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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055931 ID=TCONS_00055931|Name=TCONS_00055931|organism=Clytia hemisphaerica|type=transcript|length=930bp
GAAAACTATTTTGTTCAGTTGAACTTTTTCTTATACTCTAATACAAGAAG
CTTGAAGAAGACCTAAGAAAAGACAACCGAAGGAAACACAAATAGACATA
CAAACGAAGGATGGGAAAGAAAGGATTGGCATCTGGCgaaggaaagaaaa
agaagaagaaggaacAAGCACCtcaagatgaagaagaaaatgaacaaCAA
GAAGAACAAAAACCAACGTTAGAAGACCTCGAAAAAGACATCGCTCTATT
GAGGGAAAAAGGCAGAGAAGATCCGGAGAATGTGGATTTCGTCCAAGAAT
TACGAAAGATTCAAGATCAAATGGCCGACATCATGGGTAAAGACAAACGC
CCGATGACCGCCAAACCGGGCGAAGAAGAAGAGAgtgaggaagaagaaga
agAGGAGGAAGAGGATCCTGACAAAGAAGTAAAAGACTTGATCAACAAAC
GTCTGACGTCATGTATGTTACTGGCTCTCTCTTTCGAAAGTGAAGACTCC
TATCCTGAAGATTTTTACGAAAAACTCAAAGAATCTGCAAAACTCGACGA
AGTCACTGAGCCCATCACCAATGAAGAACGCAAAATTCTCAATAATTTGT
TGAAAGAGAAAAAACCTGAAGCAAAGAAACGAGTAAAACGTGCTGGTAAA
AATAAAGACACGGCGAAGTCACCCAAGAAGTAATTTTCGTGTTTGTGTTT
TTTCGACCGAgaccaaagtttttgaaattttatcaatAATGGATCACCGT
TGATACGTCTAAGCTAGGAAGAATGAAACATTTGATTTGACTGGAATTGA
GAGATTCTTGATAGAAAAGCTAAAGAATTGTAAATTTAGTATTGCTGACA
ATAACGCACAATTATATTTTCCTTTGTAAATACACTTTTGTTCCAATAGT
ATCGAAAAACCTACACATTTTTGCCCTTGT Run BLAST on NCBI transcript from alignment at scaffold_266:216960..219171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055931 ID=TCONS_00055931|Name=TCONS_00055931|organism=Clytia hemisphaerica|type=transcript|length=2212bp|location=Sequence derived from alignment at scaffold_266:216960..219171+ (Clytia hemisphaerica)
GAAAACTATTTTGTTCAGTTGAACTTTTTCTTATACTCTAGTAAGACGTC
ATTTTGCAAGGAGCTTCAAGAAAAAAGGTGAACTTCATTTTTGCAAAGGC
AACATATTTTAAAACCTTTTCGACTTTTAATACAATAAACAGTAATCAGA
CAAAGTCAAGTCGTTATCTAATGTCTTATTTACTAGAAATTTAATTTCTC
ATTCGTTATTTTTCACAAGATACAAGAAGCTTGAAGAAGACCTAAGAAAA
GACAACCGAAGGAAACACAAATAGACATACAAACGAAGGATGGGAAAGAA
AGGATTGGCATCTGGCgaaggaaagaaaaagaagaagaaggaacAAGCAC
CtcaagatgaagaagaaaatgaacaaCAAGAAGAACAAAAACCAACGTTA
GAAGACCTCGAAAAAGACATCGCTCTATTGAGGGAAAAAGGTAAGAAAAC
ATTAATAAGAGATGGTAGTATTAGTAGTAGATACAGAAAACATTTTCCAC
TTTCATCTAGTGATCAttgtaaaaatttatttgattgaATTCTTGAAATT
AATACTCTAGCTAAATGATGATGAATCCTAAAATAATTTTCTGCATTATT
TTATGAAATATGAAtgttttttatctgaaaattgaATCTCTttctatttc
aatgaatttttcAGGCAGAGAAGATCCGGAGAATGTGGATTTCGTCCAAG
AATTACGAAAGATTCAAGATCAAATGGCCGACATCATGGGTAAAGACAAA
CGCCCGATGACCGCCAAACCGGGCGAAGAAGAAGAGAgtgaggaagaaga
agaaggtgAGAAAGGAAGATTGGATTTTTTATGGGGAGCGGAAGATCGGA
TTTCCGATGAAGGGAAAAGGAAAGCACAATAGacaaccctgtctcagtga
caAACATTTTGCTGTTTAAGGGCAGAATGAAAAAAGCTAATACCAATGTG
TGTTGTCTAATTTTAACTGGCTGGGTTTCATATCTTATTACTTCATGTCT
CTACCAGTGAGTAGGATAGTGTAGATTTCCAATTTAGGATGTTTTTCTCA
TCGGGGACGATTTTACCAGCGGGAGAGATCCATACGGGGATGTAGATCAA
TAAGTGGATAAACCGAATTAAACGAGTGTAACAAAAAGGAAGCAAAGCTG
ACTATAAGAAATATTAAGGTTTTTTATCCACAAAGGTTTGCTGGGAGGGG
GGTCGAAGTGATGCAGGATCGTTCGAGGAAAAGGTTTTACCGAAACCACT
Acgatcaaagtcataatattttagaagaaagggaaattcccaagaaatct
