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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055837 ID=TCONS_00055837|Name=TCONS_00055837|organism=Clytia hemisphaerica|type=transcript|length=587bp
GGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAG
CCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAA
TGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATC
AAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTAACA
GAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCGGCAA
AAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAAAGCA
TTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTTCCCC
TCGTGCAAATCACATCTCAAACTCGAAGgcaagCAATCAAATCCGTACAT
CTTTTTCTACAAGTACATTTGCGACAACGGAAAtcatatctcgagatcta
gcaacacatataatacgtataaCTATGATGTCAATGTTGAATACATATTC
AAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGAC
AACTTATGACAACCCAAAACATCACACTCGTCAAAGT Run BLAST on NCBI protein sequence of TCONS_00055837-protein >TCONS_00055837-protein ID=TCONS_00055837-protein|Name=TCONS_00055837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
CNVEQIVGTFCGDDNKPHDIYTHSKCATLKLVNGYKYASYFRVLAEFIDQ
ASIPHSDCSWYERVLTEPSGVIISPGWPHGTGKNKVECNWRIKTQNDKSI
TLNIMDDDFQSNDYFPSCKSHLKLEGKQSNPYIFFYKYICDNGNHISRSS
NTYNTYNYDVNVEYIFKKVFNNKNYRGLALGWTTYDNPKHHTRQS Run BLAST on NCBI transcript from alignment at scaffold_262:11903..17346+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055837 ID=TCONS_00055837|Name=TCONS_00055837|organism=Clytia hemisphaerica|type=transcript|length=5444bp|location=Sequence derived from alignment at scaffold_262:11903..17346+ (Clytia hemisphaerica)
GGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAG
CCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAA
TGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATC
AAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGTAAGATTTA
GCCTACAATGTCATTTTAAAGTTCATGAAATGTCGTAAAAAGTAATTTTA
TGTGCATTTTATTGGGTGGAAATTACTTCCGCACGATAcaggttcttgaa
aaaatccATAAAGAGCGCTAGAAAGATGAAAAGACTTGATGAAAATGAGT
TCctcaaaaatctttaatttgATAAACTCACACAACAAAAATTGTTGGGT
ATTCTTCCAATGTTCTTAAGGTATTCTTCCGATGTTTTTAAGGTATTCTT
TCGATGTTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTCGATG
TTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTCGATGGTCTTA
AGGTATTCCTTCGATGTTCTTAAGGTATTCTTTCGAtgttcttagggtat
tctttcGGGTAAAAACAGCTCATTGACCTCAATGAGCTATTTTTACCCGA
AAGTAACATCGATTGATATGGCACAATTCTTGTTTATTTACTCTTTAGGG
TGTTAACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGT
ACCGGCAAAAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGA
CAAAAGCATTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATT
ATTTCCCCTCGTGCAAATCACATCTCAAACTCGAAGGTTAGTTTCATCTA
GCGTGATCTTTTTGCGTATTTTTCGTTCAACTCAAGGATTGCCGAGTCCT
GATAAATTTTAATTACTTAAggactctgaccatagtccCGGCGGGGAGGG
GAGGTACTTAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCAAAA
ATAGCACTAGTGGACGGCAGGCTTTAGGATTCTTTTGAGGTTTCATTAAT
TTTAAATTACTGAGGTATTTAATCTGTCATACTTTCTTCCCTCAAAAAGT
TCTTTCTGCAGAATTAAAACCAGATTATAAGAAATCTATGGGGTAGACGG
GGGTAGTtgggacagaaatattttagacgatacgcatcccctatatcaaa
tcatatcagaggggatgcgtgcagcctataCAAGTGCTTGAGAAATTGCG
CAATACAGCACGTCGAATCTTTCTGTCATTACTCTGCGATgcaatataaa
aatattgccGAACAAACTGCAAGCGCTTGCAATTTCTCCTTGCAATTTGA
CGTTTTTCtcataaaacatttttatttgtatAATTTCAGACTCTTTCTAA
GGAGGTTACGCTTCAAGAATCTCCAGACGGAAGCAATGAAACAATTGCAA
TGAAGCCGCATTAAAAAAGCTTaaaggttttgattttaaataagagtgat
accgtttgcttactcatcaattttaatttacaagctttttcgcatttttc
gcacacagatgtggagcagaTTGGCaagaaagaggagaagaaaaacattt
ttttgcttatatcagcataacataacaataggaagacactgccccgatat
gaaatatgtgtctgatttGAAACGGGAtcacttatttaaaaacaaaacct
ttaagagacTGAAAACGCTAATCCGAAAGGTTTTGATtaccttaattttt
ttttcaggcaagCAATCAAATCCGTACATCTTTTTCTACAAGTACATTTG
CGACAACGGAAAtcatatctcgagatctagcaacacatataatacgtata
aCTATGATGTCAACGTTGAATACGTATTCAAGAAANTATCTTGAGATCTA
GCAAcacatataatacgtataaCTATGATGTCAATGTTGAATACATATTC
AAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGAC
AACTTATGACAACCCAAAACATCACACTCGTCAAAGTAAGATATTTTATT
GTTACAGTGAAGTCCCTGGGAgggtagactagcaagcgtctgtctttctt
TGGACACATGAaagcgggaatagtgcttataatagaGAGTTCTCGTCAAA
GTAAGTATCTTAActaataatacaccttttcgatcgtagccgctaattgc
cacgcgggcattttttgtctgttttaccaccctaaaaccatctttttttc
gcacctaaagacaaaagtgtaaaaaaatgattgggtcgagtttagggtgg
taaattaaataataaagtggcacgcgcctgaccgtgcGACTACATTCGAA
AAGGTGTAATAAACGGGATAAATAACTTTAAACCgttgaatccaaaagtt
ccattaagaatcaaatcgatctgattggttaaaacttaaaaacgatGTCA
TTGACCTAAATGAAATAGTTACTAATCAGAAAAAGCGTTTGATTGTTGAA
GGTAAACCTTTTCATGAATTATGTCAAGAGGAAAACGCTTAcctcctttt
caaaatattacctactacagggtgtcccgaaaaaaattccTGTCTCTGAG
CACGAGGTCAAGTAGAAATTTGTTTTGTGTGTATGTCTAGTTTATCTCTT
TAACGCAACGCAGTAATTAACACTTTAATGGTTACAGTGAAGCAGTAGCA
CAATAAACTTAAGATTAAAATATCAATTGTGTTgttaaataaatcatttt
tatGAACTTTTTATGAACTTCAAACaaagtaaaaacattttaatgatcGC
ATTATATTTAACCACANcctatatcaaatcatatcagaggggatgcgtgc
agcctataCAAGTGCTTGAGAAATTGCGCAATACAGCACGTCGAATCTTT
CTGTCATTACTCTGCGATgcaatataaaaatattgccGAACAAACTGCAA
GCGCTTGCAATTTCTCCTTGCAATTTGACGTTTTTCtcataaaacatttt
tatttgtatAATTTCAGACTCTTTCTAAGGAGGTTACGCTTCAAGAATCT
CCAGACGGAAGCAATGAAACAATTGCAATGAAGCCGCATTAAAAAAGCTT
AAAGGTTTCgattttaaataagagtgataccgtttgcttactcatcaatt
ttaattcacaagctttttcgcatttttcgcacacagatgtggagcagaTT
GGCaagaaagaggagaagaaaaacatttttttgcttatatcagcataaca
taacaataggaagacactgccCCGATATGAAATATTTGTCTGATTTGAAA
CGGGAtcacttatttaaaaacaaaacctttaagagacTGAAAACGCTAAT
CCGAAAGGTTTTGATTACCTTAATTTGTTTTTCAGGCAAGCAATCAAATC
CGTACATCTTTTTCTACAAGTACATTTGCGACAACGGAAATCATATCTTG
AGATCTAGCAAcacatataatacgtataaCTATGATGTCAATGTTGAATA
CATATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGG
GATGGACAACTTATGACAACCCAAAACATCACACTCGTCAAAGT Coding sequence (CDS) from alignment at scaffold_262:11903..17346+ >TCONS_00055837 ID=TCONS_00055837|Name=TCONS_00055837|organism=Clytia hemisphaerica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_262:11903..17346+ (Clytia hemisphaerica)
TGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAGCC
ACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAATG
GATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATCAA
GCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTAACAGA
GCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCGGCAAAA
ACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAAAGCATT
ACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTTCCCCTC
GTGCAAATCACATCTCAAACTCGAAGgcaagCAATCAAATCCGTACATCT
TTTTCTACAAGTACATTTGCGACAACGGAAAtcatatctcgagatctagc
aacacatataatacgtataaCTATGATGTCAATGTTGAATACATATTCAA
GAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGACAA
CTTATGACAACCCAAAACATCACACTCGTCAAAGTTGTAATGTTGAACAA
ATTGTTGGTACTTTTTGTGGAGATGATAACAAGCCACATGATATTTACAC
TCATTCTAAATGTGCTACCTTAAAATTGGTCAATGGATATAAATATGCGA
GTTATTTTCGAGTCTTGGCTGAATTCATAGATCAAGCGTCTATCCCGCAC
TCTGATTGCTCCTGGTATGAGAGGGTGTTAACAGAGCCAAGCGGTGTGAT
TATTTCACCAGGGTGGCCACACGGTACCGGCAAAAACAAAGTGGAATGTA
ATTGGAGAATTAAAACACAAAATGACAAAAGCATTACTCTAAACATAATG
GATGACGATTTTCAATCGAATGATTATTTCCCCTCGTGCAAATCACATCT
CAAACTCGAAGgcaagCAATCAAATCCGTACATCTTTTTCTACAAGTACA
TTTGCGACAACGGAAAtcatatctcgagatctagcaacacatataatacg
tataaCTATGATGTCAATGTTGAATACATATTCAAGAAGGTCTTTAACAA
CAAAAACTACAGAGGTTTAGCACTGGGATGGACAACTTATGACAACCCAA
AACATCACACTCGTCAAAGTTGTAATGTTGAACAAATTGTTGGTACTTTT
TGTGGAGATGATAACAAGCCACATGATATTTACACTCATTCTAAATGTGC
TACCTTAAAATTGGTCAATGGATATAAATATGCGAGTTATTTTCGAGTCT
TGGCTGAATTCATAGATCAAGCGTCTATCCCGCACTCTGATTGCTCCTGG
TATGAGAGGGTGTTAACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTG
GCCACACGGTACCGGCAAAAACAAAGTGGAATGTAATTGGAGAATTAAAA
CACAAAATGACAAAAGCATTACTCTAAACATAATGGATGACGATTTTCAA
TCGAATGATTATTTCCCCTCGTGCAAATCACATCTCAAACTCGAAGgcaa
gCAATCAAATCCGTACATCTTTTTCTACAAGTACATTTGCGACAACGGAA
AtcatatctcgagatctagcaacacatataatacgtataaCTATGATGTC
AATGTTGAATACATATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGG
TTTAGCACTGGGATGGACAACTTATGACAACCCAAAACATCACACTCGTC
AAAGTTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAAC
AAGCCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGT
CAATGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAG
ATCAAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTA
ACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCGG
CAAAAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAAA
GCATTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTTC
CCCTCGTGCAAATCACATCTCAAACTCGAAGgcaagCAATCAAATCCGTA
CATCTTTTTCTACAAGTACATTTGCGACAACGGAAAtcatatctcgagat
ctagcaacacatataatacgtataaCTATGATGTCAATGTTGAATACATA
TTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATG
GACAACTTATGACAACCCAAAACATCACACTCGTCAAAGTTGTAATGTTG
AACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAGCCACATGATATT
TACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAATGGATATAAATA
TGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATCAAGCGTCTATCC
CGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTAACAGAGCCAAGCGGT
GTGATTATTTCACCAGGGTGGCCACACGGTACCGGCAAAAACAAAGTGGA
ATGTAATTGGAGAATTAAAACACAAAATGACAAAAGCATTACTCTAAACA
TAATGGATGACGATTTTCAATCGAATGATTATTTCCCCTCGTGCAAATCA
CATCTCAAACTCGAAGgcaagCAATCAAATCCGTACATCTTTTTCTACAA
GTACATTTGCGACAACGGAAAtcatatctcgagatctagcaacacatata
atacgtataaCTATGATGTCAATGTTGAATACATATTCAAGAAGGTCTTT
AACAACAAAAACTACAGAGGTTTAGCACTGGGATGGACAACTTATGACAA
CCCAAAACATCACACTCGTCAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055837-exon-scaffold_262-1491911889:11903..12092 | TCONS_00055837-exon-scaffold_262-1491911889:11903..12092 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1510915933:11903..12092 | TCONS_00055837-exon-scaffold_262-1510915933:11903..12092 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1575043694:11903..12092 | TCONS_00055837-exon-scaffold_262-1575043694:11903..12092 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1491911889:12601..12788 | TCONS_00055837-exon-scaffold_262-1491911889:12601..12788 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1510915933:12601..12788 | TCONS_00055837-exon-scaffold_262-1510915933:12601..12788 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1575043694:12601..12788 | TCONS_00055837-exon-scaffold_262-1575043694:12601..12788 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1491911889:15510..15588 | TCONS_00055837-exon-scaffold_262-1491911889:15510..15588 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1510915933:15510..15588 | TCONS_00055837-exon-scaffold_262-1510915933:15510..15588 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1575043694:15510..15588 | TCONS_00055837-exon-scaffold_262-1575043694:15510..15588 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1491911889:15660..15696 | TCONS_00055837-exon-scaffold_262-1491911889:15660..15696 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1510915933:15660..15696 | TCONS_00055837-exon-scaffold_262-1510915933:15660..15696 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1575043694:15660..15696 | TCONS_00055837-exon-scaffold_262-1575043694:15660..15696 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1491911889:17254..17346 | TCONS_00055837-exon-scaffold_262-1491911889:17254..17346 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1510915933:17254..17346 | TCONS_00055837-exon-scaffold_262-1510915933:17254..17346 | Clytia hemisphaerica | exon |
| TCONS_00055837-exon-scaffold_262-1575043694:17254..17346 | TCONS_00055837-exon-scaffold_262-1575043694:17254..17346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_262 | supercontig | scaffold_262:11903..17346 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
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