TCONS_00055896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055896
Unique NameTCONS_00055896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055896 ID=TCONS_00055896|Name=TCONS_00055896|organism=Clytia hemisphaerica|type=transcript|length=4189bp
GAAGAACTGGAAACgaaaaaggaagaataaaagaaaaagaagagaaagaa
aatcattATCATTATTATGACAGTTTTCTGGATGAGAGTGTGATGTTGTG
AGAGAGAATAACAAAGTATATTTTGTCGTCGCCTGCTGCTCCAGCTCGAC
TTTTTTTCGTTCTCtgttaagaaaaagtaatatattaaaaagaaaaaaaa
aactatttccaCCGCTCACTCAACAAGGcttaaaaactttgtaaaagaAA
AGCCTTTACTTGAGACGAGAGGCGATCACCCATTTTTGCTTCGGCGTGGA
TTGAATTCAAGACGTATAACCGGCGAACGTACTACTAACATCACCAAATA
AGAGAGGGAATTTATACTCGGTGAATAAATGAAATCATTCTTCTTGATAC
TGTTGTAAGGGAAAATGACTACGGATTTGAAACAATATTCAAAGACGTAT
CACCCGATGACGTCGTCTTCGTCGTCGTCGGGAAAACATCGGCGATATAA
AAGACGTCAGACGCATATATTCATCAAATTAGTTTGCATAACTGTAACTT
TGACAACTGTATTGGTTTTTTTGACGCTCTATAAATATTTAGATTCCAAG
CAAAGCAAATGGAGAAGTAACCAACAGCTGGTCAGTAAATTACACGATGA
CTCGTACCAGTCACGCAAACTATTGAATGTAAATAATGAAACTACGACAA
CGAAAGCCCCAGTTATACCACAGGGTATCGGTGACTACCCAAAGGATCTA
TTTACTGTCGAACAAAAGAAGAACGGGTGGATTGCTCTACATGTAATCGG
GGTTTTATACATGTTCTTAGCTTTGGCTATCATATGTGATGAATTTTTTG
TGCCTGCTTTACACGTTATTTCTTCTATCTTGAAGATATCAGACGACGTA
GCTGGTGCTACTTTCATGGCAGCAGGCGGTAGCGCCCCAGAACTTTTCAC
ATCCATCATTGGGGTGTTTTTCTCCGATTCACAAGTTGGATTTGGTACTA
TAGTAGGGAGTGCTGTATTCAACGTACTTTTTGTGATCGGCATGTGCGCT
ATGTGCAGCAAAACCCTTTTGAACTTAACATGGTGGCCACTGCTTAGAGA
CAGTATTTTCTACATCATAGCTTTGATTCTACTCATTATATTCTTCTCGG
ACAGTTCCATATCATGGCACGAATCATTGGGCTTGTTTCTAGTCTATATC
GCTTACGTCATCTTCATGATCAAGAACAGTAGTATAGAGATGGCTGTCAA
AGCTTATATTTCGAAGAAAACAAGGGCGTCAAGTGTGACACCCATCATCG
ATGAAAAGAACGAAAATGGTTTTCTTTCGTTACCATCGATGTTTTCGAAG
AATTCGTTTCGCAATGGTGCCATACAGCTTGTCATTCATACGCTTGACCC
CATCGCTGAAGCTGGCGTGGATGACAAGCTCCAAAAGATCAAAGATCATT
ATGACACAATTTCAACGGATCAACAGAAAGGTCTTTCTACCTCCTTGTTG
GACGAAAAAGAGTTGACGTCACCTAACCAATCAGAAACCACCATTCTTCA
TGATGATTACAATAGCCAAAGGGGACCATCAGAAACGAGTGTTGCACACT
CCAGAATTTCGCATGGCAAAGAGGAGATTGAAATGATGGAGAGGAACAAT
CAGAATAGCTCCACAGAGGCTATCAACGGCCATGCTACAAAACCAGTACC
AAATAATGATGCTAAAAACCATCCCAACTCTACTCAAGATAGCCGACCCA
ACTCCGTCGCGTCATTGTTTAATGACAATGACGTCAATCAGAATAACGGC
GATACTGTCAATCGTAATGGTGTCGGTATGATCGATGACGCATCCCGACG
AAACTCGGTACGGTTCTCGTCACGACGACTATCGAGATGTTCGTCGAGAG
CAAGTTGTCGAAGTCACCGAGGGTTAGCACCGGTCAAGAAAGAGTCACCC
GTCGAAGATATTAAAGATCCAGAGGACGGTGAAGGTGAGGACACAGGTga
tgaagaggaagaagaagaaggaccAGTGGATTTGAGTTGGCCTGATGAAA
TTTTCGAACGCATCTTCTACGTCATCAAAGCACCTTTACTCTTCGTCATG
GTCTTGACTGTACCTGATGTTCGGCGACCGaaatttaaaaagttgtttCC
ACTGACGTTTACGTTGAGCATCGTATGGATAGCCGTATTCTCCTACCTCA
TGTTATGGTGGGCTTCAGAAATCGGAAGAGCTGCCGGAATTGACGTTGAG
ATCATGGGATTGACCTTTATAGCGGCTGGGACGAGCATTCCAGATTTAAT
CACCAGTGTGGTGGTTGCACGCCAAGGACTTGGGGATATGGCAGTGTCCA
