TCONS_00055903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055903
Unique NameTCONS_00055903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055903 ID=TCONS_00055903|Name=TCONS_00055903|organism=Clytia hemisphaerica|type=transcript|length=974bp
agcctcatgttttaTAAAAGTGTGTTTTTTCCGTAGGTGAACGAATTTCA
TTAGCTATCACGTTGCTATTGGCAATGACAGTTTTCATGTTGGTCGTCGC
AGATATCATTCCGGCCACCAGTGACGTCATTCCTTTGGTTGGGATTTTCT
TCAGTGCTTCGATGATTGAGATGGTGATCATGATCGTTGTGTTGTGTTAT
ATTATGCGATTGTATCATAAAGGTCCCAATGATCCTCCCATGCCTCTTTG
GATGAAAAAGTATATCTATGATTGGCTTTCATACAAGATGAGAGTACGTA
AACAAAGTAGGAAACAAAGTCTTCAACGAGGATCGTCCCGCAAAGACTCA
TACAATTACCATAAGCTCAACGCTCAAAATGATGAGGAGGACATAGAACA
TGTTAAATGGAACAAAAGATCGTTGAATAACATCATCTTTAACAAATTGA
ACAATTACCAACATAATAACCAGAACAACCAGCATCAGGAAGAGCGATTG
TCACCACTCCTTTTTTACAATCACTTTTCAAACTTCCAACCTTCGACTCT
TGATAGAAGACAAACTGCACTCAATCCAATGAAAGTGAGAAGAACTGGCC
GCCACAACCATCAACCACCGCCATTTGGGGTCACTAATCTGGTGACACGC
CCAACAGAATCACAAATCATGCTTAGCAAAATGGAAGCGTTGCTGAAACA
CATTCGACAAGTGGAATATCAGAACAACATACGCAATCAATGGAGAACGG
TGGCAAAAACATTGGATTATTGTTTGTTCATCTTTTTCTTCATCACATAC
CTAACCACATTTATCACGTGCTCACTGAAGTCGCCAGGCTATGTTTGGTG
ATGTAGACAAGAGATATCATCTACCCCTATGCTGTCCATATCATAGCAGA
TTTTTGCCACGGATAGTCATGTGTTATACATTTGAAGCAAATGTGTATTC
TTTCCGATGGAAAATAAATACCAT
Run BLAST on NCBI

protein sequence of TCONS_00055903-protein

>TCONS_00055903-protein ID=TCONS_00055903-protein|Name=TCONS_00055903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MTVFMLVVADIIPATSDVIPLVGIFFSASMIEMVIMIVVLCYIMRLYHKG
PNDPPMPLWMKKYIYDWLSYKMRVRKQSRKQSLQRGSSRKDSYNYHKLNA
QNDEEDIEHVKWNKRSLNNIIFNKLNNYQHNNQNNQHQEERLSPLLFYNH
FSNFQPSTLDRRQTALNPMKVRRTGRHNHQPPPFGVTNLVTRPTESQIML
SKMEALLKHIRQVEYQNNIRNQWRTVAKTLDYCLFIFFFITYLTTFITCS
LKSPGYVW
Run BLAST on NCBI

transcript from alignment at scaffold_265:92228..104426-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055903 ID=TCONS_00055903|Name=TCONS_00055903|organism=Clytia hemisphaerica|type=transcript|length=12199bp|location=Sequence derived from alignment at scaffold_265:92228..104426- (Clytia hemisphaerica)
AGCCTCATGTTTTATAAAAGTGTGTTTTTTCCGTAGGTGAACGAATTTCA
TTAGCTATCACGTTGCTATTGGCAATGACAGTTTTCATGTTGGTCGTCGC
AGATATCATTCCGGCCACCAGTGACGTCATTCCTTTGGTTGGGATTTTCT
