|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055915 ID=TCONS_00055915|Name=TCONS_00055915|organism=Clytia hemisphaerica|type=transcript|length=4898bp
TTAGATTCAAAATGgtacaaagaaaataaatcaaaatatattggAATATG
TGGTTGAAGCAAGCTACTCATTTTCTGGTATTTCTGCAAATCTTTGTCAA
TATCATCTACGCATGCCCAGCAGATTGCACGTGCTATTTGACCTCAGTTA
TCTGTCAGTATAACTTTCTAAAGAAAATACCGAATGGGATTCCAGAATCG
ACGACCAAGTTATATCTTGATGGAAACCAAATAGAGAGAGTTGAAAGAGC
TGAACTATCCAATTTAAAAGATTTAGAACTGTTGAGTATTGGGAGTAATA
CCATAAGTTTTATTGAGGATGATGCTTTTCATAACTTGACAAAATTGACC
AGTCTACATATCAACGACAATAAACTGACAAGaatcaaaagaactttttt
caGCAACTCGCCGTTATTAAGGCATGTTCGAGCTGATCGCTTATCACCTA
ATGCTCCTTTAGAAATTGATGATCACGCTTTTGAAAATCAACAAGATCTA
GGTGAATTAAATCTAGCATCAAACAACATGGTTCGAATCTCAAATAACAC
TTTTGCTGGACTCTCAAACTTAAAGCATTTGGATATCTCCGATAACGACA
TCCAAGTTTATTCCTCGCACGCGTTTACACCTTTAACAAGCAGTCCAACA
ATTGAAATTGACGATGGTATTAAATGTTGTTGTCAAACCAAGGCTGCTTT
CACCGCATTCGGGATTTCTCAAACGTGTATTAATCCAGAAACAAACCAAC
AAGGAGATATTGCATCGTCGCCATGCACTGATACAGGAGTATGTGGAAGT
TTTAGAGAATCGACGAGTGATCTTTGGCCCCCGATGCCGCCAGAACCTAC
GACATCGGTAACATTTGCATCaccatcatcatcgtcatcatctTCATCAG
TAGTTGCAACAAATATTGAAAGTTCATCATCACCAAAATTctcatcttca
tcatcatcgtcaACAAGCAGTATTCTTCACAATTCCTCACCATCACCATC
GAGTAACATTGTGAGCTCATCAATGAGTGAATCGAAATCAGTTGAGATAC
AGGTGTTTCAGACATTGCTGACAGACTCGGTTTCTGATCACGTTTACACA
AATCACATAGATTCAGCATCATCTTCACCAGGTACAATAATGCATTCGAT
CCCTTCATCCCACTTAACACAAACAGTACTTGCAAATAGTGATTTATCAG
TTGTGAGCTCTAATATGATTTTAAGCACTTCAGTATCTTCATCGAATAGA
CTTCACAAATCAAAATCTAATTCGGTATCTGAGAGAACAACACTATCAAG
CACAAATGCATTTCACACTGAAACACTGAGCACTATGACAAAATCCTTAC
TGCACGAATCAGCCATATCACCAAGCTCAAATTACGAAATAAGCACAAAT
GTACTTAGCACCGAAAGCACGATGGCACAATCTTCAGAAATCTCAATTTA
TTCCCCGTCAATGTCCGATTCATACAATCTCCGGCCTGTCTCTTCCTCAC
TAGACATGTCATCAGTAATTCCAGCAAATTCAATTGAACCAACTCCCGTC
TCAAAACTGAGCGTACCGTCTACTTCTATCACAAACTCTTCAATCATTCC
TCAATCGTCAGCAGCTCCAGTGATCTCTTCTGAATCTAATGATCATACAA
CAGAGATACTAAATCACCAATATCCTTCAACTGTTAAACCAAAGCTCGAA
AGCAGTATGTCAATGCAAGAGCCTGACTATCAGACATCTTCCAAACACCC
TCATGCAATGCCTTCAATCAGCAATGATGTTGACCAAACCACCCAAGCAG
GGACGCTTCAACCTTCCTCTAACTATCCTTTGGAAGTATCTTCAATAATT
ATGTTACATACCATATCGCCATCGCATTCAGTACCAACACTTAACGGAAC
ATGCAGTGTCTCGACGTGTAAAGCAGGTTGTGAATTCTCACAACAACATT
GCCAATGCTTCGAAAAAGGTACTTCGAAAGCCTGTCTTATCACCAGTACG
CTAGATTCTCAAACAGGAGATGAAAACTCAATGGCAGATTGGCAGATGGC
AATTATCATTGGATCGTGTGTCGTTGTCTTGTGTTTCATCGTCTTCTTTA
TCTATTTCAAGAAGAAACAAAGTCGTGAACGACAATTTAACTTGAACACG
TCCCGACAAAATATGGCGATGAATGACAGTCCTCAAGGTCGTGACAATCG
TATGTTTATTATTGAAGAGACAAACGAGGCTGGACCAGTTAATCGACCAA
TTGCAGAAATGTATTAATCTCAGCGAGAAGCGGCGTTAGGACATCAATAA
CAGTGAATGTTCTCCAATGAACAACAACATGCCACCACTAAAGACTTATA
taacgagaaaaatatttgattgcTAGTGAGAGCTATTCGATGTTTTGTAT
TATAATTTCATTACTTATTATGAGTTTTTCAGGGTTTTATATCTGGTACT
GGAAGAGGGTCATGCAAATAAAATAAAGTACAGGGGCGAGTTACTGGTAA
GGATcccgttttttcaaaatttcatttaaatggGTCCAAATTTAGTCTGT
TACTGACGGTATGTAATTCTTAGGATTTCGAAATTGACTTGATTCTTGAC
CGTCAAATTTTGTTTCCCAAAGGAGCTCTAGAAAAAAAGATCAATATTAA
GCCAATACatgtctttttataagcatacaaaaatccaaagaCTGACTCGG
AGATGCTTAAATTGACAGATTGACAAGGCTGAAAAAAGCTTGATGGATgc
tatatttcaagcaaaattttagggaaTTTCCAAAAATCCGTAAAATCCCA
GAAAAAAACAGCGAAAATCTAGGCTCAGGTAATGCTTAACAATTGCTATA
TCTGAGCCTCGCTATGCTTATAAGTacaatgcttataataaaacatgtat
cattttgtatttgtaagcattaatattttatcttttgttcTAACCGTATT
TGTACAGATTTCTAATGCACTGTTATATAAAAGTTTGTATAAAATTAACT
AAAAGTCTACATTAAAAAGTTCAAAGTGTATTCACATATTATACAATTCA
TAAAACCGAATGATCATTCAAACGTACTTTACTCGAGTCTACTCAACTTG
AATCTCCATTGCTCGAATGTCTCCACCGTAGCTTGAATGGTTTTTAATCC
ATTGGGATCTAGTTCCCTTTAATTTAACATTTAGCATTTGACTTTCAGAG
AATCGCCTGTTTGACCATAGAAATTGACCAAAgttttgaaagatcttcta
tggaAGACAACTTCTGCTGGTAGAATGGTCTCGTTGGTGACATCACTTTT
CGGGAGAATTTTAGGCTATCAGGTTTCAACCCGATCAAACTTTATATAAT
TTATCCAAATAATTCAAAGTCAATGAAATTAACTTGCTGGTGTTGAATGG
ACCGATTTCTTATGCATTTGAAGGTTAATATcaaatttaaagaatttctc
GCAGATGTCACAGAAGCAAAGTGAACTCTTTTTACCAAACAACAGTTGGT
CATAAAACATTCTATTCCCATTTTTAGTTCTGTCTTTACTGTCAATATTC
ATAATTTCAGAGTTATGTCTTGTATTCAGTTTTGAGATCTGAGACTTTGA
GTTCTCCAAGTTTAAAATCGAAATCACATTTGAATCTTCTGTTCTATCCA
TGTTATGGACTAAAATGATATGTGATTTCAAGTTTGATAGATATCGAAAA
GACATGCCACAGGAGGAGCATTTATATCCATTAGGAACAGGTTCTTCGTC
TATTGCCCACAGACCATTGCAAGACTGAAATCGTTTATTCCTTGGAGCTC
CATATCTAGTATGTtgctgttttttgtttttgatcttCTTGAAGCTCAGA
CCGATTTTTTCGTgcgttttctttgattttgctgCTTGTTTCAACAAAGA
GGCTTCTTTTAAATGtctcattttgattttgaaatcttCGGTATCtgttt
tatttggtttattcATATTGGAGTCGTGCGTTACTTTCTTTATAGGGCTT
TGGAACAGTTGTCTTTTTACTGTTATTGGGTCTATTGCTTGTCTGGTTAC
CGTTAGTTCGTTAGATTGATTTTCACTTCTAGTGCTCGGTGAAGACTCTG
AAGATGTTGGAGGAGTTTCTTTCTTCTTCGTCGATACCCTTGGTGGAAAA
TTAGACGCAAGATTTCTTGATTTGGGAGATTTACATTTTGTCGTTTTCTG
GTGTTTTAAAGAAGTTGATAAGTTATGTTTCGGAGAGactgttttatttt
tagtttgactTGCATCGAGTATGTTTTTAAACCCGTTTGATGATCCGATA
AAGCTTGGACTTGGTACACATGTGCAATTTGTATCAATTGCTCGGGAGAG
TAAAACATTGCTGGTAGTTTGGGGATTGGCTTCAATTGAtagtttttcaa
