TCONS_00055978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055978
Unique NameTCONS_00055978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055978 ID=TCONS_00055978|Name=TCONS_00055978|organism=Clytia hemisphaerica|type=transcript|length=1762bp
CAAATTAAgtgcacccttattgaaactTCGTCCGCGAAAAGACTTGGTAG
AAACACTCCTTCATGAAATGATTCACGCTTTACTGTTTGTCACAGATAAT
AACAAGgATCACGATGGACATGGACCAGAATTTCACAAACACATGTACCG
AATCAATAAAGAGACTGGGACCAACATTTCAgtttatcattcttttcacg
ACGAGgtGGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGT
GTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGC
GCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAG
GAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTaag
aaaagtaaaaagttaGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTC
TGAAAGCAACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAA
CAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGC
ATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGA
TAGTTACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAaactaact
ctaaccctaagaCAAAAAACAATACTTCGAACCATGGAAACCAAAACAAA
GGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAAC
TTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACA
TTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAA
ATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTT
TTCAGGCAACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAA
ACAGTGgacgagaaaattttttgaaacgatTAGAAAATAACATGAAAGGG
AATACTCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTCC
CTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAA
ACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCT
CCGAACCAACCCTCGTTCTCAAGAAATCCTacaacaaaccaaaacaagTC
TCCCTATACTAACAAACAACCACATAACGCACAATCAAATTTAACAAACA
CTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCA
CCGAAAAAGActaaattttcgaaagaaacGCACATGGTTATTTCTTCAGA
CGAAGAGGACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGT
GTCCTATGAGAGTTCCtgaacatcttttgaatgaacacttGGATGAATGC
TTAACTTCTTGACACTTCTACCGATTGAGAAGCTTCAACCCTACCCAGAC
CGCAATTTTAACGAGTTTTGTACAGTATGTGTTGTTGGGACTTCAGTTAT
TTTCGGACCCTCATTCTTtcgtttcaatgtttttttttagtttttttagt
catttttaccAGGGTCATCTTGTATGTAAGATCATCGTTGCCTTACTGCA
AGTATGACTCGTtatattttgtttcattttttactGTGAATTtagaaaac
tgaaaatatttattttttatcccAAAATTATATCAACGATTTCATGAATC
ATAGAGCCTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_266:117022..119644-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055978 ID=TCONS_00055978|Name=TCONS_00055978|organism=Clytia hemisphaerica|type=transcript|length=2623bp|location=Sequence derived from alignment at scaffold_266:117022..119644- (Clytia hemisphaerica)
CAAATTAAGTGCACCCTTATTGAAACTTCGTCCGCGAAAAGACTTGGTAG
AAACACTCCTTGTAAGAATACTCTCCTTGTACAATTCTTCCTCTGTCGGG
ATTACTATTCACGGCCATGTCTGTCTCTGAAAACTTATTAAGTGAACGTA
GTTAAAACTAAATTGAAATTGAATTTAATTGAAACCTTTGTTATTAAATT
CATTTTCGAAAAGCTGGTAAAATTGTTTTTTACTTTTCAGCATGAAATGA
TTCACGCTTTACTGTTTGTCACAGATAATAACAAGGTACTGTTCTGTTCT
TGTTTATTCGTATTTCCGGGCGGGGGGGGGGGGGGGGGGGGGGGGCNAAT
AGCACTTTCTGTTGGTTTCTTTAAAGAAGGTAACACAAATTGGTTTTCCG
TTGGTTAATGTTCTAATAAAAACTGTCGTGTCCATTTTCGAAACCTTGCT
ATCGATTTCGCCCTCGTTAGTTGAATCATAACATGGATCTACATTATGAA
CAAAATGTCACGCCTATCCCGACCTTATTTCCGTAGATATGAGATGCAGA
CCATTCTACACTTTTTCACTTTTCTTTTGTAGGATCACGATGGACATGGA
CCAGAATTTCACAAACACATGTACCGAATCAATAAAGAGACTGGGACCAA
CATTTCAGTATGAATCTTTTCATTATGTTGTGTCGACCATCAAAATTTAT
GCCAATATTTCAGAGATTTTCCATTTTCACGCGCTTTGAAAATTCCTACA
GTGTCTTCTTTCGTGATTTAACCAACAATTAGCTTGTGCGGATGCAAAAT
TGAGTCCAAATTGATATGACAATCTAAAATATTTGACTTTGATTTCATTT
TATCCACTTTTTAGGTTTATCATTCTