TCONS_00055803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055803
Unique NameTCONS_00055803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055803 ID=TCONS_00055803|Name=TCONS_00055803|organism=Clytia hemisphaerica|type=transcript|length=535bp
TAAAGAGTgggttaaaaacaagttaaaggCTCTCGCAAGACTTCTAGGGC
GTTTAGCAGAACAAGTCGCTAAAGCTTTGCCTGGAGCCATTGGATCGCTT
CTCGCTGCCATAttaaatttgttcaaaaaagtGGCGTTAGCTGCTGCAAA
TTACActtggatattcttaacgtCCGTTGGTGCTTTAATAGGCTATGAAA
tacatcaatatttttattcttcacgaaagaaaaaaaactagaaGTATCGC
CAAATCGCTAAAATCGCTGCCACACCTATGCCAATGATAGCTGTTTTCTC
GTCTACGTGATCGTCAAGAGTATGAGCTCTTTTTCGTTCTATTAGATGTC
TATCATCAATACTTTTAGTTGAAATCTGCGGTGATTTTTTCAAGATCACC
GGAGTTGGTTTTACAACCTTTCCTAAACCATGACCTGAGCTGTTGATTAC
AATCTTGTCGTTATACCCTTCCATGACTTGATTCAAAGGCTTCAACAACA
TATTTGATGGTAACATATAGAGCCCTTTGCCTACG
Run BLAST on NCBI

transcript from alignment at scaffold_26:3177..3711

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055803 ID=TCONS_00055803|Name=TCONS_00055803|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_26:3177..3711 (Clytia hemisphaerica)
CGTAGGCAAAGGGCTCTATATGTTACCATCAAATATGTTGTTGAAGCCTT
TGAATCAAGTCATGGAAGGGTATAACGACAAGATTGTAATCAACAGCTCA
GGTCATGGTTTAGGAAAGGTTGTAAAACCAACTCCGGTGATCTTGAAAAA
ATCACCGCAGATTTCAACTAAAAGTATTGATGATAGACATCTAATAGAAC
GAAAAAGAGCTCATACTCTTGACGATCACGTAGACGAGAAAACAGCTATC
ATTGGCATAGGTGTGGCAGCGATTTTAGCGATTTGGCGATACttctagtt
ttttttctttcgtgaagaataaaaatattgatgtaTTTCATAGCCTATTA
AAGCACCAACGGacgttaagaatatccaagTGTAATTTGCAGCAGCTAAC
GCCacttttttgaacaaatttaaTATGGCAGCGAGAAGCGATCCAATGGC
TCCAGGCAAAGCTTTAGCGACTTGTTCTGCTAAACGCCCTAGAAGTCTTG
CGAGAGcctttaacttgtttttaacccACTCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035128XLOC_035128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055803-exon-scaffold_26-1491911889:3177..3711TCONS_00055803-exon-scaffold_26-1491911889:3177..3711Clytia hemisphaericaexon
TCONS_00055803-exon-scaffold_26-1510915933:3177..3711TCONS_00055803-exon-scaffold_26-1510915933:3177..3711Clytia hemisphaericaexon
TCONS_00055803-exon-scaffold_26-1575043694:3177..3711TCONS_00055803-exon-scaffold_26-1575043694:3177..3711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:3177..3711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.212248	0.36966	0.241103	0	0.115972	0.139915	0.130987	0	0.227187	0	0.0724785	0.217133	0.225495	0	0	0.326785	0.251208	0	0.242114	0.105221	0.307937	0	0	0.116843	0.10428	1.19379	0.637024	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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