TCONS_00055920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055920
Unique NameTCONS_00055920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055920 ID=TCONS_00055920|Name=TCONS_00055920|organism=Clytia hemisphaerica|type=transcript|length=1922bp
CCACAACTCAGTGGATTCCGACTGTGCATCAAGCGCGCTTTCATTCAATA
AACAAAATTCTTTCGAAAGTGAAGGTGGTGGTGGATGTGTTGGATGTGAA
GATCTTTTAGAATCAAAGCAGAAGAATACATGTGATCATCAAGGCATTAC
AGTAGAAGATAGCAGACCCGAAAGAAGCTTGAAGAAGAaaggtgaaactt
ttgaaatgaaatctaAAAAGACTTTAGTTGCGTTGTCAAGAGAAGAGGCA
TTTTCTGAAGTGAAAACATCCCAACGAAAAAGTGTCAGGACAGTTACCAC
AACAAGCAATACAAAGTGTatttccaaaaaagaaaatatatctgAAGTGG
TATTAAATGGAAGTTATCAAGTAGCAAAGACCAGTACACCTATTGAAAAG
CAAACAAGAACCAAATCAAAGCTTTATCAGAAAATTGGCATTATATGCAA
GCAGTGTAGTGGTATTCTTCTTGAATTATGCATCCAGGGCAGTATTAGTT
ATCTATGAATGTGTGAAATGGCTATTTATGAAATTATTGTCTTGTTTCAC
TGGCTTTGCTTCATTATTTACTgctgttaaaaatgaaaaattgtcaCAAA
AGTCATTTGCTTTGTACAGTTATGTTTGTACCAAAATAACATCATTTTGG
TCAATGGTGAAGAAAAGATGTCTAATCTTGTTGGGATTCATTGAAGAAAC
AAAAGATGAAATAGtggtttttatttttggtgGAACCAACTGCTGTGTCA
GCATTTTGCTCATCATCTTGACCCTCCCTTTCCTCTTGCTCTTCCTCACC
CTTTTCTCACAagTATCAAAGATCATCATCCCTGACCCCAGCAGTTTATC
TGTGTCCAAGTCACAGACTATCTTCCTTGGAACCTCAGGCAACACCATCC
CTGCATGGCACTTCCTGCCACCATCAGCAGAAATTCTTCCTCCTTCgaaa
actttcaatgataaatcCCCTGTTACACTGTATCTTCGAGAAGGCAATGA
TTTGGGATCTGACCTAcaattgaatattttcaaaacattggtGTCATTGG
GCTATCACGTTATTGTACCAGTCAATGTTTTGAACGAGGAGGAGGTGTCA
ATAGCTTGGTCATGGGTCAAAGAAAAAGCTTTTTCATCTTCAGCATATCT
TTGGGGAGACCATATCGACTCGAGCACACTGACGGGATATGCAAAAGATT
TCTGCACACAGCGGATTCCCCCAGATGGAGTGATCATTGAAACTGAACAC
CAAAGTTCTCAAAATTCACATCGAAGCCTCGAAATCTGGTCTTGCAATTG
TACGAACGTCGAGATTAAGAACACTGCTGAAGGAGAAGAAGGCAAATATC
ATCGCTACACACACGTAAAATGTCCCTTAAGTGATTTGGATGTCTCGCTG
GAAGATGTGTATAATCATATCGTGGCCTGTATTGCTGCGGTCAATCGAGG
CTCCGAGTAAATGAAAAAACTAtggattgaaataaaaaacgaaaattata
CCCTCCAAACTTTAATGAGCAAACTAGTGGGCTAGTAAAGACGTCGATTT
TTTCTGGGTTGATAAGAATTCGATTCGATCGAATACATAAGCGTTAGCGT
AGAAACCGCCCCGTTTAATTTTAATGGGTTTATTTAGGCACCACTCAGCA
ATGCCATTGATCACATATTATAGTTGTATAGACGGATAACGcactttttt
tattaatttttttagaacttttgattttatgttACTTGTCTTAATTTTTG
GTACATTCtttttatatttaattttttacggCTTTGAAATGattaatttt
ttgactttctgttaggggccgtccacatagtacgtacgcactaaaatatc
gaaaatcgaataccccctccccccctgtACGCAAATGACTATACCCCCtc
ctggtaagtacgtactttttcN
Run BLAST on NCBI

transcript from alignment at scaffold_266:170447..175038+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055920 ID=TCONS_00055920|Name=TCONS_00055920|organism=Clytia hemisphaerica|type=transcript|length=4592bp|location=Sequence derived from alignment at scaffold_266:170447..175038+ (Clytia hemisphaerica)
CCACAACTCAGTGGATTCCGACTGTGCATCAAGCGCGCTTTCATTCAATA
AACAAAATTCTTTCGAAAGTGAAGGTGGTGGTGGATGTGTTGGATGTGAA
GATCTTTTAGAATCAAAGCAGAAGAATACATGTGATCATCAAGGCATTAC
AGTAGAAGATAGCAGACCCGAAAGAAGCTTGAAGAAGAaaggtgaaactt
