TCONS_00055895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055895
Unique NameTCONS_00055895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055895 ID=TCONS_00055895|Name=TCONS_00055895|organism=Clytia hemisphaerica|type=transcript|length=2568bp
AGGAGATTGAAATGATGGAGAGGAACAATCAGAATAGCTCCACAGAGGCT
ATCAACGGCCATGCTACAAAACCAGTACCAAATAATGATGCTAAAAACCA
TCCCAACTCTACTCAAGATAGCCGACCCAACTCCGTCGCGTCATTGTTTA
ATGACAATGACGTCAATCAGAATAACGGCGATACTGTCAATCGTAATGGT
GTCGGTATGATCGATGACGCATCCCGACGAAACTCGGTACGGTTCTCGTC
ACGACGACTATCGAGATGTTCGTCGAGAGCAAGTTGTCGAAGTCACCGAG
GGTTAGCACCGGTCAAGAAAGAGTCACCCGTCGAAGATATTAAAGATCCA
GAGGACGGTGAAGGTGAGGACACAGGTgatgaagaggaagaagaagaagg
accAGTGGATTTGAGTTGGCCTGATGAAATTTTCGAACGCATCTTCTACG
TCATCAAAGCACCTTTACTCTTCGTCATGGTCTTGACTGTACCTGATGTT
CGGCGACCGaaatttaaaaagttgtttCCACTGACGTTTACGTTGAGCAT
CGTATGGATAGCCGTATTCTCCTACCTCATGTTATGGTGGGCTTCAGAAA
TCGGAAGAGCTGCCGGAATTGACGTTGAGATCATGGGATTGACCTTTATA
GCGGCTGGGACGAGCATTCCAGATTTAATCACCAGTGTGGTGGTTGCACG
CCAAGGACTTGGGGATATGGCAGTGTCCAGTTCTATTGGATCGAATATCT
TTGATGTTACAGTTGGGTTACCGTTACCTTGGTTAGCATACAGTATGTCG
AAAAGTTTCAAGGACGTCGTGGTAAAAAACTCCGGACTTTTTTGTTCCAC
CATCCTCTTGTTCTTAATGTTGGTAGCTGTAGTAATCACCATCGCACTCA
GTAAATGGAGGATGACCAAAATGTTGGGTGGAATCATGTTTGGTTTATAT
GTCGTGTTCATTACACTGACTTTGTTGCTACAATTAGATGTCTTCGCATG
CCCTTTCGGATGAGCTATGTAACAGTTAAAGGGGTGTGTTCTTTTGATTG
GAGGAAATTTATTGAGAAAAGAACTTTTATGCCATTCTCTTGGGAATTGA
CACCTAATTTGTCAAGTGATCCTCGACCTCTGAGCAGAGAGTGAATGTTA
TGAAAGATCTACAATTCAAATTGCAAATCAGTTGCAAAAGTCGAAACCCG
AGGAGCTGGCAAATTTGAAACTCACTGCAAAAATGAAGAGGGGAGACTGG
ATGAAAATCAAAACTGATGTAGAAATCAAATTCGGGTGATTTTTATCAGA
AAAGCAATTTAACGGGAATGCTTTTAGGCTGACTAAAAACAAATGATTTC
TTTGCAGATAAAGTCGGAACTTATGGACTTATCTTCTCTTCGACGACAGT
ATTAGAGGACGATATAGAGGCGTGACGCACAAAAGGCATTAGAATTATCT
TTTTATGGACATTTTAGAGATACCATACTGCGATAGTAAtcaatattttg
accattttgaaagtaaatataACCTACCAAAGCTATTAGGATAGAGATGG
GGAATATAGATAACGATGGATGGAGTCTAGGGTCGCAATTGATTGCATCT
TAAGCCCTTTTAGGtttcatttttctaaattttatctCTTGCactttttc
ttattcttttaaaatcttttttttttgtttttccttaAGAATTCTCTCAA
GTCAACTTATATGAGAGAGGTTATTTGCTTTTCTGGCAAAGCCAATGCAG
TCAAGATTATTGAATCGACAACAACAACCGTCAAACAGGCTTTGAACAAG
TTTTTTATAGCTTTGGTATAAGATGAAATCTgtgaaaaaaatacttacag
ACATGTAGCAATAATGAGCATTCCTTCTCCAACACAATCCATTTTCATGA
CTCGAATCAACTCCGCACACTTTACTTTGATCCAACTCGATTCACGTAAA
ATTTGGTCCAACTTGCTCGGGCCaccaaaaattaattcccattgttattt
ttgtttgttattATTAGTACCTCTGTAACGATACaaatcatgaaatattt
atctaattaaaaaactaTAACAAATATAGATCACTAATGAGTAATTAAGT
GTAAATAGTAATTTTTACATTCGTTctgtaaataattttttgtttatttt