aacttttatgtAAAACGTTTATGTTACTTTCGTCCAAAGTAACATTGGGG
GATTCAACATTAATCAACAATTTTTGAGTAACTTCTTCGTCGAAAGTTTT
ATCCAATAACTTTAGGCAATGATCTTTagaattttgatcaaaaattttca
gaacatcTTCATGAACATTTGAAAGCGGTGTCCTGGTGCAATCATCGTCG
CAATCTTTATCAAAAAATCTGTCACTTCTCTTAAACATATCTTCATTTTT
GTTCATCAACGAATGTTCATCTTTAGTCAGCAATTTTCGAACATCTTCGT
CTTCATTTGTATCCAAGAAAATATCGACGTCAGATTCAAAACCATCATCT
TTGGAATGATCAACATCATTTCTGATTTCATTGAAGATGAATGCTTGGTG
ATCCTGACTCATGCTCAGGCCATCAACTTTAACGTTTTTGTTACCGACTG
CTGATTCGAGTGAACGATTTGATTCATTTTCCGAATCTTCagtcttca Run BLAST on NCBI transcript from alignment at scaffold_266:32203..37100+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055915 ID=TCONS_00055915|Name=TCONS_00055915|organism=Clytia hemisphaerica|type=transcript|length=4898bp|location=Sequence derived from alignment at scaffold_266:32203..37100+ (Clytia hemisphaerica)
TTAGATTCAAAATGgtacaaagaaaataaatcaaaatatattggAATATG
TGGTTGAAGCAAGCTACTCATTTTCTGGTATTTCTGCAAATCTTTGTCAA
TATCATCTACGCATGCCCAGCAGATTGCACGTGCTATTTGACCTCAGTTA
TCTGTCAGTATAACTTTCTAAAGAAAATACCGAATGGGATTCCAGAATCG
ACGACCAAGTTATATCTTGATGGAAACCAAATAGAGAGAGTTGAAAGAGC
TGAACTATCCAATTTAAAAGATTTAGAACTGTTGAGTATTGGGAGTAATA
CCATAAGTTTTATTGAGGATGATGCTTTTCATAACTTGACAAAATTGACC
AGTCTACATATCAACGACAATAAACTGACAAGaatcaaaagaactttttt
caGCAACTCGCCGTTATTAAGGCATGTTCGAGCTGATCGCTTATCACCTA
ATGCTCCTTTAGAAATTGATGATCACGCTTTTGAAAATCAACAAGATCTA
GGTGAATTAAATCTAGCATCAAACAACATGGTTCGAATCTCAAATAACAC
TTTTGCTGGACTCTCAAACTTAAAGCATTTGGATATCTCCGATAACGACA
TCCAAGTTTATTCCTCGCACGCGTTTACACCTTTAACAAGCAGTCCAACA
ATTGAAATTGACGATGGTATTAAATGTTGTTGTCAAACCAAGGCTGCTTT
CACCGCATTCGGGATTTCTCAAACGTGTATTAATCCAGAAACAAACCAAC
AAGGAGATATTGCATCGTCGCCATGCACTGATACAGGAGTATGTGGAAGT
TTTAGAGAATCGACGAGTGATCTTTGGCCCCCGATGCCGCCAGAACCTAC
GACATCGGTAACATTTGCATCaccatcatcatcgtcatcatctTCATCAG
TAGTTGCAACAAATATTGAAAGTTCATCATCACCAAAATTctcatcttca
tcatcatcgtcaACAAGCAGTATTCTTCACAATTCCTCACCATCACCATC
GAGTAACATTGTGAGCTCATCAATGAGTGAATCGAAATCAGTTGAGATAC
AGGTGTTTCAGACATTGCTGACAGACTCGGTTTCTGATCACGTTTACACA
AATCACATAGATTCAGCATCATCTTCACCAGGTACAATAATGCATTCGAT
CCCTTCATCCCACTTAACACAAACAGTACTTGCAAATAGTGATTTATCAG
TTGTGAGCTCTAATATGATTTTAAGCACTTCAGTATCTTCATCGAATAGA
CTTCACAAATCAAAATCTAATTCGGTATCTGAGAGAACAACACTATCAAG
CACAAATGCATTTCACACTGAAACACTGAGCACTATGACAAAATCCTTAC
TGCACGAATCAGCCATATCACCAAGCTCAAATTACGAAATAAGCACAAAT
GTACTTAGCACCGAAAGCACGATGGCACAATCTTCAGAAATCTCAATTTA
TTCCCCGTCAATGTCCGATTCATACAATCTCCGGCCTGTCTCTTCCTCAC
