TCONS_00055873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055873
Unique NameTCONS_00055873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055873 ID=TCONS_00055873|Name=TCONS_00055873|organism=Clytia hemisphaerica|type=transcript|length=1755bp
CCAAAAAAGTGATAGCGAGCAAAGTGATAGCGAGCAAAGTGATAGCGAGC
AGTCATGTTCAAAAGACGATACGGACGATACAGACACAGATGCAGATACA
GATATAGATCTCTCTGAGCCTTTTTCagaagatgaagatgatgagCAAGA
AAATATGGATATTGACGAAACTCTACTCAATTCACCTGATTTGAGGGATG
ATGATGAACTTTCTTCAGATGATTCGTTGCCATCTGAGATAAGTGACCAA
AGCTTGTCAGACGAAGATGTTCCAGTATCTGACGATCTCCATCATATATT
CGAGATGCTTAACCTCGACTGTGAATATGAGGATTGGTTAGAAGAAACTT
ACAAAGATGGATTTCTCACGTATGACGAGCCGTCATGTATCTTTTTACCT
GTAGAAGATTCCGTGCTCAAACAACCAGTTTATCCGGGCGCTGATTTCAC
GCTGATGGACGTATTAGCAAATGAACTTATGTGGTTTGCATCTACCCCGT
CGCTGAGTAAAAACGCACTTCAAAAACAGTTAAAGCTTAAAGCAAAAACC
TATCCGAAGGGAAATACCTATCCTGATACACTCCACAAGGTCTTTGCCCT
TGTCGGTCCTTACATGATACCACTAAGGCGGATTGAACTTTGCGTAAATG
ACTGCGTTGCGTTCGAACGCCAATACATATCTTTAAAGTCGTGTCCTGCC
TGTGGTCAAAGTCGGTATTCGTCCAATAATTCAGCAAGACGAGTTTTTTT
CTACATGTCAATGAAGGATCGCATTAGAAGACTTTTTGCAAATTATGAAA
CTTCCAAACTTCTACAAAGTCACGCAGAAGTAAAATTGCAAAATGTTATT
CACGATGTTCACGAAACAAAAAGATGGGTACCGAACACAGAAAACCCGAG
AAAAGTCAACCTGATTTTGAATACGGATGGTGTAAACCCGTACAGCATCA
GATGCAATTATTCAATGTGGCCAGTTATTTTGGCTATCGAAAACCTTCCG
AGGGCTGTCCGGTTTGATCGTAGTAATCTCTTACTCGGTGGCATAATTCC
TGCATGGAATGACGGGAAAGAAACGCCGAATATCAATATATATTCACAGA
TATTGATCAATGATATTGAGGACTGTCAAGATGCCTTAACCTACGATGCA
TACAGGTTTATACCTGAAAAACTCGAGAAAGATGGTATACATTGGGTATC
GGAATTACTTGCCAGCTGACCATCCATTAAGAAATGACGCAGTATTCCGT
TATAAATGCGAAGAATGTCCGAAATGCTACTCTACAATGGACTACAAGAA
ATTCGAAGACGAGTACAATGAAGGAAATGATAAAGAGAGGGTAAAGCTTA
CCAAAAGGACCGGATATCATGGGCCAACTCCATTTAATCAAATGCCAGTG
ATATCTTTTCATCTGCTGGTGCACATCGTCGAAGATTTACACAATGGACC
CATTCACACAAAGTGGATGTATGCCTTTGAAAGGTATAACTCGTATATTA
CAAGACGTGTAATGAGCAGATCGAATCCTGAGGCGTGTGTTATGAGAACC
CACAGAGTATACGATTGGATTTTTTATTTCAAAAATATCGGACAGTTACA
GACAATATACGAAGAAGACGAAGATATGACTGGCAAAGATTGATATTTAT
CATATTTTTTATTTCTCGCCAATTCAAAAATTATAACATTGTTCAATATT
ATATTATTTTCTTACGCCCTCAGAATATATTACAACCATATGTCAAAGAT
AATTG
Run BLAST on NCBI

transcript from alignment at scaffold_264:65590..70693+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055873 ID=TCONS_00055873|Name=TCONS_00055873|organism=Clytia hemisphaerica|type=transcript|length=5104bp|location=Sequence derived from alignment at scaffold_264:65590..70693+ (Clytia hemisphaerica)
CCAAAAAAGTGATAGCGAGCAAAGTGATAGCGAGCAAAGTGATAGCGAGC
AGTCATGTTCAAAAGACGATACGGACGATACAGACACAGATGCAGATACA
GATATAGATCTCTCTGAGCCTTTTTCagaagatgaagatgatgagCAAGG
TTTGTTTGGACTTCAGACTTAGAAAAATTTCACAGTCTAGCAGGGCAAAA
GGTCATTTACCACTTAAAGGGAACAGTTTTTTTctgcgggaactaaattt
ttacggatttccaaattacaaaaggaatttctGCTGTTTGTGTGAATTAT
ATACCctcaatttttctcatttttaaaaaatctgttCTTCTCAGAAAATA
TGGATATTGACGAAACTCTACTCAATTCACCTGATTTGAGGGATGATGAT