gtcccttcttcttttcattattctatttatttttcactaGCCGCTTAACT
TAACTTAATTCCCATTATAAAGCATCATGATAATATTTaagttataatat
ttttttgtgcattTGTTATGCATTTATTGGAtgtaaaatgaaatgaaaat
aatttaagaCGCCAAGAAATGTGTAAATTCACGTATAACTCATTCAATTA
ACCCTCTGACTTATGATAGATACCGGCGGTGACCCAGAAAAAGGTATAGG
AGTTTAGAGAGTAACTGTGccagaaataatttgaatttttgtcgAATTCT
TTTTCCATTGTAAAGAGGAAATGCAAACTTAAACTTTGGTatataaactt
ttaaatttggttcaagttataagcttttgaaatcaaaattcacttttgaa
aaatgtaaaaaaacatca
Run BLAST on NCBI

transcript from alignment at scaffold_265:49487..54833-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055895 ID=TCONS_00055895|Name=TCONS_00055895|organism=Clytia hemisphaerica|type=transcript|length=5347bp|location=Sequence derived from alignment at scaffold_265:49487..54833- (Clytia hemisphaerica)
AGGAGATTGAAATGATGGAGAGGAACAATCAGAATAGCTCCACAGAGGCT
ATCAACGGCCATGCTACAAAACCAGTACCAAATAATGATGCTAAAAACCA
TCCCAACTCTACTCAAGATAGCCGACCCAACTCCGTCGCGTCATTGTTTA
ATGACAATGACGTCAATCAGAATAACGGCGATACTGTCAATCGTAATGGT
GTCGGTATGATCGATGACGCATCCCGACGAAACTCGGTACGGTTCTCGTC
ACGACGACTATCGAGATGTTCGTCGAGAGCAAGTTGTCGAAGTCACCGAG
GGTTAGCACCGGTCAAGAAAGAGTCACCCGTCGAAGATATTAAAGATCCA
GAGGTATTGAATTTTCTTCAAATCAATATTGTATGATGCTACAGTAGAAG
TGTTCTACTCCTAGGATGTCGAGTTTTAATTTTAAAAATTTGTAATCTAA
ACATATCCAAACTTTTCATCAAAAGGCCGGCGACTTTTTTATGTTTGAAT
AGTTTCCTATCCATTATTTGTATTTTCCATACTTTCAATCCGTAGGACGG
TGAAGGTGAGGACACAGGTGATGAAGAGGAAGAAGAAGAAGGACCAGTGG
ATTTGAGTTGGCCTGATGAAATTTTCGAACGCATCTTCTACGTCATCAAA
GCACCTTTACTCTTCGTCATGGTCTTGACTGTACCTGATGTTCGGCGACC
GGTAATTTTCCCTAAAAATTCGTCTCCATTCCTTTTAACAAGGCCCAAAA
TCTACAAGGCTCGAAAGCGACATGCACACACCGCAAGATCCTATTTGTAA
ACCCAAAAATGACTGTTGTCTCTAGAATTTAGAAGGAATAACTTTTAATT
TGCTTTACCCTTTTTTCCAACATATCATTATTTTCAATTTTTTCGTTTCC
CAGAAATTTAAAAAGTTGTTTCCACTGACGTTTACGTTGAGCATCGTATG
GATAGCCGTATTCTCCTACCTCATGTTATGGTGGGCTTCAGAAATCGGAA
GAGCTGCCGGAATTGACGTTGAGGTATAAAGTACTTCATTTTTTGTTTCT
TTAGATGTTAATTTCAACCGAATAAGAACTGAGAATAAAATAAGGGAATG
AGAGGGTGCTGAAGCTTACATATTGACCAAAGTCATCTCAAATTGAAATA
CCTTCTTTGAGCTAAAGCTAAAGGCACCAGAAATGGGCCGGGGTTAAGTA
TACCGAGGAGGTATGCAATCTGTAATTATATTTGAACTCGTCAATGTAAG
TACTATCTGAATAGTTATTGGAATTCGAGCTTGCTTGAAGCGACAATTTA
AGTCTATTTCGTGCAACCTTTTTGGCGCAAGGGTTGATGCTGTCATTTAA
TATCATTGTGTATCGTCAATTTAAAGTTACATTCTTCCTAGATCATGGGA
TTGACCTTTATAGCGGCTGGGACGAGCATTCCAGATTTAATCACCAGTGT
GGTGGTTGCACGCCAAGGACTTGGGGATATGGCAGTGTCCAGTTCTATTG
GATCGAATATCTTTGATGTTACAGTTGGGTAAGTTGATATTTTGTTGGGC
TGTTGANCATTTACTATCTTAAAGTTGTTTAAGAGAGTTTGGTGAGCTTT
AAAGAGGAGTTTGATGGGCTTTAAAGAGTATTCATCACGTGTCATTGATA