GTTCTATTGGATCGAATATCTTTGATGTTACAGTTGGGTTACCGTTACCT
TGGTTAGCATACAGTATGTCGAAAAGTTTCAAGGACGTCGTGGTAAAAAA
CTCCGGACTTTTTTGTTCCACCATCCTCTTGTTCTTAATGTTGGTAGCTG
TAGTAATCACCATCGCACTCAGTAAATGGAGGATGACCAAAATGTTGGGT
GGAATCATGTTTGGTTTATATGTCGTGTTCATTACACTGACTTTGTTGCT
ACAATTAGATGTCTTCGCATGCCCTTTCGGATGAGCTATGTAACAGTTAA
AGGGGTGTGTTCTTTTGATTGGAGGAAATTTATTGAGAAAAGAACTTTTA
TGCCATTCTCTTGGGAATTGACACCTAATTTGTCAAGTGATCCTCGACCT
CTGAGCAGAGAGTGAATGTTATGAAAGATCTACAATTCAAATTGCAAATC
AGTTGCAAAAGTCGAAACCCGAGGAGCTGGCAAATTTGAAACTCACTGCA
AAAATGAAGAGGGGAGACTGGATGAAAATCAAAACTGATGTAGAAATCAA
ATTCGGGTGATTTTTATCAGAAAAGCAATTTAACGGGAATGCTTTTAGGC
TGACTAAAAACAAATGATTTCTTTGCAGATAAAGTCGGAACTTATGGACT
TATCTTCTCTTCGACGACAGTATTAGAGGACGATATAGAGGCGTGACGCA
CAAAAGGCATTAGAATTATCTTTTTATGGACATTTTAGAGATACCATACT
GCGATAGTAAtcaatattttgaccattttgaaagtaaatataACCTACCA
AAGCTATTAGGATAGAGATGGGGAATATAGATAACGATGGATGGAGTCTA
GGGTCGCAATTGATTGCATCTTAAGCCCTTTTAGGtttcatttttctaaa
ttttatctCTTGCactttttcttattcttttaaaatcttttttttttgtt
tttccttaAGAATTCTCTCAAGTCAACTTATATGAGAGAGGTTATTTGCT
TTTCTGGCAAAGCCAATGCAGTCAAGATTATTGAATCGACAACAACAACC
GTCAAACAGGCTTTGAACAAGTTTTTTATAGCTTTGGTATAAGATGAAAT
CTgtgaaaaaaatacttacagACATGTAGCAATAATGAGCATTCCTTCTC
CAACACAATCCATTTTCATGACTCGAATCAACTCCGCACACTTTACTTTG
ATCCAACTCGATTCACGTAAAATTTGGTCCAACTTGCTCGGGCCaccaaa
aattaattcccattgttatttttgtttgttattATTAGTACCTCTGTAAC
GATACaaatcatgaaatatttatctaattaaaaaactaTAACAAATATAG
ATCACTAATGAGTAATTAAGTGTAAATAGTAATTTTTACATTCGTTctgt
aaataattttttgtttattttgtcccttcttcttttcattattctattta
tttttcactaGCCGCTTAACTTAACTTAATTCCCATTATAAAGCATCATG
ATAATATTTaagttataatatttttttgtgcattTGTTATGCATTTATTG
GAtgtaaaatgaaatgaaaataatttaagaCGCCAAGAAATGTGTAAATT
CACGTATAACTCATTCAATTAACCCTCTGACTTATGATAGATACCGGCGG
TGACCCAGAAAAAGGTATAGGAGTTTAGAGAGTAACTGTGccagaaataa
tttgaatttttgtcgAATTCTTTTTCCATTGTAAAGAGGAAATGCAAACT
TAAACTTTGGTatataaacttttaaatttggttcaagttataagcttttg
aaatcaaaattcacttttgaaaaatgtaaaaaaacatca
Run BLAST on NCBI

transcript from alignment at scaffold_265:49487..59627-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055896 ID=TCONS_00055896|Name=TCONS_00055896|organism=Clytia hemisphaerica|type=transcript|length=10141bp|location=Sequence derived from alignment at scaffold_265:49487..59627- (Clytia hemisphaerica)
GAAGAACTGGAAACGAAAAAGGAAGAATAAAAGAAAAAGAAGAGAAAGAA
AATCATTATCATTATTATGACAGTTTTCTGGATGAGAGTGTGATGTTGTG
AGAGAGAATAACAAAGTATATTTTGTCGTCGCCTGCTGCTCCAGCTCGAC
TTTTTTTCGTTCTCTGTTAAGAAAAAGTAATATATTAAAAAGAAAAAAAA
AACTATTTCCACCGCTCACTCAACAAGGCTTAAAAACTTTGTAAAAGAAA
AGCCTTTACTTGAGACGAGAGGCGATCACCCATTTTTGCTTCGGCGTGGA
TTGAATTCAAGACGTATAACCGGCGAACGTACTACTAACATCACCAAATA
AGAGAGGGAATTTATACTCGGTGAATAAATGAAATCATTCTTCTTGATAC
