TCONS_00055807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055807
Unique NameTCONS_00055807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055807 ID=TCONS_00055807|Name=TCONS_00055807|organism=Clytia hemisphaerica|type=transcript|length=569bp
aatcaaaatgcaaagtttctaaaatttttagctGTTTAAAAAAACAACGT
ATCGTTCCATCTTTCCTCGTGTTATGTTTATAAGAGAAGTGTAGTATAGT
AGTATGAATTTTTGAGATCACTACAATGCTATCCCGATTTTACAAATgct
tttgaaaacttaacctttaTATGAATTTTTCGAACACACATGACGCTTTC
AATGCACACCTTGCTCTTGATTCTCGATACTATAAGTCATTACATACAAA
TGTTTGATACGTTCTTAAAAAGAAGGATTTCTTACCATATTGCAAAGCTT
TCTTTGGTTCCTTCCATCCTTTTTCTTTTCGTACCCTATTCAGTCTCGTT
CataaatcaaagttaatttctCATATACGGTGCATTGAGCTTATGATCTA
ACAAActatttttgatttcctttgaAGTCTCTTTTTGTATCTTGACATTA
TCCAGTGCTTTCTCAGCTTTTCTGAGTTTTGCTGCCTACTCCTGTAAACG
TCTTCTAGTACACGACCTTGCGTTGCAAATGAGATGTCAAGTCTACTCCG
TTCCTCCCTTTTATAGCGC
Run BLAST on NCBI

transcript from alignment at scaffold_26:28999..29567

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055807 ID=TCONS_00055807|Name=TCONS_00055807|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at scaffold_26:28999..29567 (Clytia hemisphaerica)
GCGCTATAAAAGGGAGGAACGGAGTAGACTTGACATCTCATTTGCAACGC
AAGGTCGTGTACTAGAAGACGTTTACAGGAGTAGGCAGCAAAACTCAGAA
AAGCTGAGAAAGCACTGGATAATGTCAAGATACAAAAAGAGACTtcaaag
gaaatcaaaaatagTTTGTTAGATCATAAGCTCAATGCACCGTATATGag
aaattaactttgatttatGAACGAGACTGAATAGGGTACGAAAAGAAAAA
GGATGGAAGGAACCAAAGAAAGCTTTGCAATATGGTAAGAAATCCTTCTT
TTTAAGAACGTATCAAACATTTGTATGTAATGACTTATAGTATCGAGAAT
CAAGAGCAAGGTGTGCATTGAAAGCGTCATGTGTGTTCGAAAAATTCATA
taaaggttaagttttcaaaagcATTTGTAAAATCGGGATAGCATTGTAGT
GATCTCAAAAATTCATACTACTATACTACACTTCTCTTATAAACATAACA
CGAGGAAAGATGGAACGATACGTTGTTTTTTTAAACagctaaaaatttta
gaaactttgcattttgatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035132XLOC_035132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055807-exon-scaffold_26-1491911889:28999..29567TCONS_00055807-exon-scaffold_26-1491911889:28999..29567Clytia hemisphaericaexon
TCONS_00055807-exon-scaffold_26-1510915933:28999..29567TCONS_00055807-exon-scaffold_26-1510915933:28999..29567Clytia hemisphaericaexon
TCONS_00055807-exon-scaffold_26-1575043694:28999..29567TCONS_00055807-exon-scaffold_26-1575043694:28999..29567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:28999..29567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.65288	8.21903	3.25508	3.73165	0.398698	0.352816	0.819741	0.660507	0.896725	0.957596	1.15411	0.506904	0.24175	0.603368	0.335757	0.735902	0.902756	1.85174	0	0.438495	0.587297	1.45301	2.77078	2.06225	0.58107	1.22297	0.881935	0.700733	2.24205	1.76072
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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