TAATCCGTGTTCCATTCGCAGGAGATTGAAATGATGGAGAGGAACAATCA
GAATAGCTCCACAGAGGCTATCAACGGCCATGCTACAAAACCAGTACCAA
ATAATGATGCTAAAAACCATCCCAACTCTACTCAAGATAGCCGACCCAAC
TCCGTCGCGTCATTGTTTAATGACAATGACGTCAATCAGAATAACGGCGA
TACTGTCAATCGTAATGGTGTCGGTATGATCGATGACGCATCCCGACGAA
ACTCGGTACGGTTCTCGTCACGACGACTATCGAGATGTTCGTCGAGAGCA
AGTTGTCGAAGTCACCGAGGGTTAGCACCGGTCAAGAAAGAGTCACCCGT
CGAAGATATTAAAGATCCAGAGGTATTGAATTTTCTTCAAATCAATATTG
TATGATGCTACAGTAGAAGTGTTCTACTCCTAGGATGTCGAGTTTTAATT
TTAAAAATTTGTAATCTAAACATATCCAAACTTTTCATCAAAAGGCCGGC
GACTTTTTTATGTTTGAATAGTTTCCTATCCATTATTTGTATTTTCCATA
CTTTCAATCCGTAGGACGGTGAAGGTGAGGACACAGGTGATGAAGAGGAA
GAAGAAGAAGGACCAGTGGATTTGAGTTGGCCTGATGAAATTTTCGAACG
CATCTTCTACGTCATCAAAGCACCTTTACTCTTCGTCATGGTCTTGACTG
TACCTGATGTTCGGCGACCGGTAATTTTCCCTAAAAATTCGTCTCCATTC
CTTTTAACAAGGCCCAGAATCTACAAGGCTCGAAAGCGACATGCACACAC
CGCAAGATCCTATTTGTAAACCCAAAAATGACTGTTGTCTCTAGAATTTA
GAAGGAATAACTTTTAATTTGCTTTACCCTTTTTTCCAACATATCATTAT
TTTCAATTTTTTCGTTTCCCAGAAATTTAAAAAGTTGTTTCCACTGACGT
TTACGTTGAGCATCGTATGGATAGCCGTATTCTCCTACCTCATGTTATGG
TGGGCTTCAGAAATCGGAAGAGCTGCCGGAATTGACGTTGAGGTATAAAG
TACTTCATTTTTTGTTTCTTTAGATGTTAATTTCAACCGAATAAGAACTG
AGAATAAAATAAGGGAATGAGAGGGTGCTGAAGCTTACATATTGACCAAA
GTCATCTCAAATTGAAATACCTTCTTTGAGCTAAAGCTAAAGGCACCAGA
AATGGGCCGGGGTTAAGTATACCGAGGAGGTATGCAATCTGTAATTATAT
TTGAACTCGTCAATGTAAGTACTATCTGAATAGTTATTGGAATTCGAGCT
TGCTTGAAGCGACAATTTAAGTCTATTTCGTGCAACCTTTTTGGCGCAAG
GGTTGATGCTGTCATTTAATATCATTGTGTATCGTCAATTTAAAGTTACA
TTCTTCCTAGATCATGGGATTGACCTTTATAGCGGCTGGGACGAGCATTC
CAGATTTAATCACCAGTGTGGTGGTTGCACGCCAAGGACTTGGGGATATG
GCAGTGTCCAGTTCTATTGGATCGAATATCTTTGATGTTACAGTTGGGTA
AGTTGATATTTTGCTAGGCTGTTGGTGTCCAGGGGGTCTATCTTTCCGTT
AACACATCTAAAACGGACTACTTTATACATACTTGTCAACTAACTGCTAG
TGAACTAACCACTCTGAACTTGGACCCAATCCTCCTCAGTTTCATGTACG
TAAATCGATGTTTATGACTACCATACCACAGCATAGAGCATTAGGTTTGG
TCATTTCCTAAAATATTTGTCATCAATATATATTGTTCGACAGTTCAAAA
TACTTTCTTTAAGGATTACTCAAGGTATCTTTTGCGTCGTTAAAATTTGA
TTCAAATGAATTTTGATGTTAACCAAACAACTTTATTTTCTTAAGGTTAC
CGTTACCTTGGTTAGCATACAGTATGTCGAAAAGTTTCAAGGACGTCGTG
GTAAAAAACTCCGGACTTTTTTGTTCCACCATCCTCTTGTTCTTAATGTT
GGTAGCTGTAGTAATCACCATCGCACTCAGTAAATGGAGGATGACCAAAA
TGTTGGGTGGAATCATGTTTGGTTTATATGTCGTGTTCATTACACTGACT
TTGTTGCTACAATTAGATGTCTTCGCATGCCCTTTCGGATGAGCTATGTA
ACAGTTAAAGGGGTGTGTTCTTTTGATTGGAGGAAATTTATTGAGAAAAG
AACTTTTATGCCATTCTCTTGGGAATTGACACCTAATTTGTCAAGTGATC
CTCGACCTCTGAGCAGAGAGTGAATGTTATGAAAGATCTACAATTCAAAT
TGCAAATCAGTTGCAAAAGTCGAAACCCGAGGAGCTGGCAAATTTGAAAC
TCACTGCAAAAATGAAGAGGGGAGACTGGATGAAAATCAAAACTGATGTA
