGTGATGGCTCCTTATGATATTCTGATGGCTACC
TTCTTGGTATCCCATTTAAGCGATCATTCTATCGAACGTTCTGGACCTGT
TGTTACCACGTCCTCTTACTTAAAATGTTTAGCGATGAGTAGCTCTTGTT
TGAACTTTTTCGTTTATCTCTACATGCACAAAGACTTCAAAAAGTTCCTG
AGGAGAATGACGTaatcaatgtcaattgaatattTACCTGGTTACTAAGC
TTCTCAAGACACTTTACAGTCCTTCTATCATTTGGATAATCGTTAGCAAC
TTTTTACTGCAAACTTTTCATTTGACTATGAAAAGCAGTGAAAATAAGGT
GCCTGTTAAAAAACTATTGTCTAGTTGAAACTATACGGACTGATGAATAC
TGTCAGGGGAATTTATTCAGTTATCAAATTGATGACTACGCAcgcttttt
ttgtaagaatacactttataagaatgtctatgatgaaaatggccagaaaa
ttaagaatatgctaagaatatcaccatcatggaatttttcttctcaagct
aagaatgccatttttagagcattttcaattataatttgcCAACTACCCCC
CCCTTCCCCAAGTAAGGCTCCTGGGGCATTTCCGGACACTGGTgacctag
actggagtcgtttataatgcgtgtaatactaataataccaatactactac
taataataatacgggatttagtttgtataaacgactggaagaatccggtg
ttccagtcttatagatacaggggcgagctacgcagaaacttgcgtagcga
gaaaacaatttatcaagcaacaacaaactctcaaaacgaaatcaactcaa
atgaaaaactttcaatacacaaatccacacatattttttttcttaagaat
tattttgagcaggaaaaaattataattgcaatattgacacttttcttttg
tttcgagttagtgcacaaaggtttctagacgactaaaattgttccattca
ttactttttgctttatttctactatgtataaattagtcgtctagcttgct
agactactgGTGAccgaatttctttttcttcgaaATCGCTCATCGTCACA
TTCGAGGAGTTTATGATTACACGTGATCAATCAGAAAAATTCAACGAG Run BLAST on NCBI protein sequence of TCONS_00055795-protein >TCONS_00055795-protein ID=TCONS_00055795-protein|Name=TCONS_00055795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MNNHSDPQKPITDDNHAHHVHGPREESGKAEIILVTIYAIIFIMGLVSNA
LIFYYFRFKRRRRGKGTAITERLFSYLAMVDFIASIINPIYHAHDILGGQ
WYYGTFLCKLFEPIGIILITNSGGIFIVIAFDRERTITFASLRHFTKSTI
RSALVFVVVYSTAINAYLFHDFEVSNGRCADKLTMDEKTYWIPRIASFIL
RDCMLIFIFAFTNIRIVSRKFAHYETWRLGTLWEKRKQDSLKLVRMINVM
IIVYFMVMAPYDILMATFLVSHLSDHSIERSGPVVTTSSYLKCLAMSSSC
LNFFVYLYMHKDFKKFLRRMT Run BLAST on NCBI transcript from alignment at scaffold_259:54820..56967 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055795 ID=TCONS_00055795|Name=TCONS_00055795|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at scaffold_259:54820..56967 (Clytia hemisphaerica)
CTCGTTGAATTTTTCTGATTGATCACGTGTAATCATAAACTCCTCGAATG
TGACGATGAGCGATttcgaagaaaaagaaattcggTCACcagtagtctag
caagctagacgactaatttatacatagtagaaataaagcaaaaagtaatg
aatggaacaattttagtcgtctagaaacctttgtgcactaactcgaaaca
aaagaaaagtgtcaatattgcaattataattttttcctgctcaaaataat
tcttaagaaaaaaaatatgtgtggatttgtgtattgaaagtttttcattt
gagttgatttcgttttgagagtttgttgttgcttgataaattgttttctc
gctacgcaagtttctgcgtagctcgcccctgtatctataagactggaaca
ccggattcttccagtcgtttatacaaactaaatcccgtattattattagt
agtagtattggtattattagtattacacgcattataaacgactccagtct
aggtcACCAGTGTCCGGAAATGCCCCAGGAGCCTTACTTGGGGAAGGGGG
GGGTAGTTGgcaaattataattgaaaatgctctaaaaatggcattcttag
cttgagaagaaaaattccatgatggtgatattcttagcatattcttaatt
ttctggccattttcatcatagacattcttataaagtgtattcttacaaaa
aaagcgTGCGTAGTCATCAATTTGATAACTGAATAAATTCCCCTGACAGT
ATTCATCAGTCCGTATAGTTTCAACTAGACAATAGTTTTTTAACAGGCAC
CTTATTTTCACTGCTTTTCATAGTCAAATGAAAAGTTTGCAGTAAAAAGT
TGCTAACGATTATCCAAATGATAGAAGGACTGTAAAGTGTCTTGAGAAGC
TTAGTAACCAGGTAaatattcaattgacattgattACGTCATTCTCCTCA
GGAACTTTTTGAAGTCTTTGTGCATGTAGAGATAAACGAAAAAGTTCAAA
CAAGAGCTACTCATCGCTAAACATTTTAAGTAAGAGGACGTGGTAACAAC
