TCONS_00055826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055826
Unique NameTCONS_00055826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055826 ID=TCONS_00055826|Name=TCONS_00055826|organism=Clytia hemisphaerica|type=transcript|length=810bp
ATTTATCAGAGGCAGATCCGCATCGCAGGGTGTAAAGTAATAAACCTTGC
CTTCTACGACTAAACAAATAAATGGTCAAagtgaaaattaatttcttagT
GAACACTACAAAAGGTTCTTTCTCCGATGATTTTGTCGGAAATAAGCGAT
CGCCAACAGTGTGTTTGAAACACGCTGACCTAGTATCTACCTAATAATTT
AATACGATAGTATTTTcttgattcattagatcaagtAATCCGATTTTTTT
GTAATTCCCCACTTCAATAGTCGTAATTAATTCAATAATAAATAGACTGA
AGTTTATTCTGAAAAGAACgaattaaaaatattcaaaattaacGCTAATG
CAGGTTAATGCCATAATACCGCATAATGTATATCGATTTTCAGGGGttta
tttgcatcaattaattaAGTAATTTCAATTTCgcattattttattttggt
aGTATTTTTATCTTTATCTTATTTATGCTTGTTGTAGTTAATGTGTCGGA
ACGGCAGAACATTTTTAGTTACCGTACATCATTAGTTTTCATTTTGTTAT
AAAACAGAAGCTCCATTTCAGTAACTTGTAAACTTATTCAAACTTTACAT
TTAATTGTCGGTTGAGAAATAAATTTCACCTTGTTGTGTTATGATTTAAT
AGCTTTATTTAATTATAAACCttgatgattgaaaaattaaaatttttggc
aAACTTTGGGGAATATCTCAAAATCACACATTTCACGGATTTTGAGTTTT
AATGAAAGTCCCGCCCATAATTCTATCGAAACTTGAATAGCCGAGTCGTT
CATGAAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_260:6334..7143

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055826 ID=TCONS_00055826|Name=TCONS_00055826|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at scaffold_260:6334..7143 (Clytia hemisphaerica)
TTTTTTCATGAACGACTCGGCTATTCAAGTTTCGATAGAATTATGGGCGG
GACTTTCATTAAAACTCAAAATCCGTGAAATGTGTGATTTTGAGATATTC
CCCAAAGTTtgccaaaaattttaatttttcaatcatcaaGGTTTATAATT
AAATAAAGCTATTAAATCATAACACAACAAGGTGAAATTTATTTCTCAAC
CGACAATTAAATGTAAAGTTTGAATAAGTTTACAAGTTACTGAAATGGAG
CTTCTGTTTTATAACAAAATGAAAACTAATGATGTACGGTAACTAAAAAT
GTTCTGCCGTTCCGACACATTAACTACAACAAGCATAAATAAGATAAAGA
TAAAAATACtaccaaaataaaataatgcGAAATTGAAATTACTtaattaa
ttgatgcaaataaaCCCCTGAAAATCGATATACATTATGCGGTATTATGG
CATTAACCTGCATTAGCgttaattttgaatatttttaattcGTTCTTTTC
AGAATAAACTTCAGTCTATTTATTATTGAATTAATTACGACTATTGAAGT
GGGGAATTACAAAAAAATCGGATTacttgatctaatgaatcaagAAAATA
CTATCGTATTAAATTATTAGGTAGATACTAGGTCAGCGTGTTTCAAACAC
ACTGTTGGCGATCGCTTATTTCCGACAAAATCATCGGAGAAAGAACCTTT
TGTAGTGTTCActaagaaattaattttcactTTGACCATTTATTTGTTTA
GTCGTAGAAGGCAAGGTTTATTACTTTACACCCTGCGATGCGGATCTGCC
TCTGATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035146XLOC_035146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055826-exon-scaffold_260-1491911889:6334..7143TCONS_00055826-exon-scaffold_260-1491911889:6334..7143Clytia hemisphaericaexon
TCONS_00055826-exon-scaffold_260-1510915933:6334..7143TCONS_00055826-exon-scaffold_260-1510915933:6334..7143Clytia hemisphaericaexon
TCONS_00055826-exon-scaffold_260-1575043694:6334..7143TCONS_00055826-exon-scaffold_260-1575043694:6334..7143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_260supercontigscaffold_260:6334..7143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24071	1.78036	0.898564	0.792939	4.9955	1.88615	1.60901	1.47321	1.45466	1.16083	2.38536	1.51519	1.1378	0.834441	0.709736	1.63624	1.4567	1.37028	1.22735	0.767627	2.65453	3.32574	2.76823	2.72462	0.0858879	0.242476	6.86867	4.28473	7.63597	5.30478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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