TCONS_00055837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055837
Unique NameTCONS_00055837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055837 ID=TCONS_00055837|Name=TCONS_00055837|organism=Clytia hemisphaerica|type=transcript|length=587bp
GGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAG
CCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAA
TGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATC
AAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTAACA
GAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCGGCAA
AAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAAAGCA
TTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTTCCCC
TCGTGCAAATCACATCTCAAACTCGAAGgcaagCAATCAAATCCGTACAT
CTTTTTCTACAAGTACATTTGCGACAACGGAAAtcatatctcgagatcta
gcaacacatataatacgtataaCTATGATGTCAATGTTGAATACATATTC
AAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGAC
AACTTATGACAACCCAAAACATCACACTCGTCAAAGT
Run BLAST on NCBI

protein sequence of TCONS_00055837-protein

>TCONS_00055837-protein ID=TCONS_00055837-protein|Name=TCONS_00055837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
CNVEQIVGTFCGDDNKPHDIYTHSKCATLKLVNGYKYASYFRVLAEFIDQ
ASIPHSDCSWYERVLTEPSGVIISPGWPHGTGKNKVECNWRIKTQNDKSI
TLNIMDDDFQSNDYFPSCKSHLKLEGKQSNPYIFFYKYICDNGNHISRSS
NTYNTYNYDVNVEYIFKKVFNNKNYRGLALGWTTYDNPKHHTRQS
Run BLAST on NCBI

transcript from alignment at scaffold_262:11903..17346+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055837 ID=TCONS_00055837|Name=TCONS_00055837|organism=Clytia hemisphaerica|type=transcript|length=5444bp|location=Sequence derived from alignment at scaffold_262:11903..17346+ (Clytia hemisphaerica)
GGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAG
CCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAA
TGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATC
AAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGTAAGATTTA
GCCTACAATGTCATTTTAAAGTTCATGAAATGTCGTAAAAAGTAATTTTA
TGTGCATTTTATTGGGTGGAAATTACTTCCGCACGATAcaggttcttgaa
aaaatccATAAAGAGCGCTAGAAAGATGAAAAGACTTGATGAAAATGAGT
TCctcaaaaatctttaatttgATAAACTCACACAACAAAAATTGTTGGGT
ATTCTTCCAATGTTCTTAAGGTATTCTTCCGATGTTTTTAAGGTATTCTT
TCGATGTTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTCGATG
TTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTCGATGGTCTTA
AGGTATTCCTTCGATGTTCTTAAGGTATTCTTTCGAtgttcttagggtat
tctttcGGGTAAAAACAGCTCATTGACCTCAATGAGCTATTTTTACCCGA
AAGTAACATCGATTGATATGGCACAATTCTTGTTTATTTACTCTTTAGGG
TGTTAACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGT
ACCGGCAAAAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGA
CAAAAGCATTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATT
ATTTCCCCTCGTGCAAATCACATCTCAAACTCGAAGGTTAGTTTCATCTA
GCGTGATCTTTTTGCGTATTTTTCGTTCAACTCAAGGATTGCCGAGTCCT
GATAAATTTTAATTACTTAAggactctgaccatagtccCGGCGGGGAGGG
GAGGTACTTAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCAAAA
ATAGCACTAGTGGACGGCAGGCTTTAGGATTCTTTTGAGGTTTCATTAAT
TTTAAATTACTGAGGTATTTAATCTGTCATACTTTCTTCCCTCAAAAAGT
TCTTTCTGCAGAATTAAAACCAGATTATAAGAAATCTATGGGGTAGACGG
GGGTAGTtgggacagaaatattttagacgatacgcatcccctatatcaaa
tcatatcagaggggatgcgtgcagcctataCAAGTGCTTGAGAAATTGCG
CAATACAGCACGTCGAATCTTTCTGTCATTACTCTGCGATgcaatataaa
aatattgccGAACAAACTGCAAGCGCTTGCAATTTCTCCTTGCAATTTGA
CGTTTTTCtcataaaacatttttatttgtatAATTTCAGACTCTTTCTAA
GGAGGTTACGCTTCAAGAATCTCCAGACGGAAGCAATGAAACAATTGCAA
TGAAGCCGCATTAAAAAAGCTTaaaggttttgattttaaataagagtgat
accgtttgcttactcatcaattttaatttacaagctttttcgcatttttc
gcacacagatgtggagcagaTTGGCaagaaagaggagaagaaaaacattt
ttttgcttatatcagcataacataacaataggaagacactgccccgatat
gaaatatgtgtctgatttGAAACGGGAtcacttatttaaaaacaaaacct
ttaagagacTGAAAACGCTAATCCGAAAGGTTTTGATtaccttaattttt
ttttcaggcaagCAATCAAATCCGTACATCTTTTTCTACAAGTACATTTG
CGACAACGGAAAtcatatctcgagatctagcaacacatataatacgtata
aCTATGATGTCAACGTTGAATACGTATTCAAGAAANTATCTTGAGATCTA
GCAAcacatataatacgtataaCTATGATGTCAATGTTGAATACATATTC
AAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGAC
AACTTATGACAACCCAAAACATCACACTCGTCAAAGTAAGATATTTTATT
GTTACAGTGAAGTCCCTGGGAgggtagactagcaagcgtctgtctttctt
TGGACACATGAaagcgggaatagtgcttataatagaGAGTTCTCGTCAAA
GTAAGTATCTTAActaataatacaccttttcgatcgtagccgctaattgc
cacgcgggcattttttgtctgttttaccaccctaaaaccatctttttttc
gcacctaaagacaaaagtgtaaaaaaatgattgggtcgagtttagggtgg
taaattaaataataaagtggcacgcgcctgaccgtgcGACTACATTCGAA
AAGGTGTAATAAACGGGATAAATAACTTTAAACCgttgaatccaaaagtt
ccattaagaatcaaatcgatctgattggttaaaacttaaaaacgatGTCA
TTGACCTAAATGAAATAGTTACTAATCAGAAAAAGCGTTTGATTGTTGAA
GGTAAACCTTTTCATGAATTATGTCAAGAGGAAAACGCTTAcctcctttt
caaaatattacctactacagggtgtcccgaaaaaaattccTGTCTCTGAG
CACGAGGTCAAGTAGAAATTTGTTTTGTGTGTATGTCTAGTTTATCTCTT
TAACGCAACGCAGTAATTAACACTTTAATGGTTACAGTGAAGCAGTAGCA
CAATAAACTTAAGATTAAAATATCAATTGTGTTgttaaataaatcatttt
tatGAACTTTTTATGAACTTCAAACaaagtaaaaacattttaatgatcGC
ATTATATTTAACCACANcctatatcaaatcatatcagaggggatgcgtgc
agcctataCAAGTGCTTGAGAAATTGCGCAATACAGCACGTCGAATCTTT
CTGTCATTACTCTGCGATgcaatataaaaatattgccGAACAAACTGCAA
GCGCTTGCAATTTCTCCTTGCAATTTGACGTTTTTCtcataaaacatttt
tatttgtatAATTTCAGACTCTTTCTAAGGAGGTTACGCTTCAAGAATCT
CCAGACGGAAGCAATGAAACAATTGCAATGAAGCCGCATTAAAAAAGCTT
AAAGGTTTCgattttaaataagagtgataccgtttgcttactcatcaatt
ttaattcacaagctttttcgcatttttcgcacacagatgtggagcagaTT
GGCaagaaagaggagaagaaaaacatttttttgcttatatcagcataaca
taacaataggaagacactgccCCGATATGAAATATTTGTCTGATTTGAAA
CGGGAtcacttatttaaaaacaaaacctttaagagacTGAAAACGCTAAT
CCGAAAGGTTTTGATTACCTTAATTTGTTTTTCAGGCAAGCAATCAAATC
CGTACATCTTTTTCTACAAGTACATTTGCGACAACGGAAATCATATCTTG
AGATCTAGCAAcacatataatacgtataaCTATGATGTCAATGTTGAATA
CATATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGG
GATGGACAACTTATGACAACCCAAAACATCACACTCGTCAAAGT