GAAATCAAATTCGGGTGATTTTTATCAGAAAAGCAATTTAACGGGAATGC
TTTTAGGCTGACTAAAAACAAATGATTTCTTTGCAGATAAAGTCGGAACT
TATGGACTTATCTTCTCTTCGACGACAGTATTAGAGGACGATATAGAGGC
GTGACGCACAAAAGGCATTAGAATTATCTTTTTATGGACATTTTAGAGAT
ACCATACTGCGATAGTAATCAATATTTTGACCATTTTGAAAGTAAATATA
ACCTACCAAAGCTATTAGGATAGAGATGGGGAATATAGATAACGATGGAT
GGAGTCTAGGGTCGCAATTGATTGCATCTTAAGCCCTTTTAGGTTTCATT
TTTCTAAATTTTATCTCTTGCACTTTTTCTTATTCTTTTAAAATCTTTTT
TTTTTGTTTTTCCTTAAGAATTCTCTCAAGTCAACTTATATGAGAGAGGT
TATTTGCTTTTCTGGCAAAGCCAATGCAGTCAAGATTATTGAATCGACAA
CAACAACCGTCAAACAGGCTTTGAACAAGTTTTTTATAGCTTTGGTATAA
GATGAAATCTGTGAAAAAAATACTTACAGACATGTAGCAATAATGAGCAT
TCCTTCTCCAACACAATCCATTTTCATGACTCGAATCAACTCCGCACACT
TTACTTTGATCCAACTCGATTCACGTAAAATTTGGTCCAACTTGCTCGGG
CCACCAAAAATTAATTCCCATTGTTATTTTTGTTTGTTATTATTAGTACC
TCTGTAACGATACAAATCATGAAATATTTATCTAATTAAAAAACTATAAC
AAATATAGATCACTAATGAGTAATTAAGTGTAAATAGTAATTTTTACATT
CGTTCTGTAAATAATTTTTTGTTTATTTTGTCCCTTCTTCTTTTCATTAT
TCTATTTATTTTTCACTAGCCGCTTAACTTAACTTAATTCCCATTATAAA
GCATCATGATAATATTTAAGTTATAATATTTTTTTGTGCATTTGTTATGC
ATTTATTGGATGTAAAATGAAATGAAAATAATTTAAGACGCCAAGAAATG
TGTAAATTCACGTATAACTCATTCAATTAACCCTCTGACTTATGATAGAT
ACCGGCGGTGACCCAGAAAAAGGTATAGGAGTTTAGAGAGTAACTGTGCC
AGAAATAATTTGAATTTTTGTCGAATTCTTTTTCCATTGTAAAGAGGAAA
TGCAAACTTAAACTTTGGTATATAAACTTTTAAATTTGGTTCAAGTTATA
AGCTTTTGAAATCAAAATTCACTTTTGAAAAATGTAAAAAAACATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035197XLOC_035197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055895-exon-scaffold_265-1575043694:54481..54833TCONS_00055895-exon-scaffold_265-1575043694:54481..54833Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1575043694:52464..52619TCONS_00055895-exon-scaffold_265-1575043694:52464..52619Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1575043694:52142..52261TCONS_00055895-exon-scaffold_265-1575043694:52142..52261Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1575043694:51637..51773TCONS_00055895-exon-scaffold_265-1575043694:51637..51773Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1575043694:49487..51288TCONS_00055895-exon-scaffold_265-1575043694:49487..51288Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1510915933:54481..54833TCONS_00055895-exon-scaffold_265-1510915933:54481..54833Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1510915933:52464..52619TCONS_00055895-exon-scaffold_265-1510915933:52464..52619Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1510915933:52142..52261TCONS_00055