TCONS_00055894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055894
Unique NameTCONS_00055894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055894 ID=TCONS_00055894|Name=TCONS_00055894|organism=Clytia hemisphaerica|type=transcript|length=715bp
acagaaattaacattaaaaaggaaaataaaaagaaaaaagaaactgaaaa
aaagttaaagaaaacagaaaaatccAGTCAATAGAAATGTCGTTCGATTT
CAATGGAAGGGTTGCACTTATCACAGGTGCGAGCTCAGGTATCGGTAAAG
GGGCAGCAATCTACTTGGCAAAGAATGGTGCAAAATTAGCAATCACTGGA
AGAAACGAAGAAAATTTGAAGCTTGTGGCGACTCAATGTGAAGATGTTTG
CCCAAATAAAGAAAAGGTATTGACGATCGTTGGTGATTTAAGCAAAGAAG
AAGATACagcaagaacaatagaagaGACTATCAAACACTTTAACCAATTG
GATATCTTGgtaAACAGCGCGGGTATTGTTGTGAATGGGACAGCAGAGTC
AACAAGCCTTCAGGATTACGACATGCAAATGAACATTAACTTGAGGTCGG
TTTTTCACATTACGAAACTAGCAATACCACACTTGATCAAAACTAAAGGA
AACATTGTAAATGTATCAAGCGTAACTGGCCTTCGTTCGTTTCCAGGGGT
TTCGACGTATTGCATGTCGAAAGCAGCCTTAGACCAATACACAAGGACAA
CAGCATTGGAGCTTGCATCTCAGCAAGTCAGATGTAACGCAGTCAATCCT
GGTGTCATAAGAACAGAGATTCATAAACGAGGCGGTATGTCTGAAGAAGA
TTATGCAAAGGTTTG
Run BLAST on NCBI

protein sequence of TCONS_00055894-protein

>TCONS_00055894-protein ID=TCONS_00055894-protein|Name=TCONS_00055894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MSFDFNGRVALITGASSGIGKGAAIYLAKNGAKLAITGRNEENLKLVATQ
CEDVCPNKEKVLTIVGDLSKEEDTARTIEETIKHFNQLDILVNSAGIVVN
GTAESTSLQDYDMQMNINLRSVFHITKLAIPHLIKTKGNIVNVSSVTGLR
SFPGVSTYCMSKAALDQYTRTTALELASQQVRCNAVNPGVIRTEIHKRGG
MSEEDYAKV
Run BLAST on NCBI

transcript from alignment at scaffold_265:42253..45692+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055894 ID=TCONS_00055894|Name=TCONS_00055894|organism=Clytia hemisphaerica|type=transcript|length=3440bp|location=Sequence derived from alignment at scaffold_265:42253..45692+ (Clytia hemisphaerica)
acagaaattaacattaaaaaggaaaataaaaagaaaaaagaaactgaaaa
aaagttaaagaaaacagaaaaatccAGTCAATAGAAATGTCGTTCGATTT
CAATGGAAGGGTTGCACTTATCACAGGTAAGAATCAATCGATCAAAATTC
CGTGATGTACTTACCAAATCCTCCTTgtaaaaaattgacgaaaaaagaCA
AAACTAGTTGCTGCACCTTTGATGATAGCCAGCTAGCTACTAACACATCT
ATACAAGTTTCGATATGCTCTTGTTTATTCGATTCATCTTCAGGTGCGAG
CTCAGGTATCGGTAAAGGGGCAGCAATCTACTTGGCAAAGAATGGTGCAA
AATTAGCAATCACTGGAAGAAACGAAGAAAATTTGAAGCTTGTGGCGACT
CAATGTGAAGATGTTTGCCCAAATAAAGAAAAGGTATTGCTCTGACCAtt
tcaataattaaaaaatatatatactttTGACTCTTTGGGCGCAATATATA
CATTTGCCTTTATATGAAATGCCATTCCAAAGCCTTCCCAGGTCCATGCA
ATTTTTGCGCTCATAAAGTTTTAATGGTCTCTCCATGATAAATTTTAGAA
TATTTACTACgttcccccgggggggggggaggcactccaggtaagtgacc