ttgaaatgaaatctaAAAAGACTTTAGTTGCGTTGTCAAGAGAAGAGGCA
TTTTCTGAAGTGAAAACATCCCAACGAAAAAGTGTCAGGACAGTTACCAC
AACAAGCAATACAAAGTGTatttccaaaaaagaaaatatatctgAAGTGG
TATTAAATGGAAGTTATCAAGTAGCAAAGACCAGTACACCTATTGAAAAG
CAAACAAGAACCAAATCAAAGGTAGATTGTACGCCAATCAATAATGGGTT
TTATGAAAATTCTTCCCATGTTTCttcccttgaaaaatcaacaaaatcaa
gcagccaaaaagaaacattttttcagaGCAAGTTAACGAAAACTTCAACT
TGTGCTTCTCAGAAACAGACTGTATTTTTAAATTCATTAGAGGATCATGT
GTTTCATGACACTTCTTACAAAAAAGTTGCATTGTTTGAAAATGAtgaac
aagaagaagaagaacaaatgGTTTCAAGGTTATCGCAATCCCTTGATAAT
AGTTTTCATTATCTATACAAACTTAATGGCTCATGTTTGAATGATTACAG
TGATCTATCAGAAGAGGAGGACAATCTCTTCGAAAATAAGGTGCAACAAA
ATATTAGCGTCAACCATCAAAGGAGGAGTTTATTTCGTCAAAAACGAAGA
GATTGGTACTTAAACCGTAGAAATTTTTCCACACAtataaacacaaataa
aaagtttttcatatTAACCCTTGTCACAACATATATTTTGACATTATGGA
AAAAACTGACACATTTAACTCTTTTGAGAAGGACATTATTCATGATAACA
AGGCTCTACTCACGGTTTTCCATCCTTTCTATTGTCCATAGCTTTATCAG
AAAATTGGCATTATATGCAAGCAGTGTAGTGGTATTCTTCTTGAATTATG
CATCCAGGGCAGTATTAGTTATCTATGAATGTGTGAAATGGCTATTTATG
AAATTATTGTCTTGTTTCACTGGCTTTGCTTCATTATTTACTgctgttaa
aaatgaaaaattgtcaCAAAAGTCATTTGCTTTGTACAGTTATGTTTGTA
CCAAAATAACATCATTTTGGTCAATGGTGAAGAAAAGGTATACATATCAT
AATTTTTTAAGATGTTACACTTTTGATAAGACAACCTAGATAACAGTAAA
ATGTAGGGAACTTATTGGTCAGTTTGAAACGGgagattttaaaacttttt
aatgcCAAAAATGAAGGTCAATAAGAATAGGGACTTTTTTGCTCTACTTG
TTCCTTCCCTATGAATGTTTTTTAAACTATTTAATACTTCACAATAAAAT
CGTTTTTAAAGCTAGTTTTTCTTCTGATTATTTTATTAAAACCAACAAGA
ATGATTTATTCACCTGCCTTTAATTTAATTCCAAGTCTTTATTGAGtgtt
tcaataggaattttcttttttcatgttttcttttatttctttagATGTCT
AATCTTGTTGGGATTCATTGAAGAAACAAAAGATGAAATAGtggttttta
tttttggtgGAACCAACTGCTGTGTCAGCATTTTGCTCATCATCTTGACC
CTCCCTTTCCTCTTGCTCTTCCTCACCCTTTTCTCACAaggtaatttttg
ttaaaattttttcttactttcaaaataatattttattcaaattcttaaAC
TACTAGAAAGGGAACCCAAACATAtactatatttttcaagttgttgtttt
tgctgatttcaaaCTATAATACCTTGATCACTATTGTATCATTTTTTCAT
cagtttttattttccttttgtttCTCTTGTAGTATCAAAGATCATCATCC
CTGACCCCAGCAGTTTATCTGTGTCCAAGTCACAGACTATCTTCCTTGGA
ACCTCAGGCAACACCATCCCTGCATGGCACTTCCTGCCACCATCAGCAGA
AATTCTTCCTCCTTCgaaaactttcaatgataaatcCCCTGTTACACTGT
ATCTTCGAGAAGGCAATGATTTGGGATCTGACCTAcaattgaatattttc
aaaacattggtGTCATTGGGCTATCACGTTATTGTACCAGTCAATGTTTT
GAACGAGGAGGAGGTGTCAATAGCTTGGTCATGGGTCAAAGAAAAAGCTT
TTTCATCTTCAGCATATCTTTGGGGAGACCATATCGACTCGAGGTTTGTA
TGGGTTTTTTAACTGATGTGCTTTGAATAGTAACTGTTTATCATTCAATT
TGTAATCTTTCAATAAAAGTGTCTGTGATATCTCAGCATATCTTCATGGA
GCTGtctgaatttgaatttttgattgatgattgattCGACTTGCTAAAGT
TTCGTAATTTAATTTACTCTACTTTATTTTTAAAGCTCTTTCCAATCAAT
AAAACCTCAGTTCTCAAATATAGAGTTTTCAGTGAACCACTAAAGCCTTC
GTTCACGGAAAGAATATGAAATCAGTCTGACCTACTTATCTTCTTTTCGA
GACACCCTTTTAAAATATCTTTACGTTAAAATTGTCATGGTAATTTAATT
ATAATTGGTTGCCATGCCAATGGATGACCACATTTTAATTCCTAGGAGTG
GTTTTAATAATAGCTTATTTCCAAAGCTCTCTATGCCTTTAGACTTGACA
TGAAAAGGTGACACTCGTATAAACAAGTATGTATTTCTTTGCACAGACAA
