TCONS_00055937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055937
Unique NameTCONS_00055937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055937 ID=TCONS_00055937|Name=TCONS_00055937|organism=Clytia hemisphaerica|type=transcript|length=2340bp
GTTAGATTTTCTTTAGACATTTCCTTAACTTAAGCATGTTATCACAGAGT
TTTCGAAATAGGCACACCGATGGCGGCTAGTTGATTTGAAGCGTCCACTG
GCTGTTGCGGTAACGGTGTTTCTGGAAACTGAGAAGGAATCTGCATAATG
TAACTTCCATTCGCATCTTCCACCGGTTGCTGTTGTGCCATTGGTTGGTT
GTATTCCACGTGGGGCTGTTGCATTGTGGGATCGTTCTGAATGAAAAGAG
GTGAACCCGGGGCGAAATTCTGATAGTTGACGACATTGTTGGTTGCATTA
GGTCGATACTCAGGAGCGTACGGTGAAAGGTAACCATTTTTGTTCTGGGG
AAGTTTGTTGTTTGGTGGAGTGGTGGAAGGTTCGTTGTGTGGAATAGGTG
GTTGCTGGAGACAGGTTTGAGGGTAAATCACTTGCTGGTTGTTCGGTACA
GGGAACATCTGCAGAATGGCATTCAAGTCTTGCGTTGAAACATATTCTTG
ATTGTTCAAAGCCATCAACAACATTGCAATTTTGTGTTCAGCTTCTAACG
AGAAATTTTGCATGTTCTTTTGAGTAAACAATAAATCTTGTTTCAATCCA
TGGATTTTGTTCTTAAGGAAAGTATTTTCGCGGATCAACGAATTTCGGTG
TTGGCGAATGGCAGAGTATTGCTTTTCCAGTGTCACTCGATCAACTTCTG
CgacatttttgttgaaattgggGCGTGTTGTGGTGAAAGGTTGTTGGTTC
ACCATACCACGATCAGGGATGGCAACGGTGGTAAGTGAAGAAGATGGAGT
CAAATCGATTGGTTTGCCATATTTTCGACGTTGTCGGCGAGCGGGACGTC
GCGTGTCTACAACTTGGATTTGTTGTTCATTGCTTTCGGGATCAGTGGTC
TTTTTGATGGGGATGAGACCAGCAGGGAAGTATTGATAATCTGATGGGTT
GTTATTATTTCCGTATGAGGACGGAAGAGATTCTTGGCTTTGCGATCGAC
CAGCCGATTGGTGATACCAGCTTGATTCATCATCGGTACAATCGGTTGTT
TCACCACCGGCTCGTCGGCGTCGGTCGACAGTCATGTTTTCAGCTGACGT
CGATGCAGAAACACAAGAATATTCACAGTTGAGGGGTCTGTTATCATCGA
TATCAGAAACACAAGACATTCCACCATCAGTTCCTTCACCAGATCTGCTG
TGAGATGAGCTGGCTGCTTGACGTTGAACAATATTCAACTCCTCCATAGC
TCTGGATAACTGCATTTGATTGACTTGCAATTTCTGTTCGGTTTCAATAA
ATTTTTGACGAAAGAATTGGATATCATTACTGGCTTCTTTGAAACGATTT
TCAGCAACAGCAAGATCACTTTGTTTTTGACTTGCGTTAGTTGATTCGTT
AACAACGCGACTTTCGAGTTCTCGAATGGTTCTCTCGTACTCACGTGACA
AGGTTGTTTTGCTTTCGTTtccttttttcaattctttctcTAATCGATCG
ATGATTTCTTCATGTGTTTTCGCTTGCTCCAGTAACTTCTTctcaagttt
ttcaattttggaagTATATTCATTCAATTGAGTTTGGGTGGTAGAATCGG
AAACTTCGATCGGTTTTTGTGTTCCCGAATCGGTAACATCGATTTGTTTT
TGAGTCGATGAATCGGATACATCGATTTGCTTTTGAGTCGATGAATCGGA
CACATCGATTTGTTTTTGTGTGGACGAGTCGGAGACATCGATTCCTTTCT
GAGTTGTAGAATCTGTGACTTCAGTTTGGCTTTGTTTTTTATCAAGCAAC
GTTTTCTTGAACTCTGCTCGTTCTTTATTCAACGCAAGTTCTAAACGAAT
CGTGTTTCTTTCTAAGAGTTCAATTTGTTCGATACTATGATCACGAAGTT
CTGTCATTTCATCCTGGTGTTCTTGGCGATCTTCCAGTATCTGGATTTTC
