TCONS_00055832 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055832
Unique Name	TCONS_00055832
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	811

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_261:30374..33004+
coding sequence from alignment at scaffold_261:30374..33004+

transcript sequence

>TCONS_00055832 ID=TCONS_00055832|Name=TCONS_00055832|organism=Clytia hemisphaerica|type=transcript|length=811bp
GTCCCGTAAACACACTTTGGTGCTACCAAAAAATAATTACCAGGACCTAC
CAGGAATTACCAAGAAGGAAAAACTTGCGTTATTAGagaaTGGCGACATT
TTCTACATATCAAAGACCAACACTAGTCCGTTGAAGTTGAATAATAGacc
ctcCAAAAAGAAACAACTACACAACGACACTACTACAGACAACAACAAAG
AGAGACCAAAGATCAAGCTGCTAAGCAAAAAAATAGAGATGGAAGAGCAA
GAGAATCAGAAGCgtaaagaaaagataaaagGCAAAGAAAGCAGCGGCAA
AAAATGAGAATGCTAGGCAGCCTCAAACGAAAAGGGTCAAATCAAGCGAT
GGAGAAAAGgctgataaagaaaaagaaaaagaagaaactagaaaAACAAC
TGCTGAAAAGAGACCAAAAGCCAAATATGACCCGAACATATTAATACCCA
AGTTTATGGAGGCTACCAAAGAACCCGAGAAAGATTTGTCATCTACTCCA
AAATTGCCAACCACCCCGCCATCCAAACCATCCACGTCCGCCACCCAAAC
CATCCACGTCCGCCACCATCACTAAACAAAAACCTGGCTATACCTACACC
TATCAGCCACCTGTAAATATATACCAAGAATTAGTAGTTCCTGAAGGAGC
AACAAGAAAGAGGAAAGCAAAGAAACTCGAATCAGATTGATTTACAAACA
ACCAGCCAAATTAATTTAAAACAGAATTTctaataaatttaattttgggc
ctatttgtttcatcgctatttttgctatatttacactcatctcaattttt
ttctatccAAA

Run BLAST on NCBI

protein sequence of TCONS_00055832-protein

>TCONS_00055832-protein ID=TCONS_00055832-protein|Name=TCONS_00055832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
SRKHTLVLPKNNYQDLPGITKKEKLALLENGDIFYISKTNTSPLKLNNRP
SKKKQLHNDTTTDNNKERPKIKLLSKKIEMEEQENQKRKEKIKGKESSGK
K

Run BLAST on NCBI

transcript from alignment at scaffold_261:30374..33004+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055832 ID=TCONS_00055832|Name=TCONS_00055832|organism=Clytia hemisphaerica|type=transcript|length=2631bp|location=Sequence derived from alignment at scaffold_261:30374..33004+ (Clytia hemisphaerica)
GTCCCGTAAACACACTTTGGTGCTACCAAAAAATAATTACCAGGACCTAC
CAGGAATTACCAAGAAGGAAAAACTTGCGTTATTAGaggtatgtttttga
aaatcaaatatgtTTTCTTAGTTGATTTTTTTACATCAGGATtatgttta
aaagtttttcaaaaatttgtgaaaatttaatcccaacaaaaattttcaac
atctttggACTCAAAGTTGCAAAATATAATCCTTCGTTAAATTAAGTtac
tcaaaaaatgattttcaacgaatttttttttgttttgaaaatgtacCCTT
TTGCAATTCAGGTttcgttttgatttttcagaatCATTTTATCATATAAT
TATTACTTAACAACATACATGTAACCCTCTTTTAAAAAGTAACCGANTGC
AATTCAGGTttcgttttgatttttcagaatCATTTTATCATATAATTATT
ACTTAACAACATACATGTAACCCTCTTTTAAAAAGTAACTGGTAaacaat
gcaaattttcaaatttcaagattGATGTaagattaaaattaaaatttttg
tttagaaTGGCGACATTTTCTACATATCAAAGACCAACACTAGTCCGTTG
AAGTTGAATAATAGGTAAACAGTGACAAAATATAAACTAAACCGATTGTT
AAACagcatttttttttgcaaacagtGCAGATGTGAATAAATCTTTCAGA
ATGGTAGCCTGCATAGTGGTGATAATTTTTGTGTTGACCAAAAgagcttt
tttatttcatttattataAATCGGgttacttttttaaatataaattcaac
aatttttttcagaccctcCAAAAAGAAACAACTACACAACGACACTACTA
CAGACAACAACAAAGAGAGACCAAAGATCAAGCTGCTAAGCAAAAAAATA
GAGATGGAAGAGCAAGAGAATCAGAAGCgtaaagaaaagataaaagGCAA
AGAAAGCAGCGGCAAAAAATGAGAATGCTAGGCAGCCTCAAACGAAAAGG
GTCAAATCAAGTAAGTTTGAATGTTATAAAGGAATTAAGTCAAATTATTG
CTTGAATCATTGAGCTATCGAACATATATAGTGTCAAATCATCTAAAGGG
CTACTTGAGCaacaaatgtttaaaattttggattttcaaatcACAACAGA
CCATTTTTCCTATATTTAGAATGTCATATTGAATAACTAAAAACTCCGGA
ATCAAAATaatgataagaaaaaattaatgtaCACTTAAAATAATTAAACA
TTAATGTGTCAATTTTTTATGTTATTCAACATTATATTCTAAATAGCAAT
AGATCTATATTCTTTACGATCTTTTTTAAAGGCGATGGAGAAAAGgctga
taaagaaaaagaaaaagaagaaactagaaaAACAAGTAAGGATAAATTAA
AAAATTAATATTGTAAGATGGCCCCTGGTTTTAATCCTAAAAAACTTCCT
AACTTCTATGAGAATTTTATTCTTGGGCAGGAGAGTTTTCAATTTTTGGT
TGGTTTTGGTTGGTAATCGAACATCTTTTGCACTTGTTTTAACTTTTAGT
AAGATTATTGAGTGAGCCAAAAATAGTTGTTTGGGAGAATGCAAAGAATT
TTTTGAATAGCTAATTACTTCAGCAGAAATTGTTTTGATGATAACGTCAT
AAATGATTAATTCTTTTTCAACACAGCTGGTTACATGGGTATAAGATAAT
TTATCGGTTTGTATGTAATGGCGGGAGTATTTGTTATTCCACGGACTGGT
TGTGTTCTCCAAAACAACTATTTAACTTTACATTTATTTTAGCTGCTGAA
AAGAGACCAAAAGCCAAATATGACCCGAACATATTAATACCCAAGTTTAT
GGAGGCTACCAAAGAACCCGAGAAAGGTTAGTATCACACTGGTCTCAATT
TTAGTCTGTCTGTCTGTCTCTGTTTATTCCTGTCATATGTATGTATCAAA
AGTGTGAAATTAAATATTTTGTAAATATCAAGAAAGAGGGGTCATTTATA
TCACTTATATATAAGTGAACAAGATTGAACAATCTTTTTAAGATCTTCTC
AGATTTTTTGAGATTTTTTGGTTCCTTTTTTGGATTTCAGCCGGGTAATT
TTAATTAAGGATTACAGGAAAGGAAACATCTATCAGCAAGAATAAACAAA
AAAATAAATTTAATTGCAAAGAAAATGTTTTTGAAAAACTTTTCGATTTC
TATCTGGGGACCCTCTTCTATCTATTTATATATAAATACTTCGTACTAAG
AGGTCCtactgatttttaattttttgactgagaaatattattttgaattc
AAGATTTGTCATCTACTCCAAAATTGCCAACCACCCCGCCATCCAAACCA
TCCACGTCCGCCACCCAAACCATCCACGTCCGCCACCATCACTAAACAAA
AACCTGGCTATACCTACACCTATCAGCCACCTGTAAATATATACCAAGAA
TTAGTAGTTCCTGAAGGAGCAACAAGAAAGAGGAAAGCAAAGAAACTCGA
ATCAGATTGATTTACAAACAACCAGCCAAATTAATTTAAAACAGAATTTc
taataaatttaattttgggcctatttgtttcatcgctatttttgctatat
ttacactcatctcaatttttttctatccAAA