AGGTCCAGAACGTTCGATAGAATGATCGCTTAAATGGGATACCAAGAAGG
TAGCCATCAGAATATCATAAGGAGCCATCACCATGAAATATACAATGATC
ATTACATTTATCATTCGAACCAACTTCAAACTGTCTTGCTTACGTTTCTC
CCATAACGTTCCCAACCGCCATGTCTCATAATGAGCAAACTTCCGCGAAA
CTATTCGAATGTTCGTAAAAGCAAAGATAAAGATAAGCATACAATCACGT
AATATAAAACTCGCTATTCGCGGTATCCAGTATGTCTTCTCATCCATGGT
CAGTTTATCTGCACAACGGCCGTTCGAAACCTCGAAATCATGAAACAAAT
ATGCGTTTATAGCGGTCGAGTAAACAACCACGAAAACGAGCGCACTTCTG
ATGGTGGACTTTGTAAAATGGCGAAGTGAAGCAAACGTTATCGTGCGCTC
GCGATCGAATGCGATGACGATGAAAATGCCTCCTGAATTGGTTATCAAAA
TAATTCCAATGGGTTCGAATAATTTGCACAAGAATGTTCCGTAGTACCAT
TGACCACCCAAGATATCATGGGCGTGATAAATAGGATTGATGATGGAAGC
GATGAAATCTACCATGGCAAGGTAGGAGAATAATCGCTCGGTGATAGCTG
TTCCTTTACCTCGTCGACGACGCTTGAATCGGAAATAGTAGAAAATAAGA
GCATTGCTGACCAGacccatgatgaaaatgatggCATATATTGTAACCAG
GATGATTTCCGCTTTGCCACTCTCTTCCCTGGGACCGTGGACATGATGCG
CATGATTGTCATCGGTGATTGGCTTTTGAGGGTCGCTGTGGTTGTTCATC
TTTTGAAACCACCGAGTTCCAGTATCTCCTTTTTCTAACCAATATTACGA
TGGATTGAAAAATCTTCCTTATGAACTACAAGATATCACTCTCAATCATT
TCTTTGTATAAAAgcggaaaagaattttcaaaaaaaaattcaaactttgt
cGTCAACGTGGATACGATACGCATTGAAGTCACTGAAAAATTTCACTCTA
TATagtataaatattttcaaaacgcAAGACGAAAGATTTTAATTGCGT Coding sequence (CDS) from alignment at scaffold_259:54820..56967 >TCONS_00055795 ID=TCONS_00055795|Name=TCONS_00055795|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_259:54820..56967 (Clytia hemisphaerica)
ttACGTCATTCTCCTCAGGAACTTTTTGAAGTCTTTGTGCATGTAGAGAT
AAACGAAAAAGTTCAAACAAGAGCTACTCATCGCTAAACATTTTAAGTAA
GAGGACGTGGTAACAACAGGTCCAGAACGTTCGATAGAATGATCGCTTAA
ATGGGATACCAAGAAGGTAGCCATCAGAATATCATAAGGAGCCATCACCA
TGAAATATACAATGATCATTACATTTATCATTCGAACCAACTTCAAACTG
TCTTGCTTACGTTTCTCCCATAACGTTCCCAACCGCCATGTCTCATAATG
AGCAAACTTCCGCGAAACTATTCGAATGTTCGTAAAAGCAAAGATAAAGA
TAAGCATACAATCACGTAATATAAAACTCGCTATTCGCGGTATCCAGTAT
GTCTTCTCATCCATGGTCAGTTTATCTGCACAACGGCCGTTCGAAACCTC
GAAATCATGAAACAAATATGCGTTTATAGCGGTCGAGTAAACAACCACGA
AAACGAGCGCACTTCTGATGGTGGACTTTGTAAAATGGCGAAGTGAAGCA
AACGTTATCGTGCGCTCGCGATCGAATGCGATGACGATGAAAATGCCTCC
TGAATTGGTTATCAAAATAATTCCAATGGGTTCGAATAATTTGCACAAGA
ATGTTCCGTAGTACCATTGACCACCCAAGATATCATGGGCGTGATAAATA
GGATTGATGATGGAAGCGATGAAATCTACCATGGCAAGGTAGGAGAATAA
TCGCTCGGTGATAGCTGTTCCTTTACCTCGTCGACGACGCTTGAATCGGA
AATAGTAGAAAATAAGAGCATTGCTGACCAGacccatgatgaaaatgatg
gCATATATTGTAACCAGGATGATTTCCGCTTTGCCACTCTCTTCCCTGGG
ACCGTGGACATGATGCGCATGATTGTCATCGGTGATTGGCTTTTGAGGGT
CGCTGTGGTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055795-exon-scaffold_259-1491911889:54820..56967 | TCONS_00055795-exon-scaffold_259-1491911889:54820..56967 | Clytia hemisphaerica | exon |
| TCONS_00055795-exon-scaffold_259-1510915933:54820..56967 | TCONS_00055795-exon-scaffold_259-1510915933:54820..56967 | Clytia hemisphaerica | exon |
| TCONS_00055795-exon-scaffold_259-1575043694:54820..56967 | TCONS_00055795-exon-scaffold_259-1575043694:54820..56967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_259 | supercontig | scaffold_259:54820..56967 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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