Coding sequence (CDS) from alignment at scaffold_262:11903..17346+

>TCONS_00055837 ID=TCONS_00055837|Name=TCONS_00055837|organism=Clytia hemisphaerica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_262:11903..17346+ (Clytia hemisphaerica)
TGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAGCC
ACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAATG
GATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATCAA
GCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTAACAGA
GCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCGGCAAAA
ACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAAAGCATT
ACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTTCCCCTC
GTGCAAATCACATCTCAAACTCGAAGgcaagCAATCAAATCCGTACATCT
TTTTCTACAAGTACATTTGCGACAACGGAAAtcatatctcgagatctagc
aacacatataatacgtataaCTATGATGTCAATGTTGAATACATATTCAA
GAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGACAA
CTTATGACAACCCAAAACATCACACTCGTCAAAGTTGTAATGTTGAACAA
ATTGTTGGTACTTTTTGTGGAGATGATAACAAGCCACATGATATTTACAC
TCATTCTAAATGTGCTACCTTAAAATTGGTCAATGGATATAAATATGCGA
GTTATTTTCGAGTCTTGGCTGAATTCATAGATCAAGCGTCTATCCCGCAC
TCTGATTGCTCCTGGTATGAGAGGGTGTTAACAGAGCCAAGCGGTGTGAT
TATTTCACCAGGGTGGCCACACGGTACCGGCAAAAACAAAGTGGAATGTA
ATTGGAGAATTAAAACACAAAATGACAAAAGCATTACTCTAAACATAATG
GATGACGATTTTCAATCGAATGATTATTTCCCCTCGTGCAAATCACATCT
CAAACTCGAAGgcaagCAATCAAATCCGTACATCTTTTTCTACAAGTACA
TTTGCGACAACGGAAAtcatatctcgagatctagcaacacatataatacg
tataaCTATGATGTCAATGTTGAATACATATTCAAGAAGGTCTTTAACAA
CAAAAACTACAGAGGTTTAGCACTGGGATGGACAACTTATGACAACCCAA
AACATCACACTCGTCAAAGTTGTAATGTTGAACAAATTGTTGGTACTTTT
TGTGGAGATGATAACAAGCCACATGATATTTACACTCATTCTAAATGTGC
TACCTTAAAATTGGTCAATGGATATAAATATGCGAGTTATTTTCGAGTCT
TGGCTGAATTCATAGATCAAGCGTCTATCCCGCACTCTGATTGCTCCTGG
TATGAGAGGGTGTTAACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTG
GCCACACGGTACCGGCAAAAACAAAGTGGAATGTAATTGGAGAATTAAAA
CACAAAATGACAAAAGCATTACTCTAAACATAATGGATGACGATTTTCAA
TCGAATGATTATTTCCCCTCGTGCAAATCACATCTCAAACTCGAAGgcaa
gCAATCAAATCCGTACATCTTTTTCTACAAGTACATTTGCGACAACGGAA
AtcatatctcgagatctagcaacacatataatacgtataaCTATGATGTC
AATGTTGAATACATATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGG
TTTAGCACTGGGATGGACAACTTATGACAACCCAAAACATCACACTCGTC
AAAGTTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAAC
AAGCCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGT
CAATGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAG
ATCAAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTA
ACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCGG
CAAAAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAAA
GCATTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTTC
CCCTCGTGCAAATCACATCTCAAACTCGAAGgcaagCAATCAAATCCGTA
CATCTTTTTCTACAAGTACATTTGCGACAACGGAAAtcatatctcgagat
ctagcaacacatataatacgtataaCTATGATGTCAATGTTGAATACATA
TTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATG
GACAACTTATGACAACCCAAAACATCACACTCGTCAAAGTTGTAATGTTG
AACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAGCCACATGATATT
TACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAATGGATATAAATA
TGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATCAAGCGTCTATCC
CGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTAACAGAGCCAAGCGGT
GTGATTATTTCACCAGGGTGGCCACACGGTACCGGCAAAAACAAAGTGGA
ATGTAATTGGAGAATTAAAACACAAAATGACAAAAGCATTACTCTAAACA
TAATGGATGACGATTTTCAATCGAATGATTATTTCCCCTCGTGCAAATCA
CATCTCAAACTCGAAGgcaagCAATCAAATCCGTACATCTTTTTCTACAA
GTACATTTGCGACAACGGAAAtcatatctcgagatctagcaacacatata
atacgtataaCTATGATGTCAATGTTGAATACATATTCAAGAAGGTCTTT
AACAACAAAAACTACAGAGGTTTAGCACTGGGATGGACAACTTATGACAA
CCCAAAACATCACACTCGTCAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035155XLOC_035155Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055837-proteinTCONS_00055837-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055837-exon-scaffold_262-1491911889:11903..12092TCONS_00055837-exon-scaffold_262-1491911889:11903..12092Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1510915933:11903..12092TCONS_00055837-exon-scaffold_262-1510915933:11903..12092Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1575043694:11903..12092TCONS_00055837-exon-scaffold_262-1575043694:11903..12092Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1491911889:12601..12788TCONS_00055837-exon-scaffold_262-1491911889:12601..12788Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1510915933:12601..12788TCONS_00055837-exon-scaffold_262-1510915933:12601..12788Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1575043694:12601..12788TCONS_00055837-exon-scaffold_262-1575043694:12601..12788Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1491911889:15510..15588TCONS_00055837-exon-scaffold_262-1491911889:15510..15588Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1510915933:15510..15588TCONS_00055837-exon-scaffold_262-1510915933:15510..15588Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1575043694:15510..15588TCONS_00055837-exon-scaffold_262-1575043694:15510..15588Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1491911889:15660..15696TCONS_00055837-exon-scaffold_262-1491911889:15660..15696Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1510915933:15660..15696TCONS_00055837-exon-scaffold_262-1510915933:15660..15696Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1575043694:15660..15696TCONS_00055837-exon-scaffold_262-1575043694:15660..15696Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1491911889:17254..17346TCONS_00055837-exon-scaffold_262-1491911889:17254..17346Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1510915933:17254..17346TCONS_00055837-exon-scaffold_262-1510915933:17254..17346Clytia hemisphaericaexon
TCONS_00055837-exon-scaffold_262-1575043694:17254..17346TCONS_00055837-exon-scaffold_262-1575043694:17254..17346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_262supercontigscaffold_262:11903..17346 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.759424	0	1.68934	2.31583	3.1744	1.88117	7.1291	3.5942	1.21721	0.422093	0.479653	0.389537	0.214013	0.649952	2.54417	2.6147	1.45193	1.18942	2.16504	4.4677	4.94615	4.40679	0.913265	1.85986	0.0520867	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000859CUB_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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