TGTTGTAAGGGAAAATGACTACGGATTTGAAACAATATTCAAAGACGTAT
CACCCGATGACGTCGTCTTCGTCGTCGTCGGGAAAACATCGGCGATATAA
AAGACGTCAGACGCATATATTCATCAAATTAGTTTGCATAACTGTAACTT
TGACAACTGTATTGGTTTTTTTGACGCTCTATAAATATTTAGATTCCAAG
CAAAGCAAATGGAGAAGTAACCAACAGCTGGTCAGTAAATTACACGATGA
CTCGTACCAGTCACGCAAACTATTGAATGTAAATAATGAAACTACGACAA
CGAAAGCCCCAGTTATACCACAGGGTATCGGTGACTACCCAAAGGATCTA
TTTACTGTCGAACAAAAGAAGAACGGGTGGATTGCTCTACATGTAATCGG
GGTTTTATACATGTTCTTAGCTTTGGCTATCATATGTGATGAATTTTTTG
TGCCTGCTTTACACGTTATTTCTTCTATCTTGAAGATATCAGACGACGTA
GCTGGTGCTACTTTCATGGCAGCAGGCGGTAGCGCCCCAGAACTTTTCAC
ATCCATCATTGGGGTGTTTTTCTCCGATTCACAAGTTGGATTTGGTACTA
TAGTAGGGAGTGCTGTATTCAACGTACTTTTTGTGATCGGCATGTGCGCT
ATGTGCAGCAAAACCCTTTTGAACTTAACATGGTGGCCACTGCTTAGAGA
CAGTATTTTCTACATCATAGCTTTGATTCTACTCATTATATTCTTCTCGG
ACAGTTCCATATCATGGCACGAATCATTGGGCTTGTTTCTAGTCTATATC
GCTTACGTCATCTTCATGATCAAGAACAGTAGTATAGAGATGGCTGTCAA
AGCTTATATTTCGAAGAAAACAAGGGCGTCAAGTGTGACACCCATCATCG
ATGAAAAGAACGAAAATGTAAGTGTTTTAAATATAGGAGCGCACTGTGAA
TGGAAAGGATGGAAATCACTTCGACTGGTATGATTTATTTTTGCGCTGGA
ATCGATATTTTACTTTGTTTATAGTGTGAAACAATACAGTGTCCCACACA
GCTCGAAGACTATCGACTTGTAGAGACTTATGTTAAAGGCGTTTGTTAGT
TGAAGGATCCTAAAAATTATTGGAGTTATAAAGAATACAGTAAACTGCTT
AACATCTTAGGTTCTACGTCTTTAACTCCAACGAAAATCACAAATAATAC
CTTTTTGTATTCTTTACTCATCAGGGTTTTCTTTCGTTACCATCGATGTT
TTCGAAGAATTCGTTTCGCAATGGTGCCATACAGCTTGTCATTCATACGC
TTGACCCCATCGCTGAAGGTGAGACGAAAAATTTTGTATGAACACTGTGC
CTCTCAAATAAGAATACATGCTTTTTTATAAGAACAATTTTCTAAGAACA
GGAGGCCAAAAAATGGAAAAAAACTAAGAACAGATTAGGTACAATCTGAG
CCTCAGATTTCATAAATTACAGAGAAAATACTGTTTTTAACGAATTTTAA
CAGCTTTTAAACCCATCTTCAGTTTTTATGTAAAGAAACTAAGCGCATTA
AGAACATCGCAAGAGCATTTAAGTTTGAAAATTTCAGAGAATTACAGAGA
AAGTTACGAACAGCCCAGTCTGAGCTAAAATTTACTGGTTTTTATATTTT
TAAAAGCGTGAAAATCATATAACTAATAATGTGGTCAGCAACTTCTCAGA
ACTAATTCTAAGCTTTAAATGAAGAAACGACTGGTTTTAGTAGAAAGTAT
CTGTTTCTAGAAGGATATTTGTTGCAAAAGAAAAATAGACCTAGTTTGCA
AAAGCTGTACAGTACTCTGAGGTCATTGTTGAGATTTAAATCCCTAGTCC
TCTTGAAGCTTATCTGAACTTTTCAATTCTATTTCTGACATAGCTGGCGT
GGATGACAAGCTCCAAAAGATCAAAGATCATTATGACACAATTTCAACGG
ATCAACAGAAAGGTCTTTCTACCTCCTTGTTGGACGAAAAAGAGTTGACG
TCACCTAACCAATCAGAAACCACCATTCTTCATGATGATTACAATAGCCA
AAGGGGACCATCAGAAACGAGTGTTGCACACTCCAGAATTTCGCATGGCA
AAGAGGTAATTTTTCAACAAGTCTCATTGAATAAATATTGTTGTATGGGT
TGTATACGTGAACAATTCCTTAGAGGAAGCATGAGAGATGAGGATACTTT
TATACATCATACATTCGTTTCATCTAAAGCGGTTCTCATAAATTTTTCAT
TTTGAGTTCTGGGAAGGAGACTTTAAGATCGTTTAAGTACTGCACAAAAT
ATTTGACAAAAACGGTAATTATTGTTGTGTCCTTGACCATTTACTATCTT
AAAGTTGTTTAAGAGAGTATGTTGAGCTTTAAAGAGGAGTTTGATGGGCT
TTTAAAGGGGCAATCCGTAGTCTACACAATAGACAGATCCAGGCTTTTAG
GCCTTACTCTTGGTCTATAGGCACTGCTATAGGCGGCCACTAGTGACCCC
CACCGGGAATTGCTTATTAATAGGTTTAAACATAATAGACAACATTCACA
AAAGAAGTTTATCAATAGAGATTTAAAAAAAAAGAATGTTTAAAACACAG