AAGTGATGAATGAGTTCATTGTCTTGGCGCATTTGCCGTTTGATTTTACA
ATAGTCCATTTGGTAGTCATGGTATTCTTCTTTCATTTCATACATTCCCT
CGTGGAGAGTCACATTCTCGTCTTGGATAGCCAGATTCTCTTCGCGAAGA
TCAGTATTAATCATGGCATGTCGACCAAATTTGACAGTCATTTCATTCAA
TTCTTGAGTTTGCCGATCAATGAACCCCATTTGTTGTTTCAAAGATTGCA
TGAGAACCTTGAGAGCGTTTTCAGCTATCGACCTCCTCCTTTTCTCTGAT
TCCAGTTTAGAAGAAACAGTTTTCTCGGGCACGTTGCCAGATTCGATGGA
TGAATCACTTTCACTTAATTGAACTTCATTTGGATTGGGA
Run BLAST on NCBI

transcript from alignment at scaffold_266:412905..415306+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055937 ID=TCONS_00055937|Name=TCONS_00055937|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at scaffold_266:412905..415306+ (Clytia hemisphaerica)
GTTAGATTTTCTTTAGACATTTCCTTAACTTAAGCATGTTATCACAGAGT
TTTCGAAATAGGCACACCGATGGCGGCTAGTTGATTTGAAGCGTCCACTG
GCTGTTGCGGTAACGGTGTTTCTGGAAACTGAGAAGGAATCTGCATAATG
TAACTTCCATTCGCATCTTCCACCGGTTGCTGTTGTGCCATTGGTTGGTT
GTATTCCACGTGGGGCTGTTGCATTGTGGGATCGTTCTGAATGAAAAGAG
GTGAACCCGGGGCGAAATTCTGATAGTTGACGACATTGTTGGTTGCATTA
GGTCGATACTCAGGAGCGTACGGTGAAAGGTAACCATTTTTGTTCTGGGG
AAGTTTGTTGTTTGGTGGAGTGGTGGAAGGTTCGTTGTGTGGAATAGGTG
GTTGCTGGAGACAGGTTTGAGGGTAAATCACTTGCTGGTTGTTCGGTACA
GGGAACATCTGCAGAATGGCATTCAAGTCTTGCGTTGAAACATATTCTTG
ATTGTTCAAAGCCATCAACAACATTGCAATTTTGTGTTCAGCTTCTAACG
AGAAATTTTGCATGTTCTTTTGAGTAAACAATAAATCTTGTTTCAATCCA
TGGATTTTGTTCTTAAGGAAAGTATTTTCGCGGATCAACGAATTTCGGTG
TTGGCGAATGGCAGAGTATTGCTTTTCCAGTGTCACTCGATCAACTTCTG
CgacatttttgttgaaattgggGCGTGTTGTGGTGAAAGGTTGTTGGTTC
ACCATACCACGATCAGGGATGGCAACGGTGGTAAGTGAAGAAGATGGAGT
CAAATCGATTGGTTTGCCATATTTTCGACGTTGTCGGCGAGCGGGACGTC
GCGTGTCTACAACTTGGATTTGTTGTTCATTGCTTTCGGGATCAGTGGTC
TTTTTGATGGGGATGAGACCAGCAGGGAAGTATTGATAATCTGATGGGTT
GTTATTATTTCCGTATGAGGACGGAAGAGATTCTTGGCTTTGCGATCGAC
CAGCCGATTGGTGATACCAGCTTGATTCATCATCGGTACAATCGGTTGTT
TCACCACCGGCTCGTCGGCGTCGGTCGACAGTCATGTTTTCAGCTGACGT
CGATGCAGAAACACAAGAATATTCACAGTTGAGGGGTCTGTTATCATCGA
TATCAGAAACACAAGACATTCCACCATCAGTTCCTTCACCAGATCTGCTG
TGAGATGAGCTGGCTGCTTGACGTTGAACAATATTCAACTCCTCCATAGC
TCTGGATAACTGCATTTGATTGACTTGCAATTTCTGTTCGGTTTCAATAA
ATTTTTGACGAAAGAATTGGATATCATTACTGGCTTCTTTGAAACGATTT
TCAGCAACAGCAAGATCACTTTGTTTTTGACTTGCGTTAGTTGATTCGTT
AACAACGCGACTTTCGAGTTCTCGAATGGTTCTCTCGTACTCACGTGACA
AGGTTGTTTTGCTTTCGTTtccttttttcaattctttctcTAATCGATCG
ATGATTTCTTCATGTGTTTTCGCTTGCTCCAGTAACTTCTTctcaagttt
ttcaattttggaagTATATTCATTCAATTGAGTTTGGGTGGTAGAATCGG
