TCONS_00055885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055885
Unique NameTCONS_00055885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055885 ID=TCONS_00055885|Name=TCONS_00055885|organism=Clytia hemisphaerica|type=transcript|length=782bp
atagcctagaagcttGACGACTCAATGGAGATTTAAAAGAGATCAAGAAT
GAACTTTTTTGTATATTGTAGCTACAGGCCCTAAAATGTTAGCTTTGATA
TATATATTAGTGGTTGTATGTCTgctgttttttactttttagaagTCCTC
CCTATTTGTAAGCAAGATATCACTTTTCCTGTTCTTGTCTCTTTATTTCG
GCAACCACTGCTTGTCGCTTCATGTTGCTTCTGGGACCTACCTCTCGAAA
TGGTTGGAAATTTAGCAGGCCTACTCCCTCTTTCATCTTTAGCTTCTTGG
ACGGCGCCTACAATATCCGTATGGTTAAGATACGATATTTCTTGACAAGT
TGCTTCCTCCACCTTCCATTTTCTCCCAGTCTTCACCAGAGGGGGGTCCT
CTTTTATTCCACCGTTGTTCGAAAATCTTAGCATTATGACATATTAATGA
tatattattattttcaattgtcattgtttctttattattttcaagCTAGC
tagtaatttatttttgaattgatTTGTGATTATTAAATGATCATATGAAT
AATTAATTTCTAAATAATTCAATATTCTGTATATATTACTGTCAATTGGG
GTTACTTTCATAAGTGAGGGGTAACTTTCATCACCTGCTGTCCACAACAT
TTTCTGGTCCGCAATTAAAAAAGTGTGTTTTGAATTGAAAGAGGGTTGTT
GCAATAGACAGACTGTACCTTTAAAATTATAAAGGCTGGTgcgtccagtc
aaaacacagagtTGATCTGTAGCATCTCGCTT
Run BLAST on NCBI

protein sequence of TCONS_00055885-protein

>TCONS_00055885-protein ID=TCONS_00055885-protein|Name=TCONS_00055885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MLRFSNNGGIKEDPPLVKTGRKWKVEEATCQEISYLNHTDIVGAVQEAKD
ERGSRPAKFPTISRGRSQKQHEATSSGCRNKETRTGKVISCLQIGRTSKK
Run BLAST on NCBI

transcript from alignment at scaffold_264:56068..56849

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055885 ID=TCONS_00055885|Name=TCONS_00055885|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at scaffold_264:56068..56849 (Clytia hemisphaerica)
AAGCGAGATGCTACAGATCAactctgtgttttgactggacgcACCAGCCT TTATAATTTTAAAGGTACAGTCTGTCTATTGCAACAACCCTCTTTCAATT CAAAACACACTTTTTTAATTGCGGACCAGAAAATGTTGTGGACAGCAGGT GATGAAAGTTACCCCTCACTTATGAAAGTAACCCCAATTGACAGTAATAT ATACAGAATATTGAATTATTTAGAAATTAATTATTCATATGATCATTTAA TAATCACAAatcaattcaaaaataaattactaGCTAGcttgaaaataata aagaaacaatgacaattgaaaataataatataTCATTAATATGTCATAAT GCTAAGATTTTCGAACAACGGTGGAATAAAAGAGGACCCCCCTCTGGTGA AGACTGGGAGAAAATGGAAGGTGGAGGAAGCAACTTGTCAAGAAATATCG TATCTTAACCATACGGATATTGTAGGCGCCGTCCAAGAAGCTAAAGATGA AAGAGGGAGTAGGCCTGCTAAATTTCCAACCATTTCGAGAGGTAGGTCCC AGAAGCAACATGAAGCGACAAGCAGTGGTTGCCGAAATAAAGAGACAAGA ACAGGAAAAGTGATATCTTGCTTACAAATAGGGAGGActtctaaaaagta aaaaacagcAGACATACAACCACTAATATATATATCAAAGCTAACATTTT AGGGCCTGTAGCTACAATATACAAAAAAGTTCATTCTTGATCTCTTTTAA ATCTCCATTGAGTCGTCaagcttctaggctat

Coding sequence (CDS) from alignment at scaffold_264:56068..56849

>TCONS_00055885 ID=TCONS_00055885|Name=TCONS_00055885|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_264:56068..56849 (Clytia hemisphaerica)
ATGCTAAGATTTTCGAACAACGGTGGAATAAAAGAGGACCCCCCTCTGGT
GAAGACTGGGAGAAAATGGAAGGTGGAGGAAGCAACTTGTCAAGAAATAT
CGTATCTTAACCATACGGATATTGTAGGCGCCGTCCAAGAAGCTAAAGAT
GAAAGAGGGAGTAGGCCTGCTAAATTTCCAACCATTTCGAGAGGTAGGTC
CCAGAAGCAACATGAAGCGACAAGCAGTGGTTGCCGAAATAAAGAGACAA
GAACAGGAAAAGTGATATCTTGCTTACAAATAGGGAGGActtctaaaaag
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035192XLOC_035192Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055885-proteinTCONS_00055885-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055885-exon-scaffold_264-1491911889:56068..56849TCONS_00055885-exon-scaffold_264-1491911889:56068..56849Clytia hemisphaericaexon
TCONS_00055885-exon-scaffold_264-1510915933:56068..56849TCONS_00055885-exon-scaffold_264-1510915933:56068..56849Clytia hemisphaericaexon
TCONS_00055885-exon-scaffold_264-1575043694:56068..56849TCONS_00055885-exon-scaffold_264-1575043694:56068..56849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:56068..56849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.03537 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247663 0.181133 0 0.068586 0.333988 0.395882 0.796025 0.149046 0.678278 0.452392 0.439103 0.412356 0.164713 0.342112 0.527367 0.415027 1.162 0.857528 0.592361 0.895357 2.03537 1.75196 0.780906 0.709957 0 0.177985 1.44328 0.271819 0.962104 0.910215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700Sequence
Match NameE-valueIdentityDescription
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