TCONS_00055838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055838
Unique NameTCONS_00055838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055838 ID=TCONS_00055838|Name=TCONS_00055838|organism=Clytia hemisphaerica|type=transcript|length=385bp
aactttgacaaaaaaaacCATCATGAAATGGGATGATAAGCACGATGTTT
TGTTGGGGCGTGAGCTCTTATTCATGAAGCCATATAATTTCAAACCTGGT
ACCAGAGATAGCGGTTCAGCGTGGACAGCAGTTGCAGAAGACTTGAACAA
GGTCACTGAGGTCAAGTTCGATGTGACACAGAAGTCAGTTCGAGACAGAA
CGAAGATCGCAATAAACGACCACAAACGAAAAATGCGTCAACAAATAGCT
TAATCCGGGTCAGTGGAAAATCCAACGGAAATGGACCAGGTATGGGAGGA
GATAAGCTCAGAAATGCAAGAAGCATCAGAGAAACATGAAGCCACATCCT
CCAACAAGAAGAAAGAGGAAGATAAATATAAGGCA
Run BLAST on NCBI

transcript from alignment at scaffold_262:21660..22340+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055838 ID=TCONS_00055838|Name=TCONS_00055838|organism=Clytia hemisphaerica|type=transcript|length=681bp|location=Sequence derived from alignment at scaffold_262:21660..22340+ (Clytia hemisphaerica)
aactttgacaaaaaaaacgtaAGTTTTAAGCTGAATCCATTGGagtttga
taattttcatttagaaaatataattgCTTGAAAAACTAACcaattatttt
atatttttgggcataaattttccaaatttcaaaccaaaacaaacataaAT
GCCTTTTGCCTTGATTGCTCTTGGATTTGGAAACAAATTGGTTATCACTT
CTTCGATTTAAATGTGCAACTTTCTGGTTATTTATATACAATCTGAAGAA
GGTAAAATGACACAAATTATTGTATATGTAAGCATTAATCAGGCATTTGT
TTTCACATTTTTAGCATCATGAAATGGGATGATAAGCACGATGTTTTGTT
GGGGCGTGAGCTCTTATTCATGAAGCCATATAATTTCAAACCTGGTACCA
GAGATAGCGGTTCAGCGTGGACAGCAGTTGCAGAAGACTTGAACAAGGTC
ACTGAGGTCAAGTTCGATGTGACACAGAAGTCAGTTCGAGACAGAACGAA
GATCGCAATAAACGACCACAAACGAAAAATGCGTCAACAAATAGCTTAAT
CCGGGTCAGTGGAAAATCCAACGGAAATGGACCAGGTATGGGAGGAGATA
AGCTCAGAAATGCAAGAAGCATCAGAGAAACATGAAGCCACATCCTCCAA
CAAGAAGAAAGAGGAAGATAAATATAAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035156XLOC_035156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055838-exon-scaffold_262-1491911889:21660..21677TCONS_00055838-exon-scaffold_262-1491911889:21660..21677Clytia hemisphaericaexon
TCONS_00055838-exon-scaffold_262-1510915933:21660..21677TCONS_00055838-exon-scaffold_262-1510915933:21660..21677Clytia hemisphaericaexon
TCONS_00055838-exon-scaffold_262-1575043694:21660..21677TCONS_00055838-exon-scaffold_262-1575043694:21660..21677Clytia hemisphaericaexon
TCONS_00055838-exon-scaffold_262-1491911889:21974..22340TCONS_00055838-exon-scaffold_262-1491911889:21974..22340Clytia hemisphaericaexon
TCONS_00055838-exon-scaffold_262-1510915933:21974..22340TCONS_00055838-exon-scaffold_262-1510915933:21974..22340Clytia hemisphaericaexon
TCONS_00055838-exon-scaffold_262-1575043694:21974..22340TCONS_00055838-exon-scaffold_262-1575043694:21974..22340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_262supercontigscaffold_262:21660..22340 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00764	0.992074	0.288044	0	8.88644	4.94065	3.10993	2.01296	1.20285	0.882928	0.248034	1.15324	0.893279	2.3564	0.475702	0.796052	2.2389	1.07437	1.02984	1.09161	1.39256	1.49327	0.462251	0.99588	3.85459	2.37079	0.360825	0	0.305383	0.577502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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