TCONS_00055878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055878
Unique NameTCONS_00055878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055878 ID=TCONS_00055878|Name=TCONS_00055878|organism=Clytia hemisphaerica|type=transcript|length=2252bp
TGGGCCTCCAAAGAGTTTgaaaaatactgaagttgagcccagtgtgTTGC
TCATGTTCGACTATTGTTTAATTTGTTCTCTACAATAGACCTTGGCGAAA
AAAAAACGAGGAACAGAGGTTTCAACCACgttcaaaaagacaaaaagccT
CCCGGCTAATTTCAACTTAAAAACAGGGTGAGTTTTAATGAGGCACGAAA
CAGattaaatttgttgttctgttgttgttcagaatgttggaaaaatatgg
tcggtataattaaattaatttttcaaaatttggagtcAGCAAAAGTTTTT
GTGGGGTTGGGTATGTTATACTTCAATGAAAATTGTAATCAAAATGGTTT
CAGACATTTTGAGGCAAGGCGTCAAAAAACCACATTCCTTTGTTATTCAG
ACCGAAGTTTAGAAGACAAAATAGGGGGCAGTAGGTTATGACAGTTATGA
CAAAAACGTCGACTCATTTAATTCCAGGTACAAAGTTTATGTCGTTCACA
GGGCTTACGTGAGAGCCAAGAAAGTCGGAAAAGCCTTGGTTCTTGAGTCC
ACAGGTAACttagaaaatacaaagaatttaaatttttgtccATACTTTTA
TATTTGCTGCAACACTGAAGTAAGACTCAAATATTTATTTAAAGAATAgt
agtttgaattttttgtgaAGTACATAGTTCCAAAAATTACGTATAACGTA
TTTTGAGTgtacatactttttgaatggtcttTTACGAAACTTCCTTAAAT
TATGCTTCATATAAAGTTCCAAACATTTTGTGTATATATATTTTGATGAA
TCAGCATTTCCTATAAGTCTTTAGTACGTAAATTTCACAAATATGAATAA
ATTTGAGAAATTCATCCAACAATTATTTCTTTGTATTTACTTCAATAGAT
GATATGTACAAACTCTACTTGAATTCACAATACGATACTAAAACGCTGAT
TGAATTACCAAAACATCAAGAAAATTTGGTGGCTAATTTCCATCAACTGA
AGGTATCAGGGattttttcaagcactttgagcTACTACAGTTTTTGTATA
ATTATATTGAGTTTCAAATGCGATTTAGCTGGGGGTCTGGGGGTCGCTTT
AAGCCCCCCAGTGGGGGTTCTAAATTTGGCCCTAGATTGCtttaaacaag
aaaaaaaagtgaaaacattaATGCCGCCTAAGtaaaaatagaaagatttt
ggcccattttacgCCGGTCCTTTTAACGCGGCCCTTAATCACGCCAcgca
cgagcccaaaaataacgccattAAGggcatagtttctagaggggtcaaga
cccccccccaTTAGGTAAGAAGACCCTCCATTaggtaagaagaccccccc
TTAAGTGGGAACCCCAGCCATTCTAATTCGCGTCGGCATTCGGCTATTGC
TGACGCAAATGCCAACGTAAATTTGGGTTTTCTTTGTATAAGAAGTGTGA
TTTTCTCTCTGTGGGGTCTTGGGTAATTGTTCCCTTTCACCTTTTTATAG
CTTGGAAACATATTTTGGATTAAAAAGTGTGACACAAGTCCGGTCACACA
GAAAAAACCTACAACGAAACCAACCATCCCAAGAACAATCCCAACCATCC
CAAAAGCAGCTCAGCCtaccaagaaaaagaaaacgaaaacatCCACTCCA
AAGAGAAAAGATGTTTCATTTGAAATAGAAAATTCAGACATGGTTTTACA
GCAGTCAAATATACAGAATGTGACACCAACCTCTCAAAAAGGTATcctat
tttgaaacttttaattttGTGGTAAACATCTTTTTGCCTTAAGtagggga
ttaatttttgcgggaagtTATTTTTGTGAGGACGGGAATTGTAAATTTTT
CGTCAtgcaaaaagaaccaattgtATTGACGTGTAGCATGCcgtttattt
tggcgaatgacatcgtaaatctgttctattttgacttattttgagcaaat
