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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055951 ID=TCONS_00055951|Name=TCONS_00055951|organism=Clytia hemisphaerica|type=transcript|length=5166bpRun BLAST on NCBI transcript from alignment at scaffold_266:488194..517296+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055951 ID=TCONS_00055951|Name=TCONS_00055951|organism=Clytia hemisphaerica|type=transcript|length=29103bp|location=Sequence derived from alignment at scaffold_266:488194..517296+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055951 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 134.806 bits (338), Expect = 2.568e-31 Identity = 128/489 (26.18%), Postives = 184/489 (37.63%), Query Frame = 3
Query: 3585 VCGSDGQTHSNNCEMEMKACVKSSKIFKMHDGECGKC-------------------------VKVCPFNYEPQCGTDGKNYDNQCIMQQKTCQTGGKVGLAYEGEC-GNPACPD----------------------SCDSADKEQVCGSDGNTYESFCKLQQKSCATGSVVKFKHFGKC--------------------------VKCSPICNKMWDPYCGTDDRTYGNECMMNFGTCRSGGRVQLKHHGKCKEP----------------TCPLKCPSDRNRVCGTNGKTYASLCRLQQDTCRDE-SIVLRHTGPC---------------ANRCRVNKRCGFRYR-PVCGTDSKTYANHCELRKAMCISNGKIRKAHSGRCKKCSRGQPKVRCVSNPCAGAYCPKYPRAQCVANYCGSCNAQFYMRGKRIEDCGTKCSEAC-TREFSPICGSDGRTYGNPCTMAVATCKSKGAISMSYVGPCRMKYY 4727
VCGSDG + C++ +AC + +FK DG C C + CP P CG DG Y+N C+M + G + G+C G CP+ +CD A + VC DG TY+S C QQ C + KH G C +C C+ ++DP CG+D TYG+ C + C G +Q+ G C CP +C + VCG++G TY S C L C + S+ + GPC A +C V RC PVCG+D TY + CELR+A C+ +I +A +G C++ C C C + + + ED C +C + SP+CGSDG TY C + A C+S+ + ++ G CR +
Sbjct: 284 VCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRP-VCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQC-VCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAE------------CGSGGSGSGEDGDCEQEL---CRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPTF 755 HSP 2 Score: 119.398 bits (298), Expect = 1.152e-26 Identity = 122/455 (26.81%), Postives = 166/455 (36.48%), Query Frame = 3
Query: 3564 CPAVYEPVCGSDGQTHSNNCEMEMKACVKSSKIFKMHDGECGKCVKVCPFNYEPQCGTDGKNYDNQCIMQQKTCQTGGKVGLAYEGECGNPACPDSCDSADKEQVCGSDGNTYESFCKLQQKSCATGSVVKFKHFGKCVKCSPI-------------------------CNKMWDPYCGTDDRTYGNECMMNFGTCRSGGRVQLKHHGKCK-EPTCP------LKCPSDRNR----------------VCGTNGKTYASLCRLQQDTCRDE-SIVLRHTGPCAN-----------------------RCRVNKRCGFRYRPVCGTDSKTYANHCELRKAMCISNGKIRKAHSGRCKKCSRGQPKVRCVSNPCAGAYCPKYPRAQCVANYCGSCNAQFYMRGKRIEDCGTKCSEACTREFSPICGSDGRTYGNPCTMAVATCKSKGAISMSYVGPC 4712
CP+V PVCGSD T+SN CE++ C + +I + G CG + C TC G + +G + CP +C A + VCGSDG Y C+L +++CA V K G C C C P CG D TY N+C+M G +Q G+C+ CP C S R R VC +G+TY S C QQ CR + +I +H GPC C + C Y PVCG+D TY + CEL C +I+ A G C +C GQ + GA C + +CV C C P+CGSDG TY + C + V C + ++ ++ GPC
Sbjct: 202 CPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGS--------------------RDPC--SNVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRC--GQCRF--------GALC-EAETGRCV------------------------CPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPC 599 HSP 3 Score: 95.9005 bits (237), Expect = 1.595e-19 Identity = 130/527 (24.67%), Postives = 188/527 (35.67%), Query Frame = 3
Query: 2850 FCGSDGKTYSNEC-LLKVAQCENNKIILQNQGPCVDKDLTPCQNEV----RSAENGP------LLI------GSYKPQCDESGAYKQIQC-HGSTGYCWCVDKKGVKKQGTEKAPGQGQPNCYDDEESN---LSREQR----CMRV-CTFEYDPVCASNRQTMANKCVFNYQKCLDN-SLTIKHTGQCSECPRNVPIVTCAVNPCDTSTCPAFPKARCQGNYCGGCNAEFFVNDKKVDCLIRPEPRSLIKPFAAAGPSVPQCSMICPAVYEPVCGSDGQTHSNNCEMEMKACVKSSKIFKMHDGECGKCVK--------------VCPFN----YEPQCGTDGKNYDNQCIMQQKTCQTGGKVGLAYEGEC----------------GNPACPDSCDSADKEQVCGSDGNTYESFCKLQQKSCATGSVVKFKHFGKCVKCS----------------PICNK---MWD--------------------PYCGTDDRTYGNECMMNFGTCRSGGRVQLKHHGKCKEPT 4130
CGSDG Y EC LL+ A + + GPC PCQ + RS P +L+ P C + G + C G +G +G+ Q QG+ C + N LSR R C RV C Y PVCA + +T + C +C ++ KH G C + P V CA +TC V + + C +C C ++Y+PVCGSDG T+ + CE+E AC +I G C +C + VCP +P CG+DG Y ++C++ C + +A G C G CP C+ VCGSDG TY S C+L++ +C + ++ G C + +C + +WD P CG+D TY EC + C S + + G C+ PT
Sbjct: 284 VCGSDGADYPGECQLLRRACARQENVFKKFDGPC-----DPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGA-----ARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFG----ATC--------------------AVKNGQAAC---------------------ECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCP-RCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPT 754 The following BLAST results are available for this feature:
BLAST of TCONS_00055951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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