taccggacgtgcggcccttaagggtaggctTTTTGGAGTTTGGAAAgttt
gcactgtaagggttgatttgtgagcaagtgggaaaaagtgcactgtaagg
gggTAAAATTCgggaaaataccaaattttgagataaaatttgagaaattt
aaaaaattttcgccctgaaaagggcaaaaagtttcgaaaaatcGCATTAT
AAGGgacgattttcagccaaaatcaagtgcccccccccccgggtacgTTC
CACACTGGTTGTAAAAACAACCTATTACCACATTAATCTTTTTTACCATT
CGAGGACCTCGGTGAATTTTAGTGCTGAATTTTCATCACATCTCTCATAT
CTCTCCAGGTATTGACGATCGTTGGTGATTTAAGCAAAGAAGAAGATACa
gcaagaacaatagaagaGACTATCAAACACTTTAACCAATTGGATATCTT
GGTAATGTTTTCTACCCTTGACGTTATTTTGTGGAAGTGAACAACGATGA
AGGTAGATTTTAAAAGAGGTGCAGTTATTGACTTTCTGCAAATGTGTGAG
GGGAGAGTCGAGTTATTTTTGTCAAAGCTAGTTGCAAACTgtcaaacttt
cattttcaggtaAACAGCGCGGGTATTGTTGTGAATGGGACAGCAGAGTC
AACAAGCCTTCAGGATTACGACATGCAAATGAACATTAACTTGAGGTATT
TGTAATCTCAACCGCATATAGCAAACGTCACGATTTAATGTAAGCCTGTA
AGTACATGTATAAAAATTAGAGACCCGTAATATCACCATCTCTTCTCTTT
TCAGGTCGGTTTTTCACATTACGAAACTAGCAATACCACACTTGATCAAA
ACTAAAGGTATACTACATAACCATTTCACCTTTTCCGATCTCGTTGGAAT
GTCGGGCTTACCATTCTTTGTTCCTATTATGGGTTATGATATTATTCGCT
GTGATGGTTTCCAAAGATACAccactaatacaataatgaccggttagtga
gggctgttgaaatattgcccgaggtcaagtaacgaccgagcttgcgaggt
tgttgcgttgaccaagggcaatattttcagtacagcccgaaaaaaccggt
cattattgtatttgttaaccgtttccttcagcttcgattgatttttagcg
ctttatccaggaaaaatagcgaaataaagaaatcaaaaattgttttattt
tttgacgtcagaaacaaaaaatgagagaaatgatgtcaacgtattgttca
ttttcctttgaaaaagtgacgtcacaatgaatcttcctaacgacgggcaa
ctctgggcaatgtaggcccgtcgtcatacgaaaagaaccaattgcattgc
gcaaaaagtcgtgtagcccgctttgaaaaagtaaccggttaacaatttTC
CATTTCGAATGTTTGATTGGGCTGTTCTAAttaatatccatacagggggg
ttgacgaactttttcaagccaaaaataATTCTTCAAATGTGTGGATACTC
CCTGGATAATtgcaagattttcaaaaaacgccCTCGGAAAAGTACttctt
cataccttaaagtgaggtaGGATGACTAAGTCATTCTTAACTTTCTTATC
ACTAATAACTTTTTACGccctgagaaaattagaaaagCTTTCTTTCTTGA
CACTCTGGAAATTCTTCTTCAGGTTACCCCCTAGTAAAATACGCCCActc
cctgtatggatataaaattgaATGGCCCATTAGTTGTCATAGGACATAAT
CTATATAACAAAATTTACTTCAATTTCTCGAATCATCAACGATCGCATCG
CGAACAATTTtccaattcaatttcattttgtagGAAACATTGTAAATGTA
TCAAGCGTAACTGGCCTTCGTTCGGTAATTAATACGTTTTTCATCGGCAA
TCAATCACCTGCATATTTTACAATTCTTGTTTAGAATATTGAATAAAGTA
AAATTCACAAATCTTAACTGGTGTAACAAGGTCCTAATTTAAGGGAGCTG
AAGAGAGTGCCAAACACATTAGACGTTCTTTTCTAACATTGGATTCCAAC
tattaaagaaaacaatttgacCTTCGCTAGATTTTGGACTATGTTTGAAG
GTTAGGCTTAGGGGTAGCTCTAATTAAAAGAGATCCTAGATAGGGCCATC
ttgatttaataattttttatcttgactactattctcaacttcagttgagc
tagaatctgtcAGTCTGTCACctcaaaactttagggcaggctggagactt
caaaaatggtcggattcgggcgtggtcacgagtttgagcctcaaaacgag
gctaaaaactttGGTGCTGGCTggtgacttcaaaaatggtccgattctGC
