TCONS_00055908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055908
Unique NameTCONS_00055908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055908 ID=TCONS_00055908|Name=TCONS_00055908|organism=Clytia hemisphaerica|type=transcript|length=621bp
CAATCTTTCCTGAAAATCAGAGTTAGTACCCTGAGGATGTACCCGCCCCC
CTGAATTTTGAATGGAGACATTGATGAAATACAGAAGAAAGCATATGGAA
GGCTAAAAACTGATAAAAATCACTCAAAGATTTTTTGATACTTTAAGGTA
TTTTAGATTAATCTATCTTATATCATTTTCATAATATCACTTAATTGTAA
TTTTATGAGACGATTGGACTATAATATGTTTCATAGGAGATAAGACAGTA
TAAAAACGAAAGCAAAATATTGAGAGAGCTTTTGTTTCTTGCTCTTTTTA
TGGAAAGGGGATGATGTTGAAGGAGACACAATGGAAAGAAATGGCTGCTC
AATCTTCAAAGTCTAGATATGATTAATAACGTCTACAAGGGAAACAGAGT
AAAAAAGAAGGCCGAAACGATGGGGAAAAGGAGGACATAAACAATATTGA
GATATAAAAGggaacaatttcaatttttccctCCGAGGAAGAGTAGTATT
GTAGTAGTATTAGATTTTATGAATGTTGAGTTGGAAAATGTATGATGTTT
GACCTGACCTTTCACTTGAATTGATGATGGACGTTGTAGTGAGAGCTACA
ATGTTCTTCGTCTGCACAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_265:67351..67971

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055908 ID=TCONS_00055908|Name=TCONS_00055908|organism=Clytia hemisphaerica|type=transcript|length=621bp|location=Sequence derived from alignment at scaffold_265:67351..67971 (Clytia hemisphaerica)
GTCTGTGCAGACGAAGAACATTGTAGCTCTCACTACAACGTCCATCATCA
ATTCAAGTGAAAGGTCAGGTCAAACATCATACATTTTCCAACTCAACATT
CATAAAATCTAATACTACTACAATACTACTCTTCCTCGGagggaaaaatt
gaaattgttccCTTTTATATCTCAATATTGTTTATGTCCTCCTTTTCCCC
ATCGTTTCGGCCTTCTTTTTTACTCTGTTTCCCTTGTAGACGTTATTAAT
CATATCTAGACTTTGAAGATTGAGCAGCCATTTCTTTCCATTGTGTCTCC
TTCAACATCATCCCCTTTCCATAAAAAGAGCAAGAAACAAAAGCTCTCTC
AATATTTTGCTTTCGTTTTTATACTGTCTTATCTCCTATGAAACATATTA
TAGTCCAATCGTCTCATAAAATTACAATTAAGTGATATTATGAAAATGAT
ATAAGATAGATTAATCTAAAATACCTTAAAGTATCAAAAAATCTTTGAGT
GATTTTTATCAGTTTTTAGCCTTCCATATGCTTTCTTCTGTATTTCATCA
ATGTCTCCATTCAAAATTCAGGGGGGCGGGTACATCCTCAGGGTACTAAC
TCTGATTTTCAGGAAAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035204XLOC_035204Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055908-exon-scaffold_265-1491911889:67351..67971TCONS_00055908-exon-scaffold_265-1491911889:67351..67971Clytia hemisphaericaexon
TCONS_00055908-exon-scaffold_265-1510915933:67351..67971TCONS_00055908-exon-scaffold_265-1510915933:67351..67971Clytia hemisphaericaexon
TCONS_00055908-exon-scaffold_265-1575043694:67351..67971TCONS_00055908-exon-scaffold_265-1575043694:67351..67971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:67351..67971 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.116126	0.091764	0	0	0.0725641	0	0	0.0573495	0	0	0	0.0524736	0	0	0	0	0	0	0.0987332	0	0	0	0.236151	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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