TCAGTGCTTCGATGATTGAGATGGTGATCATGATCGTTGTGTTGTGTTAT
ATTATGCGATTGTATCATAAAGGTCCCAATGATCCTCCCATGCCTCTTTG
GATGAAAAAGTAAGTCAATCAAAATTAAGTTTTTCCCAAACAGGGAAAAA
TACCAGAAAAACATTAAACATCGAACATTGTAAATAAATAGCATTGGAAT
GTTACGTAGTTAAAAGTGAATTTTGCTGCCGACGGCGTTTTACCGGTAAC
GTAATCATTCTTTTTTCCCACAGAATATATTTTCTTTTGGAAAATACACC
TCTGTCTCAATTTGGGTGAAAGTAATAAAGCCTGTTAAATACGAAGCGCA
AAGGCCAATAATCTGGACGGAAAAGCCTGTTTTAATAGGTGGGTATTTAC
TTACATCGGGAAAATAATAAATTGTAGTTTTCAAAGTTCTTTTTTAATTT
TAAAGCATACTTCTCACTGGAACCAATCTTTATATATACACAAATAGAAT
CTTGTCATTTTTCCTATCACGTAGGTATATTTACGACAGTCTCTCATACA
AACTCCATATTCGACGTCGCAAAGAAGAAGAAGGCGTAGAGGATACAGGG
AACAATGAAGCACATCCTTTCATCCCAAACAAACAGCAAGAACGTCAAAA
CGAGGCCATCTTTAACAATGGAACTGTAACTGTCATCAACCGTCTCAAAC
CGATGACACAAGCTGAAAAATGGAATAATCACATGACGTCATTATCCTTG
TTAGCCGCCAATCGTCAACCAAACAATAGGCTGAGTGGTGCACCAACAGC
CGCCGGCCACTTCATGAACAACACCATTCTTCAACATCCTGAACAACCAG
CAAGTGAAGCGCAAATCGTGATCAACAAATTGAACATTTTAGTCAACAAA
TTAAAAGACATGGATGCTGAAGATGACGTCACTGCCGAATGGCGTACCGT
TGCCATGACTCTTGATCGCTTATTGGTTATTTTCTTCTTCGTTGTTTACT
TGGTTACCATCCTGGCTTGCTTCTTAAGATCACCAGGTTATGTTTCATGA
GAAGAATTTTTGTTAAGAATTTTTAAATATACATTTTATCAAAATTGGAT
CATGGTGGAAGCTAGGTCTGCCGGATGTGGGCGTGTATTTCGCCCAAATA
TTGAAATTCGGCTATAATCAAATCGAAAACTGCAGATAAAAGCCAAAAAT
TAAAAAGAGCCTTGTCGGGCCATTTTCCCGAAATCTAGCCTTTTCAAGAA
CGAATTTTTTTTATATATTTTGCAACCTTTAAGAATATATCGATTTAAGT
CATGATTGTAATTTTAAATTTCAGTTTTTATAGAATAAAAATGTTTTCAT
ATTATTTTAATAGACCTCTTTGGAAATAAGCCCTGCATCATCAAATTATT
TGAAAAAGCTTTTAATCGGGAAATATTTCTAAATTTAAATGTAGCATATA
GATCTTATCATAAGCTTCTCTAAATTTTAACTTGTTGATAAATAACCCGC
AAAGTAAGTACGGGATACACATTGTCCGTTTTATTCCACTAAAACCGTCC
CAGTCCTTTTTTCGCACATATAGACAATAGAAAAATCCATCAAAAAAGGA
TTGGGACGGTTTTAGTGGGATAAAGCGGACAAAGAAATGCCCGCGCGACT
ACGGTCGAAAAGGTGTATTTGGCCATAGGAGACTGGGGAGACTTCAACCT
CCCCACTTTCGAGAAAATGAGTTTTTTTCCTCTAATTCCTAGCAAATTTG
ATCTCATATTGAGCCTTCAGCCTACCTACTTTAACTGTTGTTCCACCGGG
CCTATGTGACTGACCAAAGAGGTTCATTTTTGCAAGAATTTGAGTTTGGA
CTTTTTATGCAATTTTCCACTGACTGGGATTTTCAATAGCACTATATATA
TACATTTTAAAACATGTAGCACATGAAGATGAAGTCAAATTATTATTAAC
AATAAATTCAGCTGATAAGCTTTGGGATATTGCTTAAGACATCGATATGA
CGAGTATCACAAGAATGGCAATCAAGGGGGTCGATCACGCATTTAAAAAA
GGTATTGCTGACAGTCAGCACGAATAAAACTCTACTATTTGATTTCACAG
GTTGCATTTCAAATAAAGCCCAAACTCACTGAATCAAAATTCAACCTGCA
