TCONS_00055824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055824
Unique NameTCONS_00055824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055824 ID=TCONS_00055824|Name=TCONS_00055824|organism=Clytia hemisphaerica|type=transcript|length=1097bp
GGAGCTTCTGTTTTATAACAAAATGAAAACTAATGTTGTACGGTAACTAA
AAATGTTCTGCCGTTCCGACACATTAACTACAACAAGCATAAATAAGATA
AAGATAAAAATACtaccaaaataaaataatgcGAAATTGAAATTACTtaa
ttaattgatgcaaataaaCCCCTGAAAATCGATATACATTATGCGGTATT
ATGGCATTAGCCTGCATTAGCgttaattttgaatatttttaattcGTTCT
TTTCAGAATAAACTTCGGTCTATTTATTATTGAATTAATTACGACTATTG
TAGTGGGGAATTGCAAAAAAATCGGATTacttgatctaatgaatcaagAA
AATACTATCGTATTAAATTATTAGGtagataaaaaatatatgcatTAGAT
ATAAAATGCAGAATCTGTGATAAAATGCATACAAAAGATAGATATAAACC
CTAAGATAATTACATGTATATTATGATACCataatgggattaattttcgc
aaatttttgatTAATGCTTTTTGCCGAAATAAGGTTAAAAGCTGGCAAAT
TCGCGAAAAGAAATCTTCGCGAAAATGACCCCATTTAGGTAAATAAAGAC
TCTAAGATAAAATTTCACGTATATATATGAAAAATACACAACTCTAAGAT
AAAAATGCATGTACATGAAAAATACACAACTCTCAGATAAAAATGTGCAT
GCACATGAAAAATACACAACTCTCAGATAAAAATGTGCATGCACATGAAA
AATACACAACTCTAAGATAAAAATGCATGTACATGAAAAATACACAACTA
ACTCTCAGATAAAAATGTGCATGCACAAGAAAAATATCAACCTGTATGAG
ATAAAAATATATGGAGTAGATAAAATACTAACTCTAGATAAAAACACATG
TAATAAGATAAAAACAAGTCTTGGATAAAAATACAAACTTTAAGATAAAA
TGAGACCTTTCAAGACCCAGACCAAAAGTGAGCCTAAGTTAAGGAATTTA
AgacaaaaaaacgtgtaacagtTAAAATTAgtataaaacttgttttctaG
ATCAACATTGTATTTCTTCCAATAATGAAACATTTGTAGAAGGGCTN
Run BLAST on NCBI

transcript from alignment at scaffold_260:13928..15140-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055824 ID=TCONS_00055824|Name=TCONS_00055824|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at scaffold_260:13928..15140- (Clytia hemisphaerica)
GGAGCTTCTGTTTTATAACAAAATGAAAACTAATGTTGTACGGTAACTAA
AAATGTTCTGCCGTTCCGACACATTAACTACAACAAGCATAAATAAGATA
AAGATAAAAATACTACCAAAATAAAATAATGCGAAATTGAAATTACTTAA
TTAATTGATGCAAATAAACCCCTGAAAATCGATATACATTATGCGGTATT
ATGGCATTAGCCTGCATTAGCGTTAATTTTGAATATTTTTAATTCGTTCT
TTTCAGAATAAACTTCGGTCTATTTATTATTGAATTAATTACGACTATTG
TAGTGGGGAATTGCAAAAAAATCGGATTACTTGATCTAATGAATCAAGAA
AATACTATCGTATTAAATTATTAGGTAGATAAAAAATATATGCATTAGAT
ATAAAATGCAGAATCTGTGATAAAATGCATACAAAAGATAGATATAAACC
CTAAGATAATTACATGTATATTATGATACCATAATGGGATTAATTTTCGC
AAATTTTTGATTAATGCTTTTTGCCGAAATAAGGTTAAAAGCTGGCAAAT
TCGCGAAAAGAAATCTTCGCGAAAATGACCCCATTTAGGTAAATAAAGAC
TCTAAGATAAAATTTCACGTATATATATGAAAAATACACAACTCTAAGAT
AAAAATGCATGTACATGAAAAATACACAACTCTCAGATAAAAATGTGCAT
GCACATGAAAAATACACAACTCTAAGATAAAAATGCATGTACATGAAAAA
TACACAACTCTCAGATAAAAATGTGCATGCACATGAAAAATACACAACTC
TAAGATAAAAATGCATGTACATGAAAAATACACAACTCTCAGATAAAAAT
GTGCATGCACATGAAAAATACACAACTCTAAGATAAAAATGCATGTACAT
GAAAAATACACAACTAACTCTCAGATAAAAATGTGCATGCACAAGAAAAA
TATCAACCTGTATGAGATAAAAATATATGGAGTAGATAAAATACTAACTC
TAGATAAAAACACATGTAATAAGATAAAAACAAGTCTTGGATAAAAATAC
AAACTTTAAGATAAAATGAGACCTTTCAAGACCCAGACCAAAAGTGAGCC
TAAGTTAAGGAATTTAAGACAAAAAAACGTGTAACAGTTAAAATTAGTAT
AAAACTTGTTTTCTAGATCAACATTGTATTTCTTCCAATAATGAAACATT
TGTAGAAGGGCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035145XLOC_035145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055824-exon-scaffold_260-1575043694:14477..15140TCONS_00055824-exon-scaffold_260-1575043694:14477..15140Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1575043694:14359..14398TCONS_00055824-exon-scaffold_260-1575043694:14359..14398Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1575043694:13928..14320TCONS_00055824-exon-scaffold_260-1575043694:13928..14320Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1510915933:14477..15140TCONS_00055824-exon-scaffold_260-1510915933:14477..15140Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1510915933:14359..14398TCONS_00055824-exon-scaffold_260-1510915933:14359..14398Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1510915933:13928..14320TCONS_00055824-exon-scaffold_260-1510915933:13928..14320Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1491911889:14477..15140TCONS_00055824-exon-scaffold_260-1491911889:14477..15140Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1491911889:14359..14398TCONS_00055824-exon-scaffold_260-1491911889:14359..14398Clytia hemisphaericaexon
TCONS_00055824-exon-scaffold_260-1491911889:13928..14320TCONS_00055824-exon-scaffold_260-1491911889:13928..14320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_260supercontigscaffold_260:13928..15140 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0823787	0.0980095	0	0	0.114334	0.169803	0.176518	0.132203	0.640211	0.230061	0.231895	0.589621	0.169716	0.127079	0.619462	0.158277	0	0.0568191	0.131583	0.0329611	1.38039	0.601494	0.235709	0.142091	0.0779759	0	1.48024	1.74787	2.40637	3.57076
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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