ATCCCCTAGAAACTATTCATAAAATgcagaaaaaagaattttatttgcaa
aaagatTGACATGTGATAAAAATGTCGAATTAAGGAGCTTGTGACAGTTT
AAATAAATGTTTGAGATAATGTATTTTGTTGCTATATCTCTATCTACAGC
ACACTGACGGGATATGCAAAAGATTTCTGCACACAGCGTAAGTGAACAGT
TCGACTCTGTTTCGAACTATTTTCATTGCTAGTATACATAATTCATCTCT
CGtcaatttttaatgatattctCTCTCTTTGTATATATATTATGTCAAAA
ACTTAAtttattgattttgaaaacCACAGTTCCCTGTGTGATTGTCGTTA
CTGAATACCAAGAGCGTCAagttattcacatattttaaatTTCCGAGTTT
TTATTCTCGGTTTTAATCGGCCTTCAACCCTTTTATATTCTACGTTTAAA
AGTAATGACTTCCTTTAAAATGTTCCTTAATTCTTATCTCTCGTAAGTTT
AAAGATGGGTCTGCAAGGCaagtaaaaagttaaaaagtcaaGTCCCCGCT
CTTGTTTCACTACTTTCATCGATTTAGCATGCTTAACCTTCCACTTTTTA
GGGATTCCCCCAGATGGAGTGATCATTGAAACTGAACACCAAAGTTCTCA
AAATTCTGTACGTATCTTTAATCGATTTGTTTCTNCATTGAAACTGAACA
CCAAAGTTCTCAAAATTCAGTATGTATCTTTAATcgatttgtttcttttt
tcatgTGGTCGTTTTTTCAAACCGTTAACTCTTTCAATATACATATATAG
AGTTTATAATAATTCTAAGGTTTTTTATGTGCTAAGATGTCGTAGACACG
AGTTGGGAAAAGAACATCTTTTTGAAGCTAGTGCAATGCAAAAAGCTCCT
GATGGTGGGACAACAAATCATGGATGAAAAAGGTCGCAAGTCGCATAATT
ATAAGTCTACCATCTCTTTTTTATATAACCCTCATAAGTCAATTTTTCCT
TAATCCAATCGCTTTTACGGGGTCATTGGGTTTAGATGTGTGTTTAAAAG
GATAACTTATTTATTGACTATTCTCCTTTTACTCGTAGCATCGAAGCCTC
GAAATCTGGTCTTGCAATTGTACGAACGTCGAGATTAAGAACACTGCTGA
AGGAGAAGAAGGCAAATATCATCGCTACACACACGTAAAATGTCCCTTAA
GTGATTTGGATGTCTCGCTGGAAGATGTGTATAATCATATCGTGGCCTGT
ATTGCTGCGGTCAATCGAGGCTCCGAGTAAATGAAAAAACTAtggattga
aataaaaaacgaaaattataCCCTCCAAACTTTAATGAGCAAACTAGTGG
GCTAGTAAAGACGTCGATTTTTTCTGGGTTGATAAGAATTCGATTCGATC
GAATACATAAGCGTTAGCGTAGAAACCGCCCCGTTTAATTTTAATGGGTT
TATTTAGGCACCACTCAGCAATGCCATTGATCACATATTATAGTTGTATA
GACGGATAACGcactttttttattaatttttttagaacttttgattttat
gttACTTGTCTTAATTTTTGGTACATTCtttttatatttaattttttacg
gCTTTGAAATGattaattttttgactttctgttaggggccgtccacatag
tacgtacgcactaaaatatcgaaaatcgaataccccctccccccctgtAC
GCAAATGACTATACCCCCtcctggtaagtacgtactttttcN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035213XLOC_035213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055920-exon-scaffold_266-1491911889:170447..170867TCONS_00055920-exon-scaffold_266-1491911889:170447..170867Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:170447..170867TCONS_00055920-exon-scaffold_266-1510915933:170447..170867Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:170447..170867TCONS_00055920-exon-scaffold_266-1575043694:170447..170867Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1491911889:171488..171733TCONS_00055920-exon-scaffold_266-1491911889:171488..171733Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:171488..171733TCONS_00055920-exon-scaffold_266-1510915933:171488..171733Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:171488..171733TCONS_00055920-exon-scaffold_266-1575043694:171488..171733Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1491911889:172091..172236TCONS_00055920-exon-scaffold_266-1491911889:172091..172236Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:172091..172236TCONS_00055920-exon-scaffold_266-1510915933:172091..172236Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:172091..172236TCONS_00055920-exon-scaffold_266-1575043694:172091..172236Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1491911889:172429..172789TCONS_00055920-exon-scaffold_266-1491911889:172429..172789Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:172429..172789TCONS_00055920-exon-scaffold_266-1510915933:172429..172789Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:172429..172789TCONS_00055920-exon-scaffold_266-1575043694:172429..172789Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1491911889:173446..173483TCONS_00055920-exon-scaffold_266-1491911889:173446..173483Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:173446..173483TCONS_00055920-exon-scaffold_266-1510915933:173446..173483Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:173446..173483TCONS_00055920-exon-scaffold_266-1575043694:173446..173483Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1491911889:173898..173920TCONS_00055920-exon-scaffold_266-1491911889:173898..173920Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:173898..173920TCONS_00055920-exon-scaffold_266-1510915933:173898..173920Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:173898..173920TCONS_00055920-exon-scaffold_266-1575043694:173898..173920Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1491911889:173983..174015TCONS_00055920-exon-scaffold_266-1491911889:173983..174015Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:173983..174015TCONS_00055920-exon-scaffold_266-1510915933:173983..174015Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:173983..174015TCONS_00055920-exon-scaffold_266-1575043694:173983..174015Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1491911889:174385..175038TCONS_00055920-exon-scaffold_266-1491911889:174385..175038Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1510915933:174385..175038TCONS_00055920-exon-scaffold_266-1510915933:174385..175038Clytia hemisphaericaexon
TCONS_00055920-exon-scaffold_266-1575043694:174385..175038TCONS_00055920-exon-scaffold_266-1575043694:174385..175038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:170447..175038 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.552001	0.617648	0	1.34618	0	1.08742	0.258285	0.129777	3.39034	2.13958	3.1735	1.40136	5.1189	5.26885	1.84966	3.11296	2.80939	3.36617	1.99851	4.91806	0	0.00153586	0.0797076	0.678945	2.3108	2.49618	0.40209	0.331304	0.522329	1.09131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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