ATCTACACGCTTTTTATTTCATAAGAATACACTTTATAAGAATTTCCATG
ATGGAAATGGCTAAAAAATTCAAAGTAAGAATAAGAATATCACCATCATG
GAATTTTGCTACTCAAGCTAAGAATGCCATTTTTTGAGCATTTTCAATTA
TAAATTGTCAATTACACCCAAGTAAGGCTCCCTCTTTCACAAAATGTCAT
TTTATGCTTGTGACGTATGTACTAAATGTTAAATCTACTCTGATTAGGAT
CCTAACCCAAGAATACTGTAAGAATATTTTAGGATGATTTTCCCCAAAAA
GTTAAGAATATCCATGATGAAATGGATTTACATATAAAAAAAGCGTGTAG
TTAGTGAAAAGCACAATAAAAAATCTCGTCTCAAGAAAAGATATAGCATG
TTCGACAATTAAAACGGACAAAATTTCCCATGAGAGAAATGTATGAATAA
GAGCATTAGAAAAAGCAATATCGAAAGCAATATCGCAAATAACTTTCTTG
GACAATCCTTTTAAAAGAATGAAATAAATAACATAAGAGTGTAGTGAACA
GACGTTATCAACCGCATGGATACAACTAGTTTTGGCTTGAATGTTTTCAA
CACAAAATGGTATTCTAACTTGTTTCATTGGGCAGAGAATACATAGTGTC
ATTGAAGTTGTTGCCTTGGTAACAAACTAAGCAGCGAGGGAAAATAAGTT
ATATATATAGTCATTATTTTGTTCTATTCATTAAAAATTTATCAAGTGAT
ATATCAAAAAAAGGAAGAAATAGAAAAAGAAGAATAGTGAATAATTATTT
TTTTTTGAAGTGAAGAAAAGTTAACTGTCGTCAAATATTGATGAGCGACC
CCAACAAACAGGGAACACGAAAAAAAATATCCCTTGGTAATCTATGTTAT
ATTTGTGATGAATAATATATAACAATAACTTATGTAGTGTACAACATTCA
AGACAGGGAATAATGTTTTACTTCAACATTATCATGATAAAATAGTCTAA
GGTAATATTTATTATTGTTAACCGGTTACTTTTTCGAAGCGGGCTACTAG
TTTCATTTTATTGGAAGTAAAAAAAAAGAAGTGCATATTATGGGAAATTT
TGTCTGTTTGAGGGAATAATTACTTTGCTTTTTATTGATGGAAGTGGATG
AAAAATTATAAAATTCAAGCAGTTATCTGATTACTTTAATCATTTTTACA
TATCGATGTTATTAAAAAAATTCTTCCTTGGTTTTTGAGTTTTTGAGGGA
CTGTATAATAGATAATATGTTCAAGGAGAAAGATTTGTTAAGAAACAGAT
GAAAATAAGAACGAAGAGTTTGATTTGATCAAAAGGGAATAAAATATGTT
GGAGCATATATATTTTCGTATATAATTTTCTCCTCGTCAAAAAGTTGAGG
TGCTCTACAACGCTCTATGAGGTTTGAAAGACTTGTATTTGGTTAATCTT
TCTTAGGGAGTGGTCAGAAAGTATCTAATAGGGTGGGGTGGAAGATATTT
CCAAGAATTCTAACCAAAATTTGCACCCTCTTAATATCCTCAGAAAATAT
ATCCCCCTAACCAGTCAAGATATTTTCGGCACCCTCTCTGAGTATAGAGC
CCCCCGGGGGGGTACTTAGGCAAATGGAGGGTACGGCATGTGCCGCCCTT
AAGGGTACCTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATTTTGGGCATTACCATTTTGCATCATTGTGCCA
AAAATCAAAAAAAACTAATGAGCCAATCCTGAGAAAAGCTGGTAACAGAC
GGACGGACGAACGGACGACGAACAGACGAACGAACGGACGGACATCGGTT
AATTTATAGGACCTCTACCCCACCGGGGTAGGTCCAAAAATTTTGCAATT
ATATTTAGACTGGAGTCGTTTATAATGCATGTAATACTAATAATAAACAC
AAATAATGATACGGGATTTAGTTTGTATAAACGACTGGAAGAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGTA
GTTGGACTTTCGATATCGCCCGTTTAGACTTGAGAAATCACTCAAGTGGG
GCAGATATTAGTAAGGAATATTAAATTACAAGCATAATTGTGATATTACT
