TCONS_00055801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055801
Unique NameTCONS_00055801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055801 ID=TCONS_00055801|Name=TCONS_00055801|organism=Clytia hemisphaerica|type=transcript|length=351bp
ccgttttacaaaatttttgctgtggttGACCAAAATGGATTGACACTTAa
cttttaatgttgaaaaggtacTGGAAATACTATATTAgtccaagtttttt
gaaaaaaatggccttCCACGTGCTCCGGGAATCTCCAGGTATTTTGCGTC
AACTCTGCGTACAACGCGTAAACATGGCTTTaagtctataaaagtgcatt
ttctcatcaaaaaacaTATTGCCAACAAAATATATCATCCTTTTGCTCTC
TCAAATCTGTTTATATCATTTACAGTTGAATTTCAGTGTTGATCTTAGGG
AAACGTGTCTTCAGGTTGAACGTCAATCATGCATAGTTTTACTTAATTTN
N
Run BLAST on NCBI

transcript from alignment at scaffold_26:134211..134744-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055801 ID=TCONS_00055801|Name=TCONS_00055801|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at scaffold_26:134211..134744- (Clytia hemisphaerica)
CCGTTTTACAAAATTTTTGCTGTGGTTGACCAAAATGGATTGACACTTAA
CTTTTAATGTTGAAAAGGTACTGGAAATACTATATTAGTCCAAGTTTTTT
GAAAAAAATGGCCTTCCACGTGCTCCGGGAATCTCCAGGTATTTTGCGTC
AACTCTGCGTACAACGCGTAAACATGGCTTTAAGTCAATAGACCTTTTTT
CAAAGAGGACGTCCTGTTTAATAATTATGTAGTCCAGCCATAAAAACAAT
GATAGAGCCATGCATAATTACTGTATCATGCATATTGTAATAATTATGCA
TGGTTTTATCATTGTTTTCCTGCTGGACTACATAATTATTCAACAGGGTG
GCCTCTTTGAAAAAAGGTCTATAAAAGTGCATTTTCTCATCAAAAAACAT
ATTGCCAACAAAATATATCATCCTTTTGCTCTCTCAAATCTGTTTATATC
ATTTACAGTTGAATTTCAGTGTTGATCTTAGGGAAACGTGTCTTCAGGTT
GAACGTCAATCATGCATAGTTTTACTTAATTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035127XLOC_035127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055801-exon-scaffold_26-1575043694:134562..134744TCONS_00055801-exon-scaffold_26-1575043694:134562..134744Clytia hemisphaericaexon
TCONS_00055801-exon-scaffold_26-1575043694:134211..134378TCONS_00055801-exon-scaffold_26-1575043694:134211..134378Clytia hemisphaericaexon
TCONS_00055801-exon-scaffold_26-1510915933:134562..134744TCONS_00055801-exon-scaffold_26-1510915933:134562..134744Clytia hemisphaericaexon
TCONS_00055801-exon-scaffold_26-1510915933:134211..134378TCONS_00055801-exon-scaffold_26-1510915933:134211..134378Clytia hemisphaericaexon
TCONS_00055801-exon-scaffold_26-1491911889:134562..134744TCONS_00055801-exon-scaffold_26-1491911889:134562..134744Clytia hemisphaericaexon
TCONS_00055801-exon-scaffold_26-1491911889:134211..134378TCONS_00055801-exon-scaffold_26-1491911889:134211..134378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:134211..134744 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00338	0	0.33359	0	29.7552	20.2032	26.3868	24.3907	2.58307	9.55964	16.0806	2.04422	10.4777	3.32452	0.514471	0	3.48038	2.16862	0	1.2344	1.91905	0	1.74587	0	4.4058	5.91863	0	1.63057	2.21772	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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