TAGACATGTCATCAGTAATTCCAGCAAATTCAATTGAACCAACTCCCGTC
TCAAAACTGAGCGTACCGTCTACTTCTATCACAAACTCTTCAATCATTCC
TCAATCGTCAGCAGCTCCAGTGATCTCTTCTGAATCTAATGATCATACAA
CAGAGATACTAAATCACCAATATCCTTCAACTGTTAAACCAAAGCTCGAA
AGCAGTATGTCAATGCAAGAGCCTGACTATCAGACATCTTCCAAACACCC
TCATGCAATGCCTTCAATCAGCAATGATGTTGACCAAACCACCCAAGCAG
GGACGCTTCAACCTTCCTCTAACTATCCTTTGGAAGTATCTTCAATAATT
ATGTTACATACCATATCGCCATCGCATTCAGTACCAACACTTAACGGAAC
ATGCAGTGTCTCGACGTGTAAAGCAGGTTGTGAATTCTCACAACAACATT
GCCAATGCTTCGAAAAAGGTACTTCGAAAGCCTGTCTTATCACCAGTACG
CTAGATTCTCAAACAGGAGATGAAAACTCAATGGCAGATTGGCAGATGGC
AATTATCATTGGATCGTGTGTCGTTGTCTTGTGTTTCATCGTCTTCTTTA
TCTATTTCAAGAAGAAACAAAGTCGTGAACGACAATTTAACTTGAACACG
TCCCGACAAAATATGGCGATGAATGACAGTCCTCAAGGTCGTGACAATCG
TATGTTTATTATTGAAGAGACAAACGAGGCTGGACCAGTTAATCGACCAA
TTGCAGAAATGTATTAATCTCAGCGAGAAGCGGCGTTAGGACATCAATAA
CAGTGAATGTTCTCCAATGAACAACAACATGCCACCACTAAAGACTTATA
taacgagaaaaatatttgattgcTAGTGAGAGCTATTCGATGTTTTGTAT
TATAATTTCATTACTTATTATGAGTTTTTCAGGGTTTTATATCTGGTACT
GGAAGAGGGTCATGCAAATAAAATAAAGTACAGGGGCGAGTTACTGGTAA
GGATcccgttttttcaaaatttcatttaaatggGTCCAAATTTAGTCTGT
TACTGACGGTATGTAATTCTTAGGATTTCGAAATTGACTTGATTCTTGAC
CGTCAAATTTTGTTTCCCAAAGGAGCTCTAGAAAAAAAGATCAATATTAA
GCCAATACatgtctttttataagcatacaaaaatccaaagaCTGACTCGG
AGATGCTTAAATTGACAGATTGACAAGGCTGAAAAAAGCTTGATGGATgc
tatatttcaagcaaaattttagggaaTTTCCAAAAATCCGTAAAATCCCA
GAAAAAAACAGCGAAAATCTAGGCTCAGGTAATGCTTAACAATTGCTATA
TCTGAGCCTCGCTATGCTTATAAGTacaatgcttataataaaacatgtat
cattttgtatttgtaagcattaatattttatcttttgttcTAACCGTATT
TGTACAGATTTCTAATGCACTGTTATATAAAAGTTTGTATAAAATTAACT
AAAAGTCTACATTAAAAAGTTCAAAGTGTATTCACATATTATACAATTCA
TAAAACCGAATGATCATTCAAACGTACTTTACTCGAGTCTACTCAACTTG
AATCTCCATTGCTCGAATGTCTCCACCGTAGCTTGAATGGTTTTTAATCC
ATTGGGATCTAGTTCCCTTTAATTTAACATTTAGCATTTGACTTTCAGAG
AATCGCCTGTTTGACCATAGAAATTGACCAAAgttttgaaagatcttcta
tggaAGACAACTTCTGCTGGTAGAATGGTCTCGTTGGTGACATCACTTTT
CGGGAGAATTTTAGGCTATCAGGTTTCAACCCGATCAAACTTTATATAAT
TTATCCAAATAATTCAAAGTCAATGAAATTAACTTGCTGGTGTTGAATGG
ACCGATTTCTTATGCATTTGAAGGTTAATATcaaatttaaagaatttctc
GCAGATGTCACAGAAGCAAAGTGAACTCTTTTTACCAAACAACAGTTGGT
CATAAAACATTCTATTCCCATTTTTAGTTCTGTCTTTACTGTCAATATTC
ATAATTTCAGAGTTATGTCTTGTATTCAGTTTTGAGATCTGAGACTTTGA
GTTCTCCAAGTTTAAAATCGAAATCACATTTGAATCTTCTGTTCTATCCA
TGTTATGGACTAAAATGATATGTGATTTCAAGTTTGATAGATATCGAAAA
GACATGCCACAGGAGGAGCATTTATATCCATTAGGAACAGGTTCTTCGTC
TATTGCCCACAGACCATTGCAAGACTGAAATCGTTTATTCCTTGGAGCTC