TAAGTGACCTGTCAATTGTAACAGGAGGTATGATTGTATGCTTTTGAAAT
TAAACGGCTAAAATAGGTCTTAGGATCGGTTGAAATATGAGAAGATTTGG
TATCCGTATTTCAAGTTATTCAGTTAAGACCTCAATGTCAAAAAAATTCG
ACGTTAAAAGTCAAAGAAGCTGTTATTTTCAGACCTCAGATTGTTGTGCA
AAACGNTTCGACGTTAAAAGTCAAAGAAGCTGTTATTTTCAGACCTCAGA
TTGTTGTGCAAAACAATAATATTTTCAATCAATCAAAAAAAGCCTAACTT
AGGTTTCATTTTTATCGAGAAAAAGTGGAGAAAAGAAGGCTACAAAAATG
AATAAAATTTAAAAACAGGTCATTGCATGTTTGTTTTTGTTCGGTTTCAG
GCAAATTTACCAGAAATTCCGAATGGAGATTGGATTCAGCTTGTTGCGTG
CGAAACGTGTTAAAGTATCCTTGTTGTAAAGAGAAATATCCTGACGTCAC
TTTCACCATCGTCATTGCAAGAAGATCTTTGTTTTATTTGTGTAATTTGA
TTTTTCCCATGACCGTCATTGGAATGTTGACCATTCTATCTTTCTTACTG
CCAGCAGAATCGGGTAAGTTAAGAGCATCAGATTATTTGCCTGGCGAATA
GATCTTTCTATGGTACAGATAAAATGGCGTTTCAGGCCTTAATAAAGAAA
GACTTATCTTAACTTTGCGCATCAACAAAGATTAAAATGACTTTCTTTTA
AAATGATTTACAGCGGATAAAAGTGAATAAACCAAGACTGCATTTTTAAA
ATCTGCAGACCAACTCGATGTTTTTCGGACAAACAGACTGTTGATTCAAT
TTATTATTGATTAAGCCGCCTTTTTTCTATGATTTCAAGGCTTCTTTTAT
CGATTCGTAATCTAATAATCTAATGGCCATTAGTTTTCACGCACAAAAGA
TGTGATAAAGTGAGAATTCATGATCTAGAAAATGGCTGCGTTTAGACCAG
CCTGGCATTTGTAATTGCTTGCAGTATTCTTTTGAATTCTATTGTTCCGC
GCGAATGTTCGGTTTGTCAAATGCCTAATGATGCCAGCGTGTTGGCATTT
TGTTGGCATTTGAAATGCCATTTTGAGCAAAGGAATCCCCTTTTCTGGCA
TTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAACTCCAGTAG
TTCCTGAGTTCTGGCAGGTGGTCAACGTGTATTTTACAGACCGGTCTGCA
AAGTACCAAATATTCATGAGAAAGAACTTTTTCTGTTATTAGTGTCTTTT
AATTGACAAATCAGCCTTCAAGAACGAATTCCAGTCAAATCGAACGAATC
AATCAGTCAATACATGATTTGGTCAAGTTTACGCTCTGGTCTGTAACTAG
ACAGGTGGCCGAACCAAAATTTTGCAAATCATCTTTAATTATCCATATCT
ACCACTGGTCAAAATTTCAAGGTCACAGTATTTGTCAATCTTGAGATTTT
GAGATGCTTCCCCTAGTAAAAAAATAGGAGGATGCTCGAAGATGCTTCAT
TCCGCAGTTACAATTCTACCTAATGTTTATAATCACTAGATTTCTTTACA
AAGGTATATCTATGATTGGCTTTCATACAAGATGAGAGTACGTAAACAAA
GTAGGAAACAAAGTCTTCAACGAGGATCGTCCCGCAAAGACTCATACAAT
TACCATAAGCTCAACGCTCAAAATGATGAGGAGGACATAGAACATGTTAA
ATGGAACAAAAGATCGTTGAATAACATCATCTTTAACAAATTGAACAATT
ACCAACATAATAACCAGAACAACCAGCATCAGGAAGAGCGATTGTCACCA
CTCCTTTTTTACAATCACTTTTCAAACTTCCAACCTTCGACTCTTGATAG
AAGACAAACTGCACTCAATCCAATGAAAGGTAAAGTTTACCTCTTTTACC
CAACTAATAACAAAGTTTACCTCTTTTACCCAACTAATAACAAAGCCCTT
TGGATGGTCCAACTTTACTTTGTTTTATGATGAACTATATAGATGAACCC
ATAGTCTGCGGCCGGGTCATAAGATTATTATTTTTCATCCGGCTCTTTTC