tacaaccacaaacgatttgaaaGCGCTCTAAATTAAGTTGGATGGATAAG
AGCTCTAACTCTGagttaacgctagacttaaggtCCAAGAATGGTCCGAT
GGGGCTCAGAATACAGCCTGAAAGTCTATAAACCACTCCCGGGTTGAAAT
ATtccaataaatttatcaattagctaGCCTCAAAGCGACTTtcttgcccg
aactttaaattgctaaaaacgaggaattaaccaaaattctcaatatattt
tgaccaagaTTGTAGATGGTTGttaatatttataaaatttaacattttat
tttataaaatttaacattttattttataaaaaaatttaacattttatttt
ataaaatttaacattttatttcatttttttacagAGGAGGAAGAGGATCC
TGACAAAGAAGTAAAAGACTTGATCAACAAACGTCTGACGTCATGTATGT
TACTGGCTCTCTCTTTCGAAAGTGAAGACTCCTATCCTGAAGATTTTTAC
GAAAAACTCAAAGAATCTGCAAAACTCGACGAAGTCACTGAGCCCATCAC
CAATGAAGAACGCAAAATTCTCAATAATTTGTTGAAAGAGAAAAAACCTG
AAGCAAAGAAACGAGTAAAACGTGCTGGTAAAAATAAAGACACGGCGAAG
TCACCCAAGAAGTAATTTTCGTGTTTGTGTTTTTTCGACCGAgaccaaag
tttttgaaattttatcaatAATGGATCACCGTTGATACGTCTAAGCTAGG
AAGAATGAAACATTTGATTTGACTGGAATTGAGAGATTCTTGATAGAAAA
GCTAAAGAATTGTAAATTTAGTATTGCTGACAATAACGCACAATTATATT
TTCCTTTGTAAATACACTTTTGTTCCAATAGTATCGAAAAACCTACACAT
TTTTGCCCTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055931-exon-scaffold_266-1491911889:216960..216999 | TCONS_00055931-exon-scaffold_266-1491911889:216960..216999 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1510915933:216960..216999 | TCONS_00055931-exon-scaffold_266-1510915933:216960..216999 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1575043694:216960..216999 | TCONS_00055931-exon-scaffold_266-1575043694:216960..216999 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1491911889:217179..217399 | TCONS_00055931-exon-scaffold_266-1491911889:217179..217399 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1510915933:217179..217399 | TCONS_00055931-exon-scaffold_266-1510915933:217179..217399 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1575043694:217179..217399 | TCONS_00055931-exon-scaffold_266-1575043694:217179..217399 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1491911889:217624..217764 | TCONS_00055931-exon-scaffold_266-1491911889:217624..217764 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1510915933:217624..217764 | TCONS_00055931-exon-scaffold_266-1510915933:217624..217764 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1575043694:217624..217764 | TCONS_00055931-exon-scaffold_266-1575043694:217624..217764 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1491911889:218644..219171 | TCONS_00055931-exon-scaffold_266-1491911889:218644..219171 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1510915933:218644..219171 | TCONS_00055931-exon-scaffold_266-1510915933:218644..219171 | Clytia hemisphaerica | exon |
| TCONS_00055931-exon-scaffold_266-1575043694:218644..219171 | TCONS_00055931-exon-scaffold_266-1575043694:218644..219171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:216960..219171 + |
Blast
The following BLAST results are available for this feature:
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