CTGATTGGCTTAGGTTTCGAAACTCTCTATTGTTTCATTAAAACCTCAGT
GCGCATGCGATTTATCTGGAGTATTTCAATATTCAAAACAAGAGGAGTGC
TCATAGCCCGAAGAGTAGGAGTTTTACGCTCGAAACGAAGGAAGATATGA
CGTAGCCTAGGCAATCCGCCACTACATAACACGGTTTGTTATTGTTTTTC
TAAAACTCGATTACTTTTAGGGTGCATAGAGGAATTTCCAATTGAGGCGG
AGTGATCGAGATAAAAATATCACGTGACTTTTGACGGGAAAAAATCGAAA
CAAACTTATGAGAACTGATAGAAGGCACAAAAAATTATCTTTCTTTTTCA
GAAAAAAGCTATCATTTTGTTTCAGCTGAAGGCTTCATATAAGATTTTTT
TAATTACTCCTAGTTATCTCAAATTAATTAAATCTCCCTTGGCAGTAGAA
ATTCAATATGATTTGATTTATAGGTAAAAAAGAAATGGGTTGAAAAACAA
AGAGCACAGGATTATTTTTAAAAGTATATATATAAAGATGTTATTTTTTT
ATTGAAACATACAAGTGTTTGAAATGTTACAAGAAAATCTATGAAAATTT
TAGATTATAAATTTAGAATTTTTAGTCTAAAAAAGGTTCCTCAAAGCTTT
GAAATAATAGCACCAAAAACAAAGGCTCCTGTCTTCTCTTTAAAATTATA
TGAAGTTAAGGAAAGAAAATACTTATAAAATGTCTTTGACAGGCTTTGAC
ACGTTTTGACGAAACATGGAAACCTCGAAACAATGCTTTCTTGGACAACC
ATAAACACTATATCACATAAACACTACTGAAATTATATGAAATGAACACG
AATTAATTGATAAAAATGAAATTGAATAACCTATCTACATTGGAGCACTA
AAAGATAACACTACAGCAATCCAAACAAGAAACAATGTCGCCGTTAAAAC
ATTAAAAAATATACTCCAAGCCAAGATGCAATATGTTTATCAGTTATACT
TTCACAGTATCTCTAGTCAGGAAAACAACCAAAACAATCACACAAGTTTC
AAAAGTTTAGAAAATCCACAAAGCCTCTGTCTGACCTCATGAATGTAAGA
ACCAAGCATTAAAGACTTTGTTTTGGGGTCACTCGGTAAACAAATCTCAT
ATAACTTGTTCCAGAGGTATTGTCCACATAAGAGTTTGTATTCCAAAGCA
AATATTTCTCGTACTGCCCACTTTTCTCATCAATTCTTCAACCTGAACCA
GTTTCGCATCTCAATAGAATGTTAATACCATTTTGCCAATCATTTAATGT
CCAATGTTATGGGGATGTAGCGTTTTCATCATGTCAAGCAAATGTCTCTA
AAATCTTTAAGTTGGTTGGTTTGGTATGCGGAAGAGGTAATCCATGGATA
NTGGTATTCGGAAGAGGTAATCCATGGATATCTTTGTAATCAATGATGAA
AAACTCTTGAAATTACTGATGATTACAGTTGAAGTGTTAGCCTCACATTT
CATGTAACTATTGGTCGCCAATTAGATGAAAATTGTATACTTTTTGTTCG
TCAGAAAAGAGTTATAACTTTTAAAAAGCCAAGAATGAATTTTCGTCCAT
CTTGTATTTTGATCTGTATTATTCGTGTCTTGATTACTCAAAAACATGTG
CGAAATATCAAGGTAAATCCGTGCGATTTTGTCTGAATAACTAAGACAAA
TCAAAACAAAAACAAACCGCGTTATGTAGTGGCGGATTGCCCCTTTAAGA
GAGTATTCATCACGTGTCATTGATATAATCCGTGTTCCATTCGCAGGAGA
TTGAAATGATGGAGAGGAACAATCAGAATAGCTCCACAGAGGCTATCAAC
GGCCATGCTACAAAACCAGTACCAAATAATGATGCTAAAAACCATCCCAA
CTCTACTCAAGATAGCCGACCCAACTCCGTCGCGTCATTGTTTAATGACA
ATGACGTCAATCAGAATAACGGCGATACTGTCAATCGTAATGGTGTCGGT
ATGATCGATGACGCATCCCGACGAAACTCGGTACGGTTCTCGTCACGACG
ACTATCGAGATGTTCGTCGAGAGCAAGTTGTCGAAGTCACCGAGGGTTAG
CACCGGTCAAGAAAGAGTCACCCGTCGAAGATATTAAAGATCCAGAGGTA
TTGAATTTTCTTCAAATCAATATTGTATGATGCTACAGTAGAAGTGTTCT
ACTCCTAGGATGTCGAGTTTTAATTTTAAAAATTTGTAATCTAAACATAT
CCAAACTTTTCATCAAAAGGCCGGCGACTTTTTTATGTTTGAATAGTTTC
CTATCCATTATTTGTATTTTCCATACTTTCAATCCGTAGGACGGTGAAGG
TGAGGACACAGGTGATGAAGAGGAAGAAGAAGAAGGACCAGTGGATTTGA
GTTGGCCTGATGAAATTTTCGAACGCATCTTCTACGTCATCAAAGCACCT
TTACTCTTCGTCATGGTCTTGACTGTACCTGATGTTCGGCGACCGGTAAT
TTTCCCTAAAAATTCGTCTCCATTCCTTTTAACAAGGCCCAAAATCTACA