CGGAAACACTACATTTTTATATTTTCGCCTCAATCGAAAGTTTTTTTAAG
CAATTTCCTGGCATGACGACTTTTTTTCTTTTTGATATTTTTGGAAATTA
TGAATGCCAATTATGCATCCAAAGGGCTTCTGATGCGTTCAGCTTATCTA
CTCCTCGGCGGGTGCGACGCCGGGTGACGGCTAGTATAACACTATTAAGG
ATTTTTTTCTTTGGCTAAAGAGAGAAAGAGAAAGAAAAGGTCAAGTGAAC
CACGGAAAAAAGTTGATGTTTAAACACAAAAGAAAATCTTTATCCAGGGG
GATCCCACTCTCTGAGTATAAGTCCAAAATCATTATGATATAATAAAAGC
CAAATTCGCTCTGTAAAAGCATGGATTTATCATAGAACTCTGGATACACA
ACGAGCTGGTATTTCATCGATTTCTCATGTTCTAGCCTTGTCCGCAGTAA
TGACATTATTGTTCATCCTCCTCCATTCACTATTAATTTTTCGTAAATTT
CTTTATTGCATTTTTCATCAAAACACAGCTATACAATTCCCAAATGAGAC
TTAAAGATCTCTCAAGAGAGTCAAATGCATCAAATTGATTGCTAATGATA
TGTCGTTATGACGAAGAGAAAGATGCGACAAACATGCTATGTATAAGAAA
TTGAATGTTGACACCAGAAAATTTCAAACTTCCACCTCGCCGAAACCACC
GTGCCACTGCGTGCCTCCAAAAGATTTTCATATCACTATGAAGCCAAGAT
ACTGNCAATCACTTTTCAAACTTCCGACCTTCGACTCTCGATAGAAGACA
AACTGCACTCAATCCAATGGAAGGTAAAGTTTACATCCTTTACCTAACTA
GTAACACTATTAAGGATTTTTTTCTTTGGCTAAAGAGAGAAAGAGAAAGA
AAAAGTCAAGTGAACCACGGAAAAAAGTTGATGTTTAAACACAAAAGAAA
ATCTTTATCCAGGGGGATCCCATTCCCTGAGTATAAGTCCAAAATCATTA
TGATATAATAAAAGCCAAATTCGCTCTGTAAAAGTAATAACTTAAAGGTA
CTCGTTTCAGTGAGAAGAACTGGCCGCCACAACCATCAACCACCGCCATT
TGGGGTCACTAATCTGGTGACACGCCCAACAGAATCACAAATCATGCTTA
GCAAAATGGAAGCGTTGCTGAAACACATTCGACAAGTGGAATATCAGAAC
AACATACGCAATCAATGGAGAACGGTGGCAAAAACATTGGATTATTGTTT
GTTCATCTTTTTCTTCATCACATACCTAACCACATTTATCACGTGCTCAC
TGAAGTCGCCAGGCTATGTTTGGTGATGTAGACAAGAGATATCATCTACC
CCTATGCTGTCCATATCATAGCAGATTTTTGCCACGGATAGTCATGTGTT
ATACATTTGAAGCAAATGTGTATTCTTTCCGATGGAAAATAAATACCAT

Coding sequence (CDS) from alignment at scaffold_265:92228..104426-

>TCONS_00055903 ID=TCONS_00055903|Name=TCONS_00055903|organism=Clytia hemisphaerica|type=CDS|length=2331bp|location=Sequence derived from alignment at scaffold_265:92228..104426- (Clytia hemisphaerica)
TGAGAAGAACTGGCCGCCACAACCATCAACCACCGCCATTTGGGGTCACT
AATCTGGTGACACGCCCAACAGAATCACAAATCATGCTTAGCAAAATGGA
AGCGTTGCTGAAACACATTCGACAAGTGGAATATCAGAACAACATACGCA
ATCAATGGAGAACGGTGGCAAAAACATTGGATTATTGTTTGTTCATCTTT
TTCTTCATCACATACCTAACCACATTTATCACGTGCTCACTGAAGTCGCC
AGGCTATGTTTGGTGAGTATATCTATGATTGGCTTTCATACAAGATGAGA
GTACGTAAACAAAGTAGGAAACAAAGTCTTCAACGAGGATCGTCCCGCAA
AGACTCATACAATTACCATAAGCTCAACGCTCAAAATGATGAGGAGGACA
TAGAACATGTTAAATGGAACAAAAGATCGTTGAATAACATCATCTTTAAC