CATATCTAGTATGTtgctgttttttgtttttgatcttCTTGAAGCTCAGA
CCGATTTTTTCGTgcgttttctttgattttgctgCTTGTTTCAACAAAGA
GGCTTCTTTTAAATGtctcattttgattttgaaatcttCGGTATCtgttt
tatttggtttattcATATTGGAGTCGTGCGTTACTTTCTTTATAGGGCTT
TGGAACAGTTGTCTTTTTACTGTTATTGGGTCTATTGCTTGTCTGGTTAC
CGTTAGTTCGTTAGATTGATTTTCACTTCTAGTGCTCGGTGAAGACTCTG
AAGATGTTGGAGGAGTTTCTTTCTTCTTCGTCGATACCCTTGGTGGAAAA
TTAGACGCAAGATTTCTTGATTTGGGAGATTTACATTTTGTCGTTTTCTG
GTGTTTTAAAGAAGTTGATAAGTTATGTTTCGGAGAGactgttttatttt
tagtttgactTGCATCGAGTATGTTTTTAAACCCGTTTGATGATCCGATA
AAGCTTGGACTTGGTACACATGTGCAATTTGTATCAATTGCTCGGGAGAG
TAAAACATTGCTGGTAGTTTGGGGATTGGCTTCAATTGAtagtttttcaa
aacttttatgtAAAACGTTTATGTTACTTTCGTCCAAAGTAACATTGGGG
GATTCAACATTAATCAACAATTTTTGAGTAACTTCTTCGTCGAAAGTTTT
ATCCAATAACTTTAGGCAATGATCTTTagaattttgatcaaaaattttca
gaacatcTTCATGAACATTTGAAAGCGGTGTCCTGGTGCAATCATCGTCG
CAATCTTTATCAAAAAATCTGTCACTTCTCTTAAACATATCTTCATTTTT
GTTCATCAACGAATGTTCATCTTTAGTCAGCAATTTTCGAACATCTTCGT
CTTCATTTGTATCCAAGAAAATATCGACGTCAGATTCAAAACCATCATCT
TTGGAATGATCAACATCATTTCTGATTTCATTGAAGATGAATGCTTGGTG
ATCCTGACTCATGCTCAGGCCATCAACTTTAACGTTTTTGTTACCGACTG
CTGATTCGAGTGAACGATTTGATTCATTTTCCGAATCTTCagtcttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055915-exon-scaffold_266-1491911889:32203..37100 | TCONS_00055915-exon-scaffold_266-1491911889:32203..37100 | Clytia hemisphaerica | exon |
| TCONS_00055915-exon-scaffold_266-1510915933:32203..37100 | TCONS_00055915-exon-scaffold_266-1510915933:32203..37100 | Clytia hemisphaerica | exon |
| TCONS_00055915-exon-scaffold_266-1575043694:32203..37100 | TCONS_00055915-exon-scaffold_266-1575043694:32203..37100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:32203..37100 + |
Blast
BLAST of TCONS_00055915 vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 6.301e-21 Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 3
Query: 111 ACPADCTCYLTSVICQYNFLKKIPNGIPESTTKLYLDGNQIERVERAELSNLKDLELLSIGSNTISFIEDDAFHNLTKLTSLHINDNKLTRIKRTFFSNSPLLRHVRADRLSPNAPLEIDDHAFENQQDLGELNLASNNMVRISNNTFAGLSNLKHLDISDNDI 602
ACP CTC SV C L+ +P GIP + +L LD N I R+ + + + LK+L +L + N +S IE AF +L +L L +N NKL + F ++P L R D LS N I AF D+ L L +N++ I + F L +L+ L +++N+I
Sbjct: 33 ACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKL--TRLD-LSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNI 193
The following BLAST results are available for this feature:
|
