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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055818 ID=TCONS_00055818|Name=TCONS_00055818|organism=Clytia hemisphaerica|type=transcript|length=972bp
CGCTTTTtaaagccagcttcaacatccaaaggacttttagtgcgttcagc
tacagcttaaccggcgtgcgacgccgggtaccggctagtaaaGCAATAAT
GCTACTGTGACAGCCAGAAAATCTCATTAAAAAGTGGGCTAAAATCAATA
CCAAGAGCGGAaTACTTCCATCAATACTAAACGTAGAGGCAGAGTCAGTT
TCAcaaaaaaggaagaagaaaatctCTTGGAGGGTGTCAAGAAATATGGT
TTTGGTTGCTgggcgaaaattttgaaaaattatcatttcaatcCATGCCG
GACGAGTGTTTCATTGAAGGACAAGTACCGGACATTACAGAACCAGGGGA
AAGTGTAGTGTATTATTAATTTGTCCCCTTGTTTAGTGTAGTTTTTTGAC
CTCGGATCGATGCGATGCTTGAAAAGTTAAAGTTATCAAAATAGTGACGT
TTACTATTATGACTTGAAGAGTGAGGCCAATTTAGCTGAGATGGCATTTG
TGTCATAAAAGCTGGACATTGATATGGAATTTCAAAAGGATGAAATAACT
AAAAACGGACATAAAATGCATTTCCATGGTCCTATTTCATATTGTATACG
ATTTCAATACTTTTGTTATTggaatgatttttatttttcattccttttta
tttcaatttattatTCTTTAGTTGTAAATATTGTACATAATTGACCTCGT
ATAACCTTTGTGTGACTTATACATTACTCCAATGTCTGTCAAAGCTAGAC
TAATTCGCCTTTAATGTGTGTGTGATCTCTTTGTATGATAATCATCACCT
ATCTTAACTTCCATGTAATTTTTTGGACCTatcccggtggaggtcctata
aattaatgtttgttcgtccgttcgtccgtttgtctgttaccaacttttct
caggattgaatcataggaatcttttgatttttggtataaaggtgcaaaat
ggtggtggccaaaatgtgacgg Run BLAST on NCBI transcript from alignment at scaffold_260:48701..50069+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055818 ID=TCONS_00055818|Name=TCONS_00055818|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at scaffold_260:48701..50069+ (Clytia hemisphaerica)
CGCTTTTtaaagccagcttcaacatccaaaggacttttagtgcgttcagc
tacagcttaaccggcgtgcgacgccgggtaccggctagtaaaGCAATAAT
GCTACTGTGACAGCCAGAAAATCTCATTAAAAAGTGGGCTAAAATCAATA
CCAAGAGCGGAGTGAGTGTAACTGATTTGTTTATTGAAGTTAAGCTGTTT
AGCTCATAGAATGTGCACAGTTAGtataaatcttaaaatatttcttaacc
TACTCAAatacttttatatttgaatttaaaggttttatttttacataagt
gttcccgttttatGTCAGGCACATATCAGGACAGCGTTTCTCTATTGTTA
TGtgctgaataaaaaaaaaattttctttttcggaccaatcttgctccaca
tcctcgcctattcaatatcaaaaagcttataaatcaaaattaacgagtaa
gcaaacgatatcacacTTATCTGTCAcacctttttaaaaaactaattttt
taagAGGCATTGGATTACTTATAATTTTACAttaattcaactttttttca
tttcttagaTACTTCCATCAATACTAAACGTAGAGGCAGAGTCAGTTTCA
caaaaaaggaagaagaaaatctCTTGGAGGGTGTCAAGAAATATGGTTTT
GGTTGCTgggcgaaaattttgaaaaattatcatttcaatcCATGCCGGAC
GAGTGTTTCATTGAAGGACAAGTACCGGACATTACAGAACCAGGGGAAAG
TGTAGTGTATTATTAATTTGTCCCCTTGTTTAGTGTAGTTTTTTGACCTC
GGATCGATGCGATGCTTGAAAAGTTAAAGTTATCAAAATAGTGACGTTTA
CTATTATGACTTGAAGAGTGAGGCCAATTTAGCTGAGATGGCATTTGTGT
CATAAAAGCTGGACATTGATATGGAATTTCAAAAGGATGAAATAACTAAA
AACGGACATAAAATGCATTTCCATGGTCCTATTTCATATTGTATACGATT
TCAATACTTTTGTTATTggaatgatttttatttttcattcctttttattt
caatttattatTCTTTAGTTGTAAATATTGTACATAATTGACCTCGTATA
ACCTTTGTGTGACTTATACATTACTCCAATGTCTGTCAAAGCTAGACTAA
TTCGCCTTTAATGTGTGTGTGATCTCTTTGTATGATAATCATCACCTATC
TTAACTTCCATGTAATTTTTTGGACCTatcccggtggaggtcctataaat
taatgtttgttcgtccgttcgtccgtttgtctgttaccaacttttctcag
gattgaatcataggaatcttttgatttttggtataaaggtgcaaaatggt
ggtggccaaaatgtgacgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055818-exon-scaffold_260-1491911889:48701..48861 | TCONS_00055818-exon-scaffold_260-1491911889:48701..48861 | Clytia hemisphaerica | exon |
| TCONS_00055818-exon-scaffold_260-1510915933:48701..48861 | TCONS_00055818-exon-scaffold_260-1510915933:48701..48861 | Clytia hemisphaerica | exon |
| TCONS_00055818-exon-scaffold_260-1575043694:48701..48861 | TCONS_00055818-exon-scaffold_260-1575043694:48701..48861 | Clytia hemisphaerica | exon |
| TCONS_00055818-exon-scaffold_260-1491911889:49259..50069 | TCONS_00055818-exon-scaffold_260-1491911889:49259..50069 | Clytia hemisphaerica | exon |
| TCONS_00055818-exon-scaffold_260-1510915933:49259..50069 | TCONS_00055818-exon-scaffold_260-1510915933:49259..50069 | Clytia hemisphaerica | exon |
| TCONS_00055818-exon-scaffold_260-1575043694:49259..50069 | TCONS_00055818-exon-scaffold_260-1575043694:49259..50069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_260 | supercontig | scaffold_260:48701..50069 + |
Blast
The following BLAST results are available for this feature:
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