AGGCTCGAAAGCGACATGCACACACCGCAAGATCCTATTTGTAAACCCAA
AAATGACTGTTGTCTCTAGAATTTAGAAGGAATAACTTTTAATTTGCTTT
ACCCTTTTTTCCAACATATCATTATTTTCAATTTTTTCGTTTCCCAGAAA
TTTAAAAAGTTGTTTCCACTGACGTTTACGTTGAGCATCGTATGGATAGC
CGTATTCTCCTACCTCATGTTATGGTGGGCTTCAGAAATCGGAAGAGCTG
CCGGAATTGACGTTGAGGTATAAAGTACTTCATTTTTTGTTTCTTTAGAT
GTTAATTTCAACCGAATAAGAACTGAGAATAAAATAAGGGAATGAGAGGG
TGCTGAAGCTTACATATTGACCAAAGTCATCTCAAATTGAAATACCTTCT
TTGAGCTAAAGCTAAAGGCACCAGAAATGGGCCGGGGTTAAGTATACCGA
GGAGGTATGCAATCTGTAATTATATTTGAACTCGTCAATGTAAGTACTAT
CTGAATAGTTATTGGAATTCGAGCTTGCTTGAAGCGACAATTTAAGTCTA
TTTCGTGCAACCTTTTTGGCGCAAGGGTTGATGCTGTCATTTAATATCAT
TGTGTATCGTCAATTTAAAGTTACATTCTTCCTAGATCATGGGATTGACC
TTTATAGCGGCTGGGACGAGCATTCCAGATTTAATCACCAGTGTGGTGGT
TGCACGCCAAGGACTTGGGGATATGGCAGTGTCCAGTTCTATTGGATCGA
ATATCTTTGATGTTACAGTTGGGTAAGTTGATATTTTGTTGGGCTGTTGA
NCATTTACTATCTTAAAGTTGTTTAAGAGAGTTTGGTGAGCTTTAAAGAG
GAGTTTGATGGGCTTTAAAGAGTATTCATCACGTGTCATTGATATAATCC
GTGTTCCATTCGCAGGAGATTGAAATGATGGAGAGGAACAATCAGAATAG
CTCCACAGAGGCTATCAACGGCCATGCTACAAAACCAGTACCAAATAATG
ATGCTAAAAACCATCCCAACTCTACTCAAGATAGCCGACCCAACTCCGTC
GCGTCATTGTTTAATGACAATGACGTCAATCAGAATAACGGCGATACTGT
CAATCGTAATGGTGTCGGTATGATCGATGACGCATCCCGACGAAACTCGG
TACGGTTCTCGTCACGACGACTATCGAGATGTTCGTCGAGAGCAAGTTGT
CGAAGTCACCGAGGGTTAGCACCGGTCAAGAAAGAGTCACCCGTCGAAGA
TATTAAAGATCCAGAGGTATTGAATTTTCTTCAAATCAATATTGTATGAT
GCTACAGTAGAAGTGTTCTACTCCTAGGATGTCGAGTTTTAATTTTAAAA
ATTTGTAATCTAAACATATCCAAACTTTTCATCAAAAGGCCGGCGACTTT
TTTATGTTTGAATAGTTTCCTATCCATTATTTGTATTTTCCATACTTTCA
ATCCGTAGGACGGTGAAGGTGAGGACACAGGTGATGAAGAGGAAGAAGAA
GAAGGACCAGTGGATTTGAGTTGGCCTGATGAAATTTTCGAACGCATCTT
CTACGTCATCAAAGCACCTTTACTCTTCGTCATGGTCTTGACTGTACCTG
ATGTTCGGCGACCGGTAATTTTCCCTAAAAATTCGTCTCCATTCCTTTTA
ACAAGGCCCAGAATCTACAAGGCTCGAAAGCGACATGCACACACCGCAAG
ATCCTATTTGTAAACCCAAAAATGACTGTTGTCTCTAGAATTTAGAAGGA
ATAACTTTTAATTTGCTTTACCCTTTTTTCCAACATATCATTATTTTCAA
TTTTTTCGTTTCCCAGAAATTTAAAAAGTTGTTTCCACTGACGTTTACGT
TGAGCATCGTATGGATAGCCGTATTCTCCTACCTCATGTTATGGTGGGCT
TCAGAAATCGGAAGAGCTGCCGGAATTGACGTTGAGGTATAAAGTACTTC
ATTTTTTGTTTCTTTAGATGTTAATTTCAACCGAATAAGAACTGAGAATA
AAATAAGGGAATGAGAGGGTGCTGAAGCTTACATATTGACCAAAGTCATC
TCAAATTGAAATACCTTCTTTGAGCTAAAGCTAAAGGCACCAGAAATGGG
CCGGGGTTAAGTATACCGAGGAGGTATGCAATCTGTAATTATATTTGAAC
TCGTCAATGTAAGTACTATCTGAATAGTTATTGGAATTCGAGCTTGCTTG
AAGCGACAATTTAAGTCTATTTCGTGCAACCTTTTTGGCGCAAGGGTTGA
TGCTGTCATTTAATATCATTGTGTATCGTCAATTTAAAGTTACATTCTTC
CTAGATCATGGGATTGACCTTTATAGCGGCTGGGACGAGCATTCCAGATT
TAATCACCAGTGTGGTGGTTGCACGCCAAGGACTTGGGGATATGGCAGTG
TCCAGTTCTATTGGATCGAATATCTTTGATGTTACAGTTGGGTAAGTTGA
TATTTTGCTAGGCTGTTGGTGTCCAGGGGGTCTATCTTTCCGTTAACACA
TCTAAAACGGACTACTTTATACATACTTGTCAACTAACTGCTAGTGAACT
AACCACTCTGAACTTGGACCCAATCCTCCTCAGTTTCATGTACGTAAATC