GAACTTTCTTCAGATGATTCGTTGCCATCTGAGATAAGTGACCAAAGCTT
GTCAGACGAAGATGTTCCAGTATCTGACGATCTCCATCATATATTCGAGA
TGCTTAACCTCGACTGTGAATATGAGGATTGGTTAGAAGAAACTTACAAA
GATGGATTTCTCACGTATGACGGTTCGTATTCTTTTTTCCTCGGGTACTT
AATAAACGGAGGTCTGGAATAAGCGGGGCggataaaaaaatcttaaactT
TCGGCAAAAGGCAATCTCGAAAAATTCCACGGCGGCGAATCTTTTTCTTG
GGGTTAAAGGTTTTGTAGCATGTCCCAGACGGACACAGACACGTCCCTGC
ACAGAGTGATGAAAGAATGTCGAGAGAAATTTTCTGGGGTGTAATTCTCA
ATActaaataattctttttataGAGCCGTCATGTATCTTTTTACCTGTAG
AAGATTCCGTGCTCAAACAACCAGTTTATCCGGGCGCTGATTTCACGCTG
ATGGACGTATTAGCAAATGAACTTATGTGGTTTGCATCTACCCCGTCGCT
GAGTAAAAACGCACTTCAAAAACAGTTAAAGCTTAAAGCAAAAACCTATC
CGAAGGGAAATACCTATCCTGATACACTCCACAAGGTCTTTGCCCTTGTC
GGTCCTTACATGATACCACTAAGGCGGATTGAACTTTGCGTAAATGACTG
CGTTGCGTTCGAACGCCAATACATATCTTTAAAGTCGTGTCCTGCCTGTG
GTCAAAGTCGGTATTCGTCCAATAATTCAGCAAGACGAGTTTTTTTCTAC
ATGTCAATGAAGGATCGCATTAGAAGACTTTTTGCAAATTATGAAACTTC
CAAACTTCTACAAAGTCACGCAGAAGTAAAGtacgtttttttattaattt
ttaaatatttccttttaggggaaatatttgttaaaacaggctttttttct
tcttctccttcttcaggTTTCActgctttttgaaatttggtgaGTTTTGT
ACGCTCCTGCattcgatgaaatttgaatcccacttgaaaattgaattaga
gagcgtaaAATATCAACAGACTTTTTGCATAGTCTAGGGATTCGTAATTT
TTCAGCTGAGAAGAGGGTTGACGAAATGCCAATGAATATAAAAAATCTAA
GAACATAAGAACATAGATTTGTCTTACTAGATTGCAAAATGTTATTCACG
ATGTTCACGAAACAAAAAGATGGGTACCGAACACAGAAAACCCGAGAAAA
GTCAACCTGATTTTGAATACGGATGGTGTAAACCCGTACAGCATCAGATG
CAATTATTCAATGTGGCCAGTTATTTTGGCTATCGAAAACCTTCCGAGGG
CTGTCCGGTTTGATCGTAGTAATCTCTTACTCGGTGGCATAATTCCTGCA
TGGAATGACGGGAAAGAAACGCCGAATATCAATATATATTCACAGATATT
GATCAATGATATTGAGGACTGTCAAGATGCCTTAACCTACGATGCATACA
GGTAAGGTATTTTTTTTTCATGAAATCAGATTATGTCAATTAGCTGCGTT
CTTTGCGGCTCTGGAGGACCCCCGTCTTTTACGGAATGTAATCTAAAATG
TCTTTTAAACGCTTATTTCGGCCGAATTTAGTGCTTTGGCCTCTTAGTTC
AGCTAAAAAAGGTCGAATCCTTTGCATCGGAATGAGGTCTAGGACCGCCA
TCGGGAGTCAGCCCAGTGGGGAGGGGATCAAAATATGCTGAATTCCCGCT
GAGCTAAGGTTCCAGTTACAGCCAGAGACCAAGATTTGCATTTCACTGCT
TTTCAGAGGTGATTGGTTCCATTTAGAAGTATCGATAGTAAAATATGTAC
TCGATTACCCTGGCATCAACAAATTATTTCACTTATCTGGATCGGGCGCT
TATTCTGGTTGCACATGGTGCGACATCAGAGGTTAATATATTATGATCAT
TTTGTTGTTTTCATCGTTTCAATAGTTTCGTAGAAACTATTAAAAAGGCA
TTTTTTATTAAATGAAAGTCTGAAGTCGCTCTTTTTGCACTTGCTAGTTG
TTAGTTGTTTTATTCTTTTCAAGGTTTATACCTGAAAAACTCGAGAAAGA
TGGTATACATTGGGTATCGGAATTACTTGCCAGCTGACCATCCATTAAGA
AATGACGCAGGTTAATAATccattcatttttttcactttttatactGTAG
GTAAATTTTCCTTGGGTAGCTAGTTTCGTGAATTGAGATTTTGGctgaaa
atataataaaactttcgcgaattcaaaaaatttaacttttttaaaacaaa
aactcgCTAAACACGAAAAGAATTAACAATCAGAGCAAAAACGGGCGTGT
ATGTAAATACTTAATCCCTCGCGTTGTCGACCGTATAACCCCCTTTTAAT
TTTAGTATTCCGTTATAAATGCGAAGAATGTCCGAAATGCTACTCTACAA
TGGACTACAAGAAATTCGAAGACGAGTACAATGAAGGAAATGATAAAGAG
AGGGTAAAGCTTACCAAAAGGACCGGATATCATGGGCCAACTCCATTTAA
TCAAATGCCAGTAAGAGAAAATAACATCGATTTGATTATAATTATTTTAC
CTTACTTCTACTGTTCAAAGTGGGAGTAGtaatttttctacttttcaaCT
GTTataataaatattcttatacaaattgtttccacactaTTAGGGGTTCG