ttgataaatttaagGGTTTATTTAGGCAAGAAAACgaagaatttaatttg
gcgggaacttttttggcgagtgagcaaaaaatttaattttggcgggaact
aattttggcgaatttcgtctaaatcagccaaatccgccaacattagttcc
cgcaaaaataagttcccttaaggtatttgtAACTtctatgataaaatgat
aaaaactttattacaattcttttttcagaaaaatcagataTGGTTTTACA
GTCCGATACTATACAGAATGTGACACCAACCTCTCAAAAAGGTATcctat
tt
Run BLAST on NCBI

transcript from alignment at scaffold_264:58420..60947-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055878 ID=TCONS_00055878|Name=TCONS_00055878|organism=Clytia hemisphaerica|type=transcript|length=2528bp|location=Sequence derived from alignment at scaffold_264:58420..60947- (Clytia hemisphaerica)
TGGGCCTCCAAAGAGTTTGAAAAATACTGAAGTTGAGCCCAGTGTGTTGC
TCATGTTCGACTATTGTTTAATTTGTTCTCTACAATAGACCTTGGCGAAA
AAAAAACGAGGAACAGAGGTTTCAACCACGTTCAAAAAGACAAAAAGCCT
CCCGGCTAATTTCAACTTAAAAACAGGGTGAGTTTTAATGAGGCACGAAA
CAGATTAAATTTGTTGTTCTGTTGTTGTTCAGAATGTTGGAAAAATATGG
TCGGTATAATTAAATTAATTTTTCAAAATTTGGAGTCAGCAAAAGTTTTT
GTGGGGTTGGGTATGTTATACTTCAATGAAAATTGTAATCAAAATGGTTT
CAGACATTTTGAGGCAAGGCGTCAAAAAACCACATTCCTTTGTTATTCAG
ACCGAAGTTTAGAAGACAAAATAGGGGGCAGTAGGTTATGACAGTTATGA
CAAAAACGTCGACTCATTTAATTCCAGGTACAAAGTTTATGTCGTTCACA
GGGCTTACGTGAGAGCCAAGAAAGTCGGAAAAGCCTTGGTTCTTGAGTCC
ACAGGTAACTTAGAAAATACAAAGAATTTAAATTTTTGTCCATACTTTTA
TATTTGCTGCAACACTGAAGTAAGACTCAAATATTTATTTAAAGAATAGT
AGTTTGAATTTTTTGTGAAGTACATAGTTCCAAAAATTACGTATAACGTA
TTTTGAGTGTACATACTTTTTGAATGGTCTTTTACGAAACTTCCTTAAAT
TATGCTTCATATAAAGTTCCAAACATTTTGTGTATATATATTTTGATGAA
TCAGCATTTCCTATAAGTCTTTAGTACGTAAATTTCACAAATATGAATAA
ATTTGAGAAATTCATCCAACAATTATTTCTTTGTATTTACTTCAATAGAT
GATATGTACAAACTCTACTTGAATTCACAATACGATACTAAAACGCTGAT
TGAATTACCAAAACATCAAGAAAATTTGGTGGCTAATTTCCATCAACTGA
AGGTATCAGGGATTTTTTCAAGCACTTTGAGCTACTACAGTTTTTGTATA
ATTATATTGAGTTTCAAATGCGATTTAGCTGGGGGTCTGGGGGTCGCTTT
AAGCCCCCCAGTGGGGGTTCTAAATTTGGCCCTAGATTGCTTTAAACAAG
AAAAAAAAGTGAAAACATTAATGCCGCCTAAGTAAAAATAGAAAGATTTT
GGCCCATTTTACGCCGGTCCTTTTAACGCGGCCCTTAATCACGCCACGCA
CGAGCCCAAAAATAACGCCATTAAGGGCATAGTTTCTAGAGGGGTCAAGA
CCCCCCCCCATTAGGTAAGAAGACCCTCCATTAGGTAAGAAGACCCCCCC
TTAAGTGGGAACCCCAGCCATTCTAATTCGCGTCGGCATTCGGCTATTGC
TGACGCAAATGCCAACGTAAATTTGGGTTTTCTTTGTATAAGAAGTGTGA
TTTTCTCTCTGTGGGGTCTTGGGTAATTGTTCCCTTTCACCTTTTTATAG
CTTGGAAACATATTTTGGATTAAAAAGTGTGACACAAGTCCGGTCACACA
GAAAAAACCTACAACGAAACCAACCATCCCAAGAACAATCCCAACCATCC
CAAAAGCAGCTCAGCCTACCAAGAAAAAGAAAACGAAAACATCCACTCCA