AAATTGAACAATTACCAACATAATAACCAGAACAACCAGCATCAGGAAGA
GCGATTGTCACCACTCCTTTTTTACAATCACTTTTCAAACTTCCAACCTT
CGACTCTTGATAGAAGACAAACTGCACTCAATCCAATGAAAGATGACAGT
TTTCATGTTGGTCGTCGCAGATATCATTCCGGCCACCAGTGACGTCATTC
CTTTGGTTGGGATTTTCTTCAGTGCTTCGATGATTGAGATGGTGATCATG
ATCGTTGTGTTGTGTTATATTATGCGATTGTATCATAAAGGTCCCAATGA
TCCTCCCATGCCTCTTTGGATGAAAAATGAGAAGAACTGGCCGCCACAAC
CATCAACCACCGCCATTTGGGGTCACTAATCTGGTGACACGCCCAACAGA
ATCACAAATCATGCTTAGCAAAATGGAAGCGTTGCTGAAACACATTCGAC
AAGTGGAATATCAGAACAACATACGCAATCAATGGAGAACGGTGGCAAAA
ACATTGGATTATTGTTTGTTCATCTTTTTCTTCATCACATACCTAACCAC
ATTTATCACGTGCTCACTGAAGTCGCCAGGCTATGTTTGGTGAGTATATC
TATGATTGGCTTTCATACAAGATGAGAGTACGTAAACAAAGTAGGAAACA
AAGTCTTCAACGAGGATCGTCCCGCAAAGACTCATACAATTACCATAAGC
TCAACGCTCAAAATGATGAGGAGGACATAGAACATGTTAAATGGAACAAA
AGATCGTTGAATAACATCATCTTTAACAAATTGAACAATTACCAACATAA
TAACCAGAACAACCAGCATCAGGAAGAGCGATTGTCACCACTCCTTTTTT
ACAATCACTTTTCAAACTTCCAACCTTCGACTCTTGATAGAAGACAAACT
GCACTCAATCCAATGAAAGATGACAGTTTTCATGTTGGTCGTCGCAGATA
TCATTCCGGCCACCAGTGACGTCATTCCTTTGGTTGGGATTTTCTTCAGT
GCTTCGATGATTGAGATGGTGATCATGATCGTTGTGTTGTGTTATATTAT
GCGATTGTATCATAAAGGTCCCAATGATCCTCCCATGCCTCTTTGGATGA
AAAATGAGAAGAACTGGCCGCCACAACCATCAACCACCGCCATTTGGGGT
CACTAATCTGGTGACACGCCCAACAGAATCACAAATCATGCTTAGCAAAA
TGGAAGCGTTGCTGAAACACATTCGACAAGTGGAATATCAGAACAACATA
CGCAATCAATGGAGAACGGTGGCAAAAACATTGGATTATTGTTTGTTCAT
CTTTTTCTTCATCACATACCTAACCACATTTATCACGTGCTCACTGAAGT
CGCCAGGCTATGTTTGGTGAGTATATCTATGATTGGCTTTCATACAAGAT
GAGAGTACGTAAACAAAGTAGGAAACAAAGTCTTCAACGAGGATCGTCCC
GCAAAGACTCATACAATTACCATAAGCTCAACGCTCAAAATGATGAGGAG
GACATAGAACATGTTAAATGGAACAAAAGATCGTTGAATAACATCATCTT
TAACAAATTGAACAATTACCAACATAATAACCAGAACAACCAGCATCAGG
AAGAGCGATTGTCACCACTCCTTTTTTACAATCACTTTTCAAACTTCCAA
CCTTCGACTCTTGATAGAAGACAAACTGCACTCAATCCAATGAAAGATGA
CAGTTTTCATGTTGGTCGTCGCAGATATCATTCCGGCCACCAGTGACGTC
ATTCCTTTGGTTGGGATTTTCTTCAGTGCTTCGATGATTGAGATGGTGAT
CATGATCGTTGTGTTGTGTTATATTATGCGATTGTATCATAAAGGTCCCA