CGACATTTTGCACACttttccttgggtgaatatcgaATATCTGGggttgt
tttcttcattttaagggcgtggtcacaaaGTTCAGCTCAAaacgaagcaa
aaaaatttcttatatcaaaaatttttctgTTGATGTTTACACTTGGACCT
GCGGGTAATTTAAAAGATACTGAatttgagccagtgcggttagcacgttc
gaaaGTATTTTACTGAACTTTTTAAACATCTTGCCTATCCTTATTAATGA
ATTTTTAATGTTAGTTTCCAGGGGTTTCGACGTATTGCATGTCGAAAGCA
GCCTTAGACCAATACACAAGGACAACAGCATTGGAGCTTGCATCTCAGCA
AGTCAGATGTAACGCAGTCAATCCTGGTGTCATAAGAACAGAGATTCATA
AACGAGGCGGTATGTCTGAAGAAGATTATGCAAAGGTTTG

Coding sequence (CDS) from alignment at scaffold_265:42253..45692+

>TCONS_00055894 ID=TCONS_00055894|Name=TCONS_00055894|organism=Clytia hemisphaerica|type=CDS|length=4389bp|location=Sequence derived from alignment at scaffold_265:42253..45692+ (Clytia hemisphaerica)
ATGTCGTTCGATTTCAATGGAAGGGTTGCACTTATCACAGGTGCGAGCTC
AGGTATCGGTAAAGGGGCAGCAATCTACTTGGCAAAGAATGGTGCAAAAT
TAGCAATCACTGGAAGAAACGAAGAAAATTTGAAGCTTGTGGCGACTCAA
TGTGAAGATGTTTGCCCAAATAAAGAAAAGGTATTGACGATCGTTGGTGA
TTTAAGCAAAGAAGAAGATACagcaagaacaatagaagaGACTATCAAAC
ACTTTAACCAATTGGATATCTTGgtaAACAGCGCGGGTATTGTTGTGAAT
GGGACAGCAGAGTCAACAAGCCTTCAGGATTACGACATGCAAATGAACAT
TAACTTGAGGTCGGTTTTTCACATTACGAAACTAGCAATACCACACTTGA
TCAAAACTAAAGGAAACATTGTAAATGTATCAAGCGTAACTGGCCTTCGT
TCGTTTCCAGGGGTTTCGACGTATTGCATGTCGAAAGCAGCCTTAGACCA
ATACACAAGGACAACAGCATTGGAGCTTGCATCTCAGCAAGTCAGATGTA
ACGCAGTCAATCCTGGTGTCATAAGAACAGAGATTCATAAACGAGGCGGT
ATGTCTGAAGAAGATTATGCAAAGGTTATGTCGTTCGATTTCAATGGAAG
GGTTGCACTTATCACAGGTGCGAGCTCAGGTATCGGTAAAGGGGCAGCAA
TCTACTTGGCAAAGAATGGTGCAAAATTAGCAATCACTGGAAGAAACGAA
GAAAATTTGAAGCTTGTGGCGACTCAATGTGAAGATGTTTGCCCAAATAA
AGAAAAGGTATTGACGATCGTTGGTGATTTAAGCAAAGAAGAAGATACag
caagaacaatagaagaGACTATCAAACACTTTAACCAATTGGATATCTTG
gtaAACAGCGCGGGTATTGTTGTGAATGGGACAGCAGAGTCAACAAGCCT
TCAGGATTACGACATGCAAATGAACATTAACTTGAGGTCGGTTTTTCACA
TTACGAAACTAGCAATACCACACTTGATCAAAACTAAAGGAAACATTGTA
AATGTATCAAGCGTAACTGGCCTTCGTTCGTTTCCAGGGGTTTCGACGTA
TTGCATGTCGAAAGCAGCCTTAGACCAATACACAAGGACAACAGCATTGG
AGCTTGCATCTCAGCAAGTCAGATGTAACGCAGTCAATCCTGGTGTCATA
AGAACAGAGATTCATAAACGAGGCGGTATGTCTGAAGAAGATTATGCAAA
GGTTATGTCGTTCGATTTCAATGGAAGGGTTGCACTTATCACAGGTGCGA
GCTCAGGTATCGGTAAAGGGGCAGCAATCTACTTGGCAAAGAATGGTGCA
AAATTAGCAATCACTGGAAGAAACGAAGAAAATTTGAAGCTTGTGGCGAC
TCAATGTGAAGATGTTTGCCCAAATAAAGAAAAGGTATTGACGATCGTTG
GTGATTTAAGCAAAGAAGAAGATACagcaagaacaatagaagaGACTATC
AAACACTTTAACCAATTGGATATCTTGgtaAACAGCGCGGGTATTGTTGT
GAATGGGACAGCAGAGTCAACAAGCCTTCAGGATTACGACATGCAAATGA