GATGTTTATGACTACCATACCACAGCATAGAGCATTAGGTTTGGTCATTT
CCTAAAATATTTGTCATCAATATATATTGTTCGACAGTTCAAAATACTTT
CTTTAAGGATTACTCAAGGTATCTTTTGCGTCGTTAAAATTTGATTCAAA
TGAATTTTGATGTTAACCAAACAACTTTATTTTCTTAAGGTTACCGTTAC
CTTGGTTAGCATACAGTATGTCGAAAAGTTTCAAGGACGTCGTGGTAAAA
AACTCCGGACTTTTTTGTTCCACCATCCTCTTGTTCTTAATGTTGGTAGC
TGTAGTAATCACCATCGCACTCAGTAAATGGAGGATGACCAAAATGTTGG
GTGGAATCATGTTTGGTTTATATGTCGTGTTCATTACACTGACTTTGTTG
CTACAATTAGATGTCTTCGCATGCCCTTTCGGATGAGCTATGTAACAGTT
AAAGGGGTGTGTTCTTTTGATTGGAGGAAATTTATTGAGAAAAGAACTTT
TATGCCATTCTCTTGGGAATTGACACCTAATTTGTCAAGTGATCCTCGAC
CTCTGAGCAGAGAGTGAATGTTATGAAAGATCTACAATTCAAATTGCAAA
TCAGTTGCAAAAGTCGAAACCCGAGGAGCTGGCAAATTTGAAACTCACTG
CAAAAATGAAGAGGGGAGACTGGATGAAAATCAAAACTGATGTAGAAATC
AAATTCGGGTGATTTTTATCAGAAAAGCAATTTAACGGGAATGCTTTTAG
GCTGACTAAAAACAAATGATTTCTTTGCAGATAAAGTCGGAACTTATGGA
CTTATCTTCTCTTCGACGACAGTATTAGAGGACGATATAGAGGCGTGACG
CACAAAAGGCATTAGAATTATCTTTTTATGGACATTTTAGAGATACCATA
CTGCGATAGTAATCAATATTTTGACCATTTTGAAAGTAAATATAACCTAC
CAAAGCTATTAGGATAGAGATGGGGAATATAGATAACGATGGATGGAGTC
TAGGGTCGCAATTGATTGCATCTTAAGCCCTTTTAGGTTTCATTTTTCTA
AATTTTATCTCTTGCACTTTTTCTTATTCTTTTAAAATCTTTTTTTTTTG
TTTTTCCTTAAGAATTCTCTCAAGTCAACTTATATGAGAGAGGTTATTTG
CTTTTCTGGCAAAGCCAATGCAGTCAAGATTATTGAATCGACAACAACAA
CCGTCAAACAGGCTTTGAACAAGTTTTTTATAGCTTTGGTATAAGATGAA
ATCTGTGAAAAAAATACTTACAGACATGTAGCAATAATGAGCATTCCTTC
TCCAACACAATCCATTTTCATGACTCGAATCAACTCCGCACACTTTACTT
TGATCCAACTCGATTCACGTAAAATTTGGTCCAACTTGCTCGGGCCACCA
AAAATTAATTCCCATTGTTATTTTTGTTTGTTATTATTAGTACCTCTGTA
ACGATACAAATCATGAAATATTTATCTAATTAAAAAACTATAACAAATAT
AGATCACTAATGAGTAATTAAGTGTAAATAGTAATTTTTACATTCGTTCT
GTAAATAATTTTTTGTTTATTTTGTCCCTTCTTCTTTTCATTATTCTATT
TATTTTTCACTAGCCGCTTAACTTAACTTAATTCCCATTATAAAGCATCA
TGATAATATTTAAGTTATAATATTTTTTTGTGCATTTGTTATGCATTTAT
TGGATGTAAAATGAAATGAAAATAATTTAAGACGCCAAGAAATGTGTAAA
TTCACGTATAACTCATTCAATTAACCCTCTGACTTATGATAGATACCGGC
GGTGACCCAGAAAAAGGTATAGGAGTTTAGAGAGTAACTGTGCCAGAAAT
AATTTGAATTTTTGTCGAATTCTTTTTCCATTGTAAAGAGGAAATGCAAA
CTTAAACTTTGGTATATAAACTTTTAAATTTGGTTCAAGTTATAAGCTTT
TGAAATCAAAATTCACTTTTGAAAAATGTAAAAAAACATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035197XLOC_035197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055896-exon-scaffold_265-1575043694:58311..59627TCONS_00055896-exon-scaffold_265-1575043694:58311..59627Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1575043694:57910..58003TCONS_00055896-exon-scaffold_265-1575043694:57910..58003Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1575043694:57123..57334TCONS_00055896-exon-scaffold_265-1575043694:57123..57334Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1575043694:54481..54831TCONS_00055896-exon-scaffold_265-