TCONS_00055812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055812
Unique NameTCONS_00055812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055812 ID=TCONS_00055812|Name=TCONS_00055812|organism=Clytia hemisphaerica|type=transcript|length=448bp
TACGTTCTCGTTTGCTTCGTCTTTCAGGATGTTTTTATTGTGACTCTGta
tgatatttttcatgtttttggtgCAACTATAGCTGACTTTGACAGTGTTG
CGGTTGAATATTTTGTTGAGTCTGTGGTGTTTTGGAAAGTGCTTATCTAT
GAGTTGCAGAAACCTTCGTGCAACTTTCGTTTCGACGTTCTGGTTGTACG
GTGGGTTGAACCAAGTGATTTTACGCTTACGGTTATTTGTACGGTTGTTA
TCTGCAATGGTAGGATTGTAGGATAGCTGGATGCTGTAACCACTATCTTT
CAGTGCCTTTTCATACGGCTTTTTGGCTTGGTTGAATATGTGCTCGTTCG
ATGAATGGTTAGACAGTCTTTGTTCGATAGTTTTCGGAATTTGCTTGATC
ACGTTCGGTGGATGGTTTGACTGTTTGTTAATGTATTGAATCTTGTTG
Run BLAST on NCBI

protein sequence of TCONS_00055812-protein

>TCONS_00055812-protein ID=TCONS_00055812-protein|Name=TCONS_00055812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
NKIQYINKQSNHPPNVIKQIPKTIEQRLSNHSSNEHIFNQAKKPYEKALK
DSGYSIQLSYNPTIADNNRTNNRKRKITWFNPPYNQNVETKVARRFLQLI
DKHFPKHHRLNKIFNRNTVKVSYSCTKNMKNIIQSHNKNILKDEANENV
Run BLAST on NCBI

transcript from alignment at scaffold_26:122392..122839

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055812 ID=TCONS_00055812|Name=TCONS_00055812|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at scaffold_26:122392..122839 (Clytia hemisphaerica)
CAACAAGATTCAATACATTAACAAACAGTCAAACCATCCACCGAACGTGA
TCAAGCAAATTCCGAAAACTATCGAACAAAGACTGTCTAACCATTCATCG
AACGAGCACATATTCAACCAAGCCAAAAAGCCGTATGAAAAGGCACTGAA
AGATAGTGGTTACAGCATCCAGCTATCCTACAATCCTACCATTGCAGATA
ACAACCGTACAAATAACCGTAAGCGTAAAATCACTTGGTTCAACCCACCG
TACAACCAGAACGTCGAAACGAAAGTTGCACGAAGGTTTCTGCAACTCAT
AGATAAGCACTTTCCAAAACACCACAGACTCAACAAAATATTCAACCGCA
ACACTGTCAAAGTCAGCTATAGTTGcaccaaaaacatgaaaaatatcata
CAGAGTCACAATAAAAACATCCTGAAAGACGAAGCAAACGAGAACGTA

Coding sequence (CDS) from alignment at scaffold_26:122392..122839

>TCONS_00055812 ID=TCONS_00055812|Name=TCONS_00055812|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_26:122392..122839 (Clytia hemisphaerica)
AACAAGATTCAATACATTAACAAACAGTCAAACCATCCACCGAACGTGAT
CAAGCAAATTCCGAAAACTATCGAACAAAGACTGTCTAACCATTCATCGA
ACGAGCACATATTCAACCAAGCCAAAAAGCCGTATGAAAAGGCACTGAAA
GATAGTGGTTACAGCATCCAGCTATCCTACAATCCTACCATTGCAGATAA
CAACCGTACAAATAACCGTAAGCGTAAAATCACTTGGTTCAACCCACCGT
ACAACCAGAACGTCGAAACGAAAGTTGCACGAAGGTTTCTGCAACTCATA
GATAAGCACTTTCCAAAACACCACAGACTCAACAAAATATTCAACCGCAA
CACTGTCAAAGTCAGCTATAGTTGcaccaaaaacatgaaaaatatcataC
AGAGTCACAATAAAAACATCCTGAAAGACGAAGCAAACGAGAACGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035137XLOC_035137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055812-exon-scaffold_26-1491911889:122392..122839TCONS_00055812-exon-scaffold_26-1491911889:122392..122839Clytia hemisphaericaexon
TCONS_00055812-exon-scaffold_26-1510915933:122392..122839TCONS_00055812-exon-scaffold_26-1510915933:122392..122839Clytia hemisphaericaexon
TCONS_00055812-exon-scaffold_26-1575043694:122392..122839TCONS_00055812-exon-scaffold_26-1575043694:122392..122839Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055812-proteinTCONS_00055812-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:122392..122839 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.496043	0.492687	0.884517	0	1.22036	0.833496	0.748312	0.375523	0.463486	0.864204	0.583514	0.491898	0	0.343106	1.00233	0.111435	0.799102	2.07782	1.22314	0.802054	0.240834	0	0.176463	1.56611	0.302178	0.72197	0	0.98071	1.10298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top