Coding sequence (CDS) from alignment at scaffold_261:30374..33004+

>TCONS_00055832 ID=TCONS_00055832|Name=TCONS_00055832|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_261:30374..33004+ (Clytia hemisphaerica)
TCCCGTAAACACACTTTGGTGCTACCAAAAAATAATTACCAGGACCTACC
AGGAATTACCAAGAAGGAAAAACTTGCGTTATTAGagaaTGGCGACATTT
TCTACATATCAAAGACCAACACTAGTCCGTTGAAGTTGAATAATAGaccc
tcCAAAAAGAAACAACTACACAACGACACTACTACAGACAACAACAAAGA
GAGACCAAAGATCAAGCTGCTAAGCAAAAAAATAGAGATGGAAGAGCAAG
AGAATCAGAAGCgtaaagaaaagataaaagGCAAAGAAAGCAGCGGCAAA
AAATGATCCCGTAAACACACTTTGGTGCTACCAAAAAATAATTACCAGGA
CCTACCAGGAATTACCAAGAAGGAAAAACTTGCGTTATTAGagaaTGGCG
ACATTTTCTACATATCAAAGACCAACACTAGTCCGTTGAAGTTGAATAAT
AGaccctcCAAAAAGAAACAACTACACAACGACACTACTACAGACAACAA
CAAAGAGAGACCAAAGATCAAGCTGCTAAGCAAAAAAATAGAGATGGAAG
AGCAAGAGAATCAGAAGCgtaaagaaaagataaaagGCAAAGAAAGCAGC
GGCAAAAAATGATCCCGTAAACACACTTTGGTGCTACCAAAAAATAATTA
CCAGGACCTACCAGGAATTACCAAGAAGGAAAAACTTGCGTTATTAGaga
aTGGCGACATTTTCTACATATCAAAGACCAACACTAGTCCGTTGAAGTTG
AATAATAGaccctcCAAAAAGAAACAACTACACAACGACACTACTACAGA
CAACAACAAAGAGAGACCAAAGATCAAGCTGCTAAGCAAAAAAATAGAGA
TGGAAGAGCAAGAGAATCAGAAGCgtaaagaaaagataaaagGCAAAGAA
AGCAGCGGCAAAAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035152	XLOC_035152	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055832-protein	TCONS_00055832-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_261	supercontig	scaffold_261:30374..33004 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0574691	0	0	0.556322	0.502415	0.378839	0.709329	0.297971	0.246057	0.358243	0.313993	0.0783891	0.20352	0.0334642	0.143649	0	0.0906909	0	0	0.0569799	0	0.0675716	0	0.253096	0.338823	0.080809	0	0	0.199931

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055832 vs. Swiss-Prot (Human)

BLAST of TCONS_00055832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00055832 (transcript) - C. hemisphaerica