1575043694:54481..54831Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1575043694:54133..54288TCONS_00055896-exon-scaffold_265-1575043694:54133..54288Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1575043694:52142..52261TCONS_00055896-exon-scaffold_265-1575043694:52142..52261Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1575043694:51637..51773TCONS_00055896-exon-scaffold_265-1575043694:51637..51773Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1575043694:49487..51288TCONS_00055896-exon-scaffold_265-1575043694:49487..51288Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:58311..59627TCONS_00055896-exon-scaffold_265-1510915933:58311..59627Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:57910..58003TCONS_00055896-exon-scaffold_265-1510915933:57910..58003Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:57123..57334TCONS_00055896-exon-scaffold_265-1510915933:57123..57334Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:54481..54831TCONS_00055896-exon-scaffold_265-1510915933:54481..54831Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:54133..54288TCONS_00055896-exon-scaffold_265-1510915933:54133..54288Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:52142..52261TCONS_00055896-exon-scaffold_265-1510915933:52142..52261Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:51637..51773TCONS_00055896-exon-scaffold_265-1510915933:51637..51773Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1510915933:49487..51288TCONS_00055896-exon-scaffold_265-1510915933:49487..51288Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:58311..59627TCONS_00055896-exon-scaffold_265-1491911889:58311..59627Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:57910..58003TCONS_00055896-exon-scaffold_265-1491911889:57910..58003Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:57123..57334TCONS_00055896-exon-scaffold_265-1491911889:57123..57334Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:54481..54831TCONS_00055896-exon-scaffold_265-1491911889:54481..54831Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:54133..54288TCONS_00055896-exon-scaffold_265-1491911889:54133..54288Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:52142..52261TCONS_00055896-exon-scaffold_265-1491911889:52142..52261Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:51637..51773TCONS_00055896-exon-scaffold_265-1491911889:51637..51773Clytia hemisphaericaexon