AAGAGAAAAGATGTTTCATTTGAAATAGGTAATTTTTCAAACACTTCTTT
AGGCAAGAAAACAAAAAATTTAATTTTGGCGGGAACTTATTTTGGCGAGT
GAGCAAAAAGTTTAATTTTTGCGGGAACTAATTTTGGCAAATTTGGTCTA
AATCGGCCAAATCCGCCAAAATTAGTTCCCGCAAAAATAAGTTCCCTTAA
GATATTTGTAACTTTACATGCACGTTCAAGTTTTTCGTGCATTGCCAGTA
CTCTTAAACTTCTATGATAAAATGATAAAAACTTTATTACAATTCTTTTC
TCAGAAAATTCAGACATGGTTTTACAGCAGTCAAATATACAGAATGTGAC
ACCAACCTCTCAAAAAGGTATCCTATTTTGAAACTTTTAATTTTGTGGTA
AACATCTTTTTGCCTTAAGTAGGGGATTAATTTTTGCGGGAAGTTATTTT
TGTGAGGACGGGAATTGTAAATTTTTCGTCATGCAAAAAGAACCAATTGT
ATTGACGTGTAGCATGCCGTTTATTTTGGCGAATGACATCGTAAATCTGT
TCTATTTTGACTTATTTTGAGCAAATTTGATAAATTTAAGGGTTTATTTA
GGCAAGAAAACGAAGAATTTAATTTGGCGGGAACTTTTTTGGCGAGTGAG
CAAAAAATTTAATTTTGGCGGGAACTAATTTTGGCGAATTTCGTCTAAAT
CAGCCAAATCCGCCAACATTAGTTCCCGCAAAAATAAGTTCCCTTAAGGT
ATTTGTAACTTCTATGATAAAATGATAAAAACTTTATTACAATTCTTTTT
TCAGAAAAATCAGATATGGTTTTACAGTCCGATACTATACAGAATGTGAC
ACCAACCTCTCAAAAAGGTATCCTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035186XLOC_035186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055878-exon-scaffold_264-1575043694:59270..60947TCONS_00055878-exon-scaffold_264-1575043694:59270..60947Clytia hemisphaericaexon
TCONS_00055878-exon-scaffold_264-1575043694:58420..58993TCONS_00055878-exon-scaffold_264-1575043694:58420..58993Clytia hemisphaericaexon
TCONS_00055878-exon-scaffold_264-1510915933:59270..60947TCONS_00055878-exon-scaffold_264-1510915933:59270..60947Clytia hemisphaericaexon
TCONS_00055878-exon-scaffold_264-1510915933:58420..58993TCONS_00055878-exon-scaffold_264-1510915933:58420..58993Clytia hemisphaericaexon
TCONS_00055878-exon-scaffold_264-1491911889:59270..60947TCONS_00055878-exon-scaffold_264-1491911889:59270..60947Clytia hemisphaericaexon
TCONS_00055878-exon-scaffold_264-1491911889:58420..58993TCONS_00055878-exon-scaffold_264-1491911889:58420..58993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:58420..60947 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361561	0.177598	0.868463	0.957716	0.188998	0.406568	0.381459	0.33441	0.212246	0.168544	0.0920731	0.272645	0.0835829	0	0.0180856	0	0	0.339326	0.397644	0.260597	0	0.0914867	0.247369	0	0	0	0.175418	0.265532	0	0.385648
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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