ACATTAACTTGAGGTCGGTTTTTCACATTACGAAACTAGCAATACCACAC
TTGATCAAAACTAAAGGAAACATTGTAAATGTATCAAGCGTAACTGGCCT
TCGTTCGTTTCCAGGGGTTTCGACGTATTGCATGTCGAAAGCAGCCTTAG
ACCAATACACAAGGACAACAGCATTGGAGCTTGCATCTCAGCAAGTCAGA
TGTAACGCAGTCAATCCTGGTGTCATAAGAACAGAGATTCATAAACGAGG
CGGTATGTCTGAAGAAGATTATGCAAAGGTTATGTCGTTCGATTTCAATG
GAAGGGTTGCACTTATCACAGGTGCGAGCTCAGGTATCGGTAAAGGGGCA
GCAATCTACTTGGCAAAGAATGGTGCAAAATTAGCAATCACTGGAAGAAA
CGAAGAAAATTTGAAGCTTGTGGCGACTCAATGTGAAGATGTTTGCCCAA
ATAAAGAAAAGGTATTGACGATCGTTGGTGATTTAAGCAAAGAAGAAGAT
ACagcaagaacaatagaagaGACTATCAAACACTTTAACCAATTGGATAT
CTTGgtaAACAGCGCGGGTATTGTTGTGAATGGGACAGCAGAGTCAACAA
GCCTTCAGGATTACGACATGCAAATGAACATTAACTTGAGGTCGGTTTTT
CACATTACGAAACTAGCAATACCACACTTGATCAAAACTAAAGGAAACAT
TGTAAATGTATCAAGCGTAACTGGCCTTCGTTCGTTTCCAGGGGTTTCGA
CGTATTGCATGTCGAAAGCAGCCTTAGACCAATACACAAGGACAACAGCA
TTGGAGCTTGCATCTCAGCAAGTCAGATGTAACGCAGTCAATCCTGGTGT
CATAAGAACAGAGATTCATAAACGAGGCGGTATGTCTGAAGAAGATTATG
CAAAGGTTATGTCGTTCGATTTCAATGGAAGGGTTGCACTTATCACAGGT
GCGAGCTCAGGTATCGGTAAAGGGGCAGCAATCTACTTGGCAAAGAATGG
TGCAAAATTAGCAATCACTGGAAGAAACGAAGAAAATTTGAAGCTTGTGG
CGACTCAATGTGAAGATGTTTGCCCAAATAAAGAAAAGGTATTGACGATC
GTTGGTGATTTAAGCAAAGAAGAAGATACagcaagaacaatagaagaGAC
TATCAAACACTTTAACCAATTGGATATCTTGgtaAACAGCGCGGGTATTG
TTGTGAATGGGACAGCAGAGTCAACAAGCCTTCAGGATTACGACATGCAA
ATGAACATTAACTTGAGGTCGGTTTTTCACATTACGAAACTAGCAATACC
ACACTTGATCAAAACTAAAGGAAACATTGTAAATGTATCAAGCGTAACTG
GCCTTCGTTCGTTTCCAGGGGTTTCGACGTATTGCATGTCGAAAGCAGCC
TTAGACCAATACACAAGGACAACAGCATTGGAGCTTGCATCTCAGCAAGT
CAGATGTAACGCAGTCAATCCTGGTGTCATAAGAACAGAGATTCATAAAC
GAGGCGGTATGTCTGAAGAAGATTATGCAAAGGTTATGTCGTTCGATTTC
AATGGAAGGGTTGCACTTATCACAGGTGCGAGCTCAGGTATCGGTAAAGG
GGCAGCAATCTACTTGGCAAAGAATGGTGCAAAATTAGCAATCACTGGAA
GAAACGAAGAAAATTTGAAGCTTGTGGCGACTCAATGTGAAGATGTTTGC
CCAAATAAAGAAAAGGTATTGACGATCGTTGGTGATTTAAGCAAAGAAGA
AGATACagcaagaacaatagaagaGACTATCAAACACTTTAACCAATTGG
ATATCTTGgtaAACAGCGCGGGTATTGTTGTGAATGGGACAGCAGAGTCA
ACAAGCCTTCAGGATTACGACATGCAAATGAACATTAACTTGAGGTCGGT
TTTTCACATTACGAAACTAGCAATACCACACTTGATCAAAACTAAAGGAA
ACATTGTAAATGTATCAAGCGTAACTGGCCTTCGTTCGTTTCCAGGGGTT
TCGACGTATTGCATGTCGAAAGCAGCCTTAGACCAATACACAAGGACAAC
AGCATTGGAGCTTGCATCTCAGCAAGTCAGATGTAACGCAGTCAATCCTG
GTGTCATAAGAACAGAGATTCATAAACGAGGCGGTATGTCTGAAGAAGAT
TATGCAAAGGTTATGTCGTTCGATTTCAATGGAAGGGTTGCACTTATCAC
AGGTGCGAGCTCAGGTATCGGTAAAGGGGCAGCAATCTACTTGGCAAAGA
ATGGTGCAAAATTAGCAATCACTGGAAGAAACGAAGAAAATTTGAAGCTT
GTGGCGACTCAATGTGAAGATGTTTGCCCAAATAAAGAAAAGGTATTGAC
