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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055863 ID=TCONS_00055863|Name=TCONS_00055863|organism=Clytia hemisphaerica|type=transcript|length=1022bp
CTCAGGTTCAGTTTCTGGATCAGGGAGCTGTGGACAAATCAAGCGGTCAA
TATCATCTGCATTTCTCAACTTAAATTCAGCtgcaaaatgaatcaaaata
tGTGCATGGGGAAAACCACGCTTTTGGAACTCAATCACATCAACACGGGC
AACAACCATTCCAAGAATACCATCCTGCATTATTTCCTTTTTCATGGCAA
ATAACTTCATGCGAAACACACGAGTAAGTAAATCAGGCCTGTCGTGCGCT
TTCTGATTGGGAAGTAAGTTCTCAGTTACCTCACGCCATCTAGGATTACA
CGTGAAAGCCAAGAAGGCATCTGGCTTTCCATGCTTAGAAACTACAGCCA
TAGCATACAAGTAAAGCTGGTGCATGGCTCTGGGAGACCCTGAAAAGGTT
GAAGGCAAAACAATAACATGACCCGCATTCAAGTTTCTTTGTTCTGCAGC
ATTTTCAAGATGGTCAACTAAACCTTGATAACATTCGGCCCTTAATTGTT
GCTGATTGTGACGAAGAAAATCCAACCTTTAACCTTCAACTTTTGTGTAA
GNGATAACATTCGGCCCTTAATTGTTGCTGATTGTGACGAAGAAAGTCCA
ACCTTGAACCTTCAACTTTTGTGTAAGCATCCACCAAAAATTGCTGAAAT
AGCCTGGCAAATGGAGTGCAGAGAACCCCCTTCGGATAGCTAACCGATAA
ACATAATGCTCAAGTTTTGTCACATGATTCCTGGTCCTTGTTGCCCTCTC
AGCTACGTGAGGCATATTCATATCCCAGCCCAGATCACCTCTTGGAAAAA
GTAATGGTTAGATATATGGATCAACTACGCTAGATGTTGATGGTATACTT
TGCAAATGATGGTTTCGTGGATAGACAACAATATTCCTACCAGCTGGTGG
AGCACCATCTTCTCATCCTGTGAAGATGGCAGCCACCTCTTCATGCAAAG
GCGCATTGCCACGCCTTTGATCGTGCCCCTCTCTCATTACCATGGTTATC
CTAGAAACTGGACGGTTTTCAG Run BLAST on NCBI protein sequence of TCONS_00055863-protein >TCONS_00055863-protein ID=TCONS_00055863-protein|Name=TCONS_00055863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MHQLYLYAMAVVSKHGKPDAFLAFTCNPRWREVTENLLPNQKAHDRPDLL
TRVFRMKLFAMKKEIMQDGILGMVVARVDVIEFQKRGFPHAHILIHFAAE
FKLRNADDIDRLICPQLPDPETEPE Run BLAST on NCBI transcript from alignment at scaffold_263:186733..187754 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055863 ID=TCONS_00055863|Name=TCONS_00055863|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at scaffold_263:186733..187754 (Clytia hemisphaerica)
CTGAAAACCGTCCAGTTTCTAGGATAACCATGGTAATGAGAGAGGGGCAC
GATCAAAGGCGTGGCAATGCGCCTTTGCATGAAGAGGTGGCTGCCATCTT
CACAGGATGAGAAGATGGTGCTCCACCAGCTGGTAGGAATATTGTTGTCT
ATCCACGAAACCATCATTTGCAAAGTATACCATCAACATCTAGCGTAGTT
GATCCATATATCTAACCATTACTTTTTCCAAGAGGTGATCTGGGCTGGGA
TATGAATATGCCTCACGTAGCTGAGAGGGCAACAAGGACCAGGAATCATG
TGACAAAACTTGAGCATTATGTTTATCGGTTAGCTATCCGAAGGGGGTTC
TCTGCACTCCATTTGCCAGGCTATTTCAGCAATTTTTGGTGGATGCTTAC
ACAAAAGTTGAAGGTTCAAGGTTGGACTTTCTTCGTCACAATCAGCAACA
ATTAAGGGCCGAATGTTATCNCTTACACAAAAGTTGAAGGTTAAAGGTTG
GATTTTCTTCGTCACAATCAGCAACAATTAAGGGCCGAATGTTATCAAGG
TTTAGTTGACCATCTTGAAAATGCTGCAGAACAAAGAAACTTGAATGCGG
GTCATGTTATTGTTTTGCCTTCAACCTTTTCAGGGTCTCCCAGAGCCATG
CACCAGCTTTACTTGTATGCTATGGCTGTAGTTTCTAAGCATGGAAAGCC
AGATGCCTTCTTGGCTTTCACGTGTAATCCTAGATGGCGTGAGGTAACTG
AGAACTTACTTCCCAATCAGAAAGCGCACGACAGGCCTGATTTACTTACT
CGTGTGTTTCGCATGAAGTTATTTGCCATGAAAAAGGAAATAATGCAGGA
TGGTATTCTTGGAATGGTTGTTGCCCGTGTTGATGTGATTGAGTTCCAAA
AGCGTGGTTTTCCCCATGCACatattttgattcattttgcaGCTGAATTT
AAGTTGAGAAATGCAGATGATATTGACCGCTTGATTTGTCCACAGCTCCC
TGATCCAGAAACTGAACCTGAG Coding sequence (CDS) from alignment at scaffold_263:186733..187754 >TCONS_00055863 ID=TCONS_00055863|Name=TCONS_00055863|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_263:186733..187754 (Clytia hemisphaerica)
ATGCACCAGCTTTACTTGTATGCTATGGCTGTAGTTTCTAAGCATGGAAA
GCCAGATGCCTTCTTGGCTTTCACGTGTAATCCTAGATGGCGTGAGGTAA
CTGAGAACTTACTTCCCAATCAGAAAGCGCACGACAGGCCTGATTTACTT
ACTCGTGTGTTTCGCATGAAGTTATTTGCCATGAAAAAGGAAATAATGCA
GGATGGTATTCTTGGAATGGTTGTTGCCCGTGTTGATGTGATTGAGTTCC
AAAAGCGTGGTTTTCCCCATGCACatattttgattcattttgcaGCTGAA
TTTAAGTTGAGAAATGCAGATGATATTGACCGCTTGATTTGTCCACAGCT
CCCTGATCCAGAAACTGAACCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055863-exon-scaffold_263-1491911889:186733..187754 | TCONS_00055863-exon-scaffold_263-1491911889:186733..187754 | Clytia hemisphaerica | exon |
| TCONS_00055863-exon-scaffold_263-1510915933:186733..187754 | TCONS_00055863-exon-scaffold_263-1510915933:186733..187754 | Clytia hemisphaerica | exon |
| TCONS_00055863-exon-scaffold_263-1575043694:186733..187754 | TCONS_00055863-exon-scaffold_263-1575043694:186733..187754 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_263 | supercontig | scaffold_263:186733..187754 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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