AAACTTCGATCGGTTTTTGTGTTCCCGAATCGGTAACATCGATTTGTTTT
TGAGTCGATGAATCGGATACATCGATTTGCTTTTGAGTCGATGAATCGGA
CACATCGATTTGTTTTTGTGTGGACGAGTCGGAGACATCGATTCCTTTCT
GAGTTGTAGAATCTGTGACTTCAGTTTGGCTTTGTTTTTTATCAAGCAAC
GTTTTCTTGAACTCTGCTCGTTCTTTATTCAACGCAAGTTCTAAACGAAT
CGTGTTTCTTTCTAAGAGTTCAATTTGTTCGATACTATGATCACGAAGTT
CTGTCATTTCATCCTGATGTTCTTGGCGATCTTCCAGTATCTGAATTTTC
AAGTGATGAATGAGNACATTTCATCCTGGTGTTCTTGGCGATCTTCCAGT
ATCTGGATTTTCAAGTGATGAATGAGTTCATTGTCTTGGCGCATTTGCCG
TTTGATTTTACAATAGTCCATTTGGTAGTCATGGTATTCTTCTTTCATTT
CATACATTCCCTCGTGGAGAGTCACATTCTCGTCTTGGATAGCCAGATTC
TCTTCGCGAAGATCAGTATTAATCATGGCATGTCGACCAAATTTGACAGT
CATTTCATTCAATTCTTGAGTTTGCCGATCAATGAACCCCATTTGTTGTT
TCAAAGATTGCATGAGAACCTTGAGAGCGTTTTCAGCTATCGACCTCCTC
CTTTTCTCTGATTCCAGTTTAGAAGAAACAGTTTTCTCGGGCACGTTGCC
AGATTCGATGGATGAATCACTTTCACTTAATTGAACTTCATTTGGATTGG
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035220XLOC_035220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055937-exon-scaffold_266-1491911889:412905..414809TCONS_00055937-exon-scaffold_266-1491911889:412905..414809Clytia hemisphaericaexon
TCONS_00055937-exon-scaffold_266-1510915933:412905..414809TCONS_00055937-exon-scaffold_266-1510915933:412905..414809Clytia hemisphaericaexon
TCONS_00055937-exon-scaffold_266-1575043694:412905..414809TCONS_00055937-exon-scaffold_266-1575043694:412905..414809Clytia hemisphaericaexon
TCONS_00055937-exon-scaffold_266-1491911889:414872..415306TCONS_00055937-exon-scaffold_266-1491911889:414872..415306Clytia hemisphaericaexon
TCONS_00055937-exon-scaffold_266-1510915933:414872..415306TCONS_00055937-exon-scaffold_266-1510915933:414872..415306Clytia hemisphaericaexon
TCONS_00055937-exon-scaffold_266-1575043694:414872..415306TCONS_00055937-exon-scaffold_266-1575043694:414872..415306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:412905..415306 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227989	0.164676	0.20159	0.217545	0.185117	0.073509	0.245057	0.187301	0.0251996	0.0893792	0.241994	0.00995799	0.0248604	0.0499868	0.0694565	0.228168	0.0599426	0.215158	0.0530929	0	0.128773	0.0918164	0.197514	0.177801	134.749	74.9597	0.0740839	0.10591	0.107105	0.148694
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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