GATCGTTGGTGATTTAAGCAAAGAAGAAGATACagcaagaacaatagaag
aGACTATCAAACACTTTAACCAATTGGATATCTTGgtaAACAGCGCGGGT
ATTGTTGTGAATGGGACAGCAGAGTCAACAAGCCTTCAGGATTACGACAT
GCAAATGAACATTAACTTGAGGTCGGTTTTTCACATTACGAAACTAGCAA
TACCACACTTGATCAAAACTAAAGGAAACATTGTAAATGTATCAAGCGTA
ACTGGCCTTCGTTCGTTTCCAGGGGTTTCGACGTATTGCATGTCGAAAGC
AGCCTTAGACCAATACACAAGGACAACAGCATTGGAGCTTGCATCTCAGC
AAGTCAGATGTAACGCAGTCAATCCTGGTGTCATAAGAACAGAGATTCAT
AAACGAGGCGGTATGTCTGAAGAAGATTATGCAAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035196XLOC_035196Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055894-proteinTCONS_00055894-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055894-exon-scaffold_265-1491911889:42253..42378TCONS_00055894-exon-scaffold_265-1491911889:42253..42378Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1510915933:42253..42378TCONS_00055894-exon-scaffold_265-1510915933:42253..42378Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1575043694:42253..42378TCONS_00055894-exon-scaffold_265-1575043694:42253..42378Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1491911889:42546..42685TCONS_00055894-exon-scaffold_265-1491911889:42546..42685Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1510915933:42546..42685TCONS_00055894-exon-scaffold_265-1510915933:42546..42685Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1575043694:42546..42685TCONS_00055894-exon-scaffold_265-1575043694:42546..42685Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1491911889:43261..43353TCONS_00055894-exon-scaffold_265-1491911889:43261..43353Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1510915933:43261..43353TCONS_00055894-exon-scaffold_265-1510915933:43261..43353Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1575043694:43261..43353TCONS_00055894-exon-scaffold_265-1575043694:43261..43353Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1491911889:43512..43597TCONS_00055894-exon-scaffold_265-1491911889:43512..43597Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1510915933:43512..43597TCONS_00055894-exon-scaffold_265-1510915933:43512..43597Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1575043694:43512..43597TCONS_00055894-exon-scaffold_265-1575043694:43512..43597Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1491911889:43707..43759TCONS_00055894-exon-scaffold_265-1491911889:43707..43759Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1510915933:43707..43759TCONS_00055894-exon-scaffold_265-1510915933:43707..43759Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1575043694:43707..43759TCONS_00055894-exon-scaffold_265-1575043694:43707..43759Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1491911889:44736..44776TCONS_00055894-exon-scaffold_265-1491911889:44736..44776Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1510915933:44736..44776TCONS_00055894-exon-scaffold_265-1510915933:44736..44776Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1575043694:44736..44776TCONS_00055894-exon-scaffold_265-1575043694:44736..44776Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1491911889:45517..45692TCONS_00055894-exon-scaffold_265-1491911889:45517..45692Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1510915933:45517..45692TCONS_00055894-exon-scaffold_265-1510915933:45517..45692Clytia hemisphaericaexon
TCONS_00055894-exon-scaffold_265-1575043694:45517..45692TCONS_00055894-exon-scaffold_265-1575043694:45517..45692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:42253..45692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9179	16.4256	23.6605	23.4556	10.1437	8.44301	14.7139	13.59	14.1807	13.6952	8.94709	13.7311	12.5673	8.54077	19.5084	24.1547	29.2776	31.2447	7.90048	6.16147	13.5581	13.4908	12.7915	9.11427	10.4144	10.1125	20.1476	12.7228	9.81385	11.2184
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00055894 vs. Swiss-Prot (Human)
Match: CBR4 (Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.456e-23
Identity = 60/172 (34.88%), Postives = 92/172 (53.49%), Query Frame = 3 
Query:  165 LAKNGAKLAITGRNEENLKLVATQCEDVCPNKEKVLTIVGDLSKEEDTARTIEETIKHFNQLDILVNSAGIVVNGTAESTSLQDYDMQMNINLRSVFHITKLAIPHLIKTKG-NIVNVSSVTGLRSFPGVSTYCMSKAALDQYTRTTALELASQQVRCNAVNPGVIRTEIHK 677
            +A+ G +LA+  RN E  K  A    D+  +    L    D++KE D   T EE  KH  +++ LVN+AGI  +G    T  +D   Q++ NL       K A+  +I+ +G +IVNV S+ GL+   G S Y  SK  L  ++R  A E+A +++R N V PG + T++ K
Sbjct:   22 MARKGYRLAVIARNLEGAKAAAG---DLGGDH---LAFSCDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTK 187
The following BLAST results are available for this feature:
BLAST of TCONS_00055894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBR44.456e-2334.88Carbonyl reductase family member 4 OS=Homo sapiens... [more]
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