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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055892 ID=TCONS_00055892|Name=TCONS_00055892|organism=Clytia hemisphaerica|type=transcript|length=2149bpRun BLAST on NCBI protein sequence of TCONS_00055892-protein >TCONS_00055892-protein ID=TCONS_00055892-protein|Name=TCONS_00055892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp MLILGVEIKSKKRFNMAKIVKVLGTMGMGGPLNEFQSHKILKQWSELGQKRun BLAST on NCBI transcript from alignment at scaffold_265:17511..42167+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055892 ID=TCONS_00055892|Name=TCONS_00055892|organism=Clytia hemisphaerica|type=transcript|length=24657bp|location=Sequence derived from alignment at scaffold_265:17511..42167+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_265:17511..42167+ >TCONS_00055892 ID=TCONS_00055892|Name=TCONS_00055892|organism=Clytia hemisphaerica|type=CDS|length=10230bp|location=Sequence derived from alignment at scaffold_265:17511..42167+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055892 vs. Swiss-Prot (Human)
Match: ARK74 (Aflatoxin B1 aldehyde reductase member 4 OS=Homo sapiens GN=AKR7L PE=1 SV=6) HSP 1 Score: 312.768 bits (800), Expect = 2.576e-99 Identity = 154/340 (45.29%), Postives = 213/340 (62.65%), Query Frame = 3
Query: 93 KKRFNMAKIVKVLGTMGMGGPLNEFQSHKILKQWSELGQKEIDTAIMYQNGKTEEIIGKL------SSCRNPKKIKIACKANPKKG--FKCEDIIKQLDDSLGALRVPTCDIFYLHWPDHETPIEDTLKGVNQLYQDGKFKEFGLSNYSSWQVADIYHICKENNYPLPTVYQGMYNALTRDIEQELIPALRRFGIRFYVYNPLAGGMLSGKYNFNEEDTDQPKGRFFATGKADLSNQWVKAYRDRYWRDQYKGGIQVIQKVLSETYNNDV-SLLQAAMRWMVHHSQLK--DNDGVILGFSKEEHLIPNVDALDDGPLHEDVVKVFDEAWQNIKSGCPSYY 1079
++ + A+ VLG M MG ++ S + + + E G EIDTA +Y +G++E I+G L S CR +KIA KANP G K + + QL+ SL L+ P D+FYLH PDH P+E+TL+ +QL+Q+GKF E GLSNY++W+VA+I +CK N + LPTVYQGMY+A TR +E EL P LR FG+RFY YNPLAGG+L+GKY + ++D QP GRFF T QW + YR+ +W++ + GI +++K L Y S+ AA+RWM HHSQL+ D VILG S E L N+ A ++GPL VV F++AW CP+Y+
Sbjct: 2 SRQLSRARPATVLGAMEMGRRMDAPTSAAVTRAFLERGHTEIDTAFLYSDGQSETILGGLGLRMGSSDCR----VKIATKANPWIGNSLKPDSVRSQLETSLKRLQCPUVDLFYLHAPDHSAPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYSATTRQVETELFPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQPVGRFFGT-------QWAEIYRNHFWKEHHFEGIALVEKALQAAYGASAPSMTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNLAAAEEGPLEPAVVDAFNQAWHLFAHECPNYF 330 The following BLAST results are available for this feature:
BLAST of TCONS_00055892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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