ATTTTGTCAAACAGATCACGCCGGATCCGATGCACACTCTTACCAACATC
GTTAAGAANGGGTTCGATTTTGTCAAACAGATCACGCCGGATCCGATGCA
CACTCTTACCAACATCGTTAAGAAAATTGTAAGCTTTCTAGGGCAGAGAA
AAGGAGACATCGAAAAGTTCTTGAAGGATGACAATCTGCATAAAAGTAAG
TtatgtttttgcatttttatctACCCGCGATCTCTTAGATCTTCTGTCGT
AGACCGTTTCTTTAATCAAAGATACCAAAAGACCTGTGAAATACGCACTT
CTGTATACAGTACATAGTAAAACATAATTCAAACTCATCTTGTAGATTTA
ACCGGAGAAGAACGCTTTCAACTTACCTCTGAAGAAATCAAAATTGCCGA
TGAAAAAGTTTCCCTTCTGGCAGTAAGTTCATTTCTTTTCCGCGAGGCCA
TGACAATGACAATGTAGGGACGAAGTAAAGGGGCCAGATTACCCAATTAG
AATCGAAATTCTCTCTTTTATCTGTATGTAAACCTTTTCCCTAAGAAACG
TTTTACCTCCTTTTTTCAGAGAGCAAAGAAATTACGGGTGAATTCTATAT
TCAAGAAAGAAAAACCACTTTTGAAATCGCATGACTGGTACACGGTAAGA
AATTTTTTTGAGGGTCCTTACTTTAGCAGAATTTCTTTTCAATGTAATAG
CTGTAGTCTGTATCTCCGTCTTTCTGTGAATCGTCTCTTTCGTTTTCGCT
CTCAACTAACCCGATAAAAGTATAGTCCCGAGTATCCCGGCTAGTTTTTT
TTTAATATTTTGAAAAAGAGTACTACCCTTGCCGACCGACGGGGGTGCTC
CGCTGAAGTTCGAAAAATGGACCCTACGTGGGACTCGACTTTTCAAAAAT
GAGGAATGTTTTTTTATATTTTCAGCTTGTGAAGGAAGGAATTATCCAAG
ACGCTTTGTTTGGTCTACTACCAGAAACTCGTTAACGCTGCAAAGATTTT
TGGAAGTCTTGTGGAAATTATGAGTGAAAAGATTGACCTCAATGAATTGC
CTAAGCTGAAACTAAGATTTTACGAAGCCATGGCCTATCTTGAAAGAGAT
TTTCCACTGGCTTTAATGGTATTTTAGTACATTTGTATTGCTTTTAAAAT
TGTTTGAGATAAGGGTTTTAGACGGTTCAGTCTCTCGTCGTCGATTTTTA
AGGATTCAAGAACTGACAGCGGCACGTACCCTCTCCCATCTTGTTTACTT
ATTCGTTGGTGGTATCCCACGGTTTGAATGTATCCAAATCAAATGTATCT
ATCCATACTCCAATGTGATCAAATTGAATTTCACAAGAATAAATCTAGGA
TTTAGATTAGAGCTATGTTAAGAAGTACTGTGGATTAATTTTTTTTATTT
TCATTTTCATTCTTTTTAATAAAAGGTGATATCTTTTCATCTGCTGGTGC
ACATCGTCGAAGATTTACACAATGGACCCATTCACACAAAGTGGATGTAT
GCCTTTGAAAGGTATAACTCGTATATTACAAGACGTGTAATGAGCAGATC
GAATCCTGAGGCGTGTGTTATGAGAACCCACAGAGTAAGTTATACAGCCT
ATTTAACTCACAGACAATTATTCCCCTTAACAGTTATTCGATTTTTTTCT
ATTCCCAACTGGTTAATTTGGGAGGAAGTAAAAGAAATACCCAACCAAAG
TAGCTAACAAAGCATCTGTGATGATTTATTTCATTTGAATTATGAAAAAT
GCTTAATCTCAAATGTTGATAAAACGCTTTTATATTCATACCACTTTACC
AATAGGTATACGATTGGATTTTTTATTTCAAAAATATCGGACAGTTACAG
ACAATATACGAAGAAGACGAAGATATGACTGGCAAAGATTGATATTTATC
ATATTTTTTATTTCTCGCCAATTCAAAAATTATAACATTGTTCAATATTA
TATTATTTTCTTACGCCCTCAGAATATATTACAACCATATGTCAAAGATA
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035185XLOC_035185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055873-exon-scaffold_264-1491911889:65590..65738TCONS_00055873-exon-scaffold_264-1491911889:65590..65738Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:65590..65738TCONS_00055873-exon-scaffold_264-1510915933:65590..65738Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:65590..65738TCONS_00055873-exon-scaffold_264-1575043694:65590..65738Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1491911889:65934..66161TCONS_00055873-exon-scaffold_264-1491911889:65934..66161Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:65934..66161TCONS_00055873-exon-scaffold_264-1510915933:65934..66161Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:65934..66161TCONS_00055873-exon-scaffold_264-1575043694:65934..66161Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1491911889:66413..66869TCONS_00055873-exon-scaffold_264-1491911889:66413..66869Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:66413..66869TCONS_00055873-exon-scaffold_264-1510915933:66413..66869Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:66413..66869TCONS_00055873-exon-scaffold_264-1575043694:66413..66869Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1491911889:67170..67490TCONS_00055873-exon-scaffold_264-1491911889:67170..67490Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:67170..67490TCONS_00055873-exon-scaffold_264-1510915933:67170..67490Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:67170..67490TCONS_00055873-exon-scaffold_264-1575043694:67170..67490Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1491911889:68063..68149TCONS_00055873-exon-scaffold_264-1491911889:68063..68149Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:68063..68149TCONS_00055873-exon-scaffold_264-1510915933:68063..68149Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:68063..68149TCONS_00055873-exon-scaffold_264-1575043694:68063..68149Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1491911889:68395..68549TCONS_00055873-exon-scaffold_264-1491911889:68395..68549Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:68395..68549TCONS_00055873-exon-scaffold_264-1510915933:68395..68549Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:68395..68549TCONS_00055873-exon-scaffold_264-1575043694:68395..68549Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1491911889:70115..70273TCONS_00055873-exon-scaffold_264-1491911889:70115..70273Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:70115..70273TCONS_00055873-exon-scaffold_264-1510915933:70115..70273Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:70115..70273TCONS_00055873-exon-scaffold_264-1575043694:70115..70273Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1491911889:70495..70693TCONS_00055873-exon-scaffold_264-1491911889:70495..70693Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1510915933:70495..70693TCONS_00055873-exon-scaffold_264-1510915933:70495..70693Clytia hemisphaericaexon
TCONS_00055873-exon-scaffold_264-1575043694:70495..70693TCONS_00055873-exon-scaffold_264-1575043694:70495..70693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:65590..70693 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.335843	0	0	0.912696	0.235016	0.000370887	0.828157	0	0	0	0.321804	0.153461	0.400265	0	0	0	0	0	0	0.326404	0.730235	0	0.506903	0.0323902	0.0867225	0	0	0	0.34672
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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