ATGATCCTCCCATGCCTCTTTGGATGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035198XLOC_035198Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055903-proteinTCONS_00055903-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055903-exon-scaffold_265-1575043694:104168..104426TCONS_00055903-exon-scaffold_265-1575043694:104168..104426Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1575043694:93848..94173TCONS_00055903-exon-scaffold_265-1575043694:93848..94173Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1575043694:92228..92616TCONS_00055903-exon-scaffold_265-1575043694:92228..92616Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1510915933:104168..104426TCONS_00055903-exon-scaffold_265-1510915933:104168..104426Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1510915933:93848..94173TCONS_00055903-exon-scaffold_265-1510915933:93848..94173Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1510915933:92228..92616TCONS_00055903-exon-scaffold_265-1510915933:92228..92616Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1491911889:104168..104426TCONS_00055903-exon-scaffold_265-1491911889:104168..104426Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1491911889:93848..94173TCONS_00055903-exon-scaffold_265-1491911889:93848..94173Clytia hemisphaericaexon
TCONS_00055903-exon-scaffold_265-1491911889:92228..92616TCONS_00055903-exon-scaffold_265-1491911889:92228..92616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:92228..104426 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.135672	0.262547	0.0513723	0.0625408	0	0	0	0	0.0788013	0.234926	0.0617725	0.421336	0.747636	0.0790017	0	0.667334	0.979982	4.49377	3.40116	0.523068	1.05487	1.26593	1.92306	0.455224	0.355505	9.27187	13.4912	0.134194	0.20033
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00055903 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 85.8853 bits (211), Expect = 1.662e-18
Identity = 36/94 (38.30%), Postives = 67/94 (71.28%), Query Frame = 3 
Query:   36 GERISLAITLLLAMTVFMLVVADIIPATSDVIPLVGIFFSASMIEMVIMIVVLCYIMRLYHKGPNDPPMPLWMKKYIYDWLSYKMRVRKQSRKQ 317
            GE+ISL IT+LL++TVFML+VA+I+PATSD +PL+  +F+++MI + + +VV   +++ +H  P+   MP W +  + +W ++ +R+++    +
Sbjct:  259 GEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDK 352
The following BLAST results are available for this feature:
BLAST of TCONS_00055903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA71.662e-1838.30Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
back to top