895-exon-scaffold_265-1510915933:52142..52261Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1510915933:51637..51773TCONS_00055895-exon-scaffold_265-1510915933:51637..51773Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1510915933:49487..51288TCONS_00055895-exon-scaffold_265-1510915933:49487..51288Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1491911889:54481..54833TCONS_00055895-exon-scaffold_265-1491911889:54481..54833Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1491911889:52464..52619TCONS_00055895-exon-scaffold_265-1491911889:52464..52619Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1491911889:52142..52261TCONS_00055895-exon-scaffold_265-1491911889:52142..52261Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1491911889:51637..51773TCONS_00055895-exon-scaffold_265-1491911889:51637..51773Clytia hemisphaericaexon
TCONS_00055895-exon-scaffold_265-1491911889:49487..51288TCONS_00055895-exon-scaffold_265-1491911889:49487..51288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:49487..54833 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.616654	0.695451	0.734144	0.0274753	10.1886	5.82681	12.5748	11.9809	7.61832	10.166	6.42434	4.80779	3.69539	3.96411	0.667146	0.367373	1.42326	3.29639	4.86015	5.23113	4.52532	4.09841	2.16562	2.16667	3.53838	3.8563	3.04131	2.71997	0.288648	0.119852
Blast
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BLAST of TCONS_00055895 vs. Swiss-Prot (Human)
Match: NCKX2 (Sodium/potassium/calcium exchanger 2 OS=Homo sapiens GN=SLC24A2 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.062e-74
Identity = 118/200 (59.00%), Postives = 160/200 (80.00%), Query Frame = 3 
Query:  405 VDLSWPDEIFERIFYVIKAPLLFVMVLTVPDVRRPKFKKLFPLTFTLSIVWIAVFSYLMLWWASEIGRAAGIDVEIMGLTFIAAGTSIPDLITSVVVARQGLGDMAVSSSIGSNIFDVTVGLPLPWLAYSMSKSFKDVVVKNSGLFCSTILLFLMLVAVVITIALSKWRMTKMLGGIMFGLYVVFITLTLLLQLDVFACP 1004
            + L+WP E  +++ ++I  P++F + +T+PDVR+P  +K FP+TF  SI WIAVFSYLM+WWA ++G   GI  EIMGLT +AAGTSIPDLITSV+VAR+GLGDMAVSSS+GSNIFD+TVGLPLPWL Y++   F+ V V ++GLFC+ +LLF+ML+ V+++IAL KWRM K+LG IMFGLY VF+ +++LL+  +  CP
Sbjct:  459 LSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLLEDRILTCP 658
The following BLAST results are available for this feature:
BLAST of TCONS_00055895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX24.062e-7459.00Sodium/potassium/calcium exchanger 2 OS=Homo sapie... [more]
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