TCONS_00055896-exon-scaffold_265-1491911889:49487..51288TCONS_00055896-exon-scaffold_265-1491911889:49487..51288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:49487..59627 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.428276	0.289091	0	0.0682606	2.99125	2.61033	4.44572	5.3957	3.29309	4.54199	2.43525	2.81761	1.14735	1.08236	0.357561	0.544703	1.89511	1.71706	1.29222	1.7674	1.80817	2.40723	0.492299	0.949723	0.737848	1.01801	0.871063	0.491019	0	0.079846
Blast
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BLAST of TCONS_00055896 vs. Swiss-Prot (Human)
Match: NCKX2 (Sodium/potassium/calcium exchanger 2 OS=Homo sapiens GN=SLC24A2 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 2.490e-73
Identity = 118/200 (59.00%), Postives = 160/200 (80.00%), Query Frame = 1 
Query: 2026 VDLSWPDEIFERIFYVIKAPLLFVMVLTVPDVRRPKFKKLFPLTFTLSIVWIAVFSYLMLWWASEIGRAAGIDVEIMGLTFIAAGTSIPDLITSVVVARQGLGDMAVSSSIGSNIFDVTVGLPLPWLAYSMSKSFKDVVVKNSGLFCSTILLFLMLVAVVITIALSKWRMTKMLGGIMFGLYVVFITLTLLLQLDVFACP 2625
            + L+WP E  +++ ++I  P++F + +T+PDVR+P  +K FP+TF  SI WIAVFSYLM+WWA ++G   GI  EIMGLT +AAGTSIPDLITSV+VAR+GLGDMAVSSS+GSNIFD+TVGLPLPWL Y++   F+ V V ++GLFC+ +LLF+ML+ V+++IAL KWRM K+LG IMFGLY VF+ +++LL+  +  CP
Sbjct:  459 LSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLLEDRILTCP 658

HSP 2 Score: 244.202 bits (622), Expect = 7.598e-68
Identity = 164/397 (41.31%), Postives = 231/397 (58.19%), Query Frame = 1 
Query:  655 YQSRKLLNVNNETT--TTKAPVIPQG---------IGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALHVISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSAVFNVLFVIGMCAMCSKTLLNLTWWPLLRDXXXXXXXXXXXXXXXXXXXXXWHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTP-------IIDEKNENGFLSLPSMFSKNS--------FRNGAIQLVIHTLDPIAEA-GVDDKLQKIKDHYDTISTDQQKGLSTSLLDEKELTSPNQSETTILHDDYNSQRGPSETSVAHSRISHGKE-EIEMMERNNQNSSTEAINGHATKPVPNNDAKNHPNSTQDSRPNSVA 1761
            Y  R LL++N++    T + P+  +G          GDYPKD+F++E+++ G I LHVIG++YMF+ALAI+CDEFFVP+L VI+  L ISDDVAGATFMAAGGSAPELFTS+IGVF + S VG GTIVGSAVFN+LFVIGMCA+ S+ +LNLTWWPL RD  FYI+ LI+LIIFF D+ I W ESL L   Y  YV+FM  N  +E  VK  I++        P          +K+E    + P +    S         RN   QL+IHTLDP+AE  G   KL+    +YDT++ + +     S+L        ++      H D N ++  +   V    + +    ++EM   ++ +   +  NG+ +  +   +A+      ++ +P S+A
Sbjct:   82 YHQRTLLDLNDKILDYTPQPPLSKEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMKFNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNSLMRNSIFQLMIHTLDPLAEELGSYGKLK----YYDTMTEEGRFREKASIL--------HKIAKKKCHVDENERQNGAANHVEKIELPNSTSTDVEMTPSSDASEPVQ--NGNLSHNIEGAEAQT--ADEEEDQPLSLA 462
The following BLAST results are available for this feature:
BLAST of TCONS_00055896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX22.490e-7359.00Sodium/potassium/calcium exchanger 2 OS=Homo sapie... [more]
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