TCONS_00055861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055861
Unique NameTCONS_00055861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055861 ID=TCONS_00055861|Name=TCONS_00055861|organism=Clytia hemisphaerica|type=transcript|length=491bp
CGAAAGACAAAGTATAGAAGTTAATACTATTTTGCAACGAGTTCAAAACA
TGTGTTCGCTGGATGATAACGCAAATCTTGACGACAGTGAGGGTATCCAA
ATGGAAGTTGTGAGATCAGTGGATGAAGAAGCACCCGTCACATTGGAAGA
ATCGATTGTTTACGATAGAACCACGACAACTCGAAATTCATCAAGAAAAA
CGGAGGTTGAAGTAAAAGCTCAATCGAAAAACAAGCCAAAGAATGTAAAA
TTTTCCATCGAAGAAGACGAACAGTTATTAAAGGGTATTTTAAGACATGG
TGAAAAAAGTTGGACAGCAATCTTAAAGGACACACGATACCAATTCCATC
CAACGCGAAACCGAGATTCTCTTAGAGTGCGTGCAGACACGGCAGCTTTC
AAAAAACTAAAGAAGAACCAACCCAAATAAACAGAAAACTGGAATTAATA
TTTTCTTAACTTAACATTTATGATAAAATTGTATATATtac
Run BLAST on NCBI

protein sequence of TCONS_00055861-protein

>TCONS_00055861-protein ID=TCONS_00055861-protein|Name=TCONS_00055861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
ERQSIEVNTILQRVQNMCSLDDNANLDDSEGIQMEVVRSVDEEAPVTLEE
SIVYDRTTTTRNSSRKTEVEVKAQSKNKPKNVKFSIEEDEQLLKGILRHG
EKSWTAILKDTRYQFHPTRNRDSLRVRADTAAFKKLKKNQPK
Run BLAST on NCBI

transcript from alignment at scaffold_263:163098..163588

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055861 ID=TCONS_00055861|Name=TCONS_00055861|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at scaffold_263:163098..163588 (Clytia hemisphaerica)
gtaATATATACAATTTTATCATAAATGTTAAGTTAAGAAAATATTAATTC
CAGTTTTCTGTTTATTTGGGTTGGTTCTTCTTTAGTTTTTTGAAAGCTGC
CGTGTCTGCACGCACTCTAAGAGAATCTCGGTTTCGCGTTGGATGGAATT
GGTATCGTGTGTCCTTTAAGATTGCTGTCCAACTTTTTTCACCATGTCTT
AAAATACCCTTTAATAACTGTTCGTCTTCTTCGATGGAAAATTTTACATT
CTTTGGCTTGTTTTTCGATTGAGCTTTTACTTCAACCTCCGTTTTTCTTG
ATGAATTTCGAGTTGTCGTGGTTCTATCGTAAACAATCGATTCTTCCAAT
GTGACGGGTGCTTCTTCATCCACTGATCTCACAACTTCCATTTGGATACC
CTCACTGTCGTCAAGATTTGCGTTATCATCCAGCGAACACATGTTTTGAA
CTCGTTGCAAAATAGTATTAACTTCTATACTTTGTCTTTCG

Coding sequence (CDS) from alignment at scaffold_263:163098..163588

>TCONS_00055861 ID=TCONS_00055861|Name=TCONS_00055861|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_263:163098..163588 (Clytia hemisphaerica)
TTATTTGGGTTGGTTCTTCTTTAGTTTTTTGAAAGCTGCCGTGTCTGCAC
GCACTCTAAGAGAATCTCGGTTTCGCGTTGGATGGAATTGGTATCGTGTG
TCCTTTAAGATTGCTGTCCAACTTTTTTCACCATGTCTTAAAATACCCTT
TAATAACTGTTCGTCTTCTTCGATGGAAAATTTTACATTCTTTGGCTTGT
TTTTCGATTGAGCTTTTACTTCAACCTCCGTTTTTCTTGATGAATTTCGA
GTTGTCGTGGTTCTATCGTAAACAATCGATTCTTCCAATGTGACGGGTGC
TTCTTCATCCACTGATCTCACAACTTCCATTTGGATACCCTCACTGTCGT
CAAGATTTGCGTTATCATCCAGCGAACACATGTTTTGAACTCGTTGCAAA
ATAGTATTAACTTCTATACTTTGTCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035175XLOC_035175Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055861-proteinTCONS_00055861-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055861-exon-scaffold_263-1491911889:163098..163588TCONS_00055861-exon-scaffold_263-1491911889:163098..163588Clytia hemisphaericaexon
TCONS_00055861-exon-scaffold_263-1510915933:163098..163588TCONS_00055861-exon-scaffold_263-1510915933:163098..163588Clytia hemisphaericaexon
TCONS_00055861-exon-scaffold_263-1575043694:163098..163588TCONS_00055861-exon-scaffold_263-1575043694:163098..163588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:163098..163588 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.251615	0.400657	0.284892	0	0.41279	0	0.161746	0.672421	0.106016	0.131317	0.50984	0.343199	0.396564	0.54756	0	0	0	0	0	0.139945	0	0	0.144249	0	0.286531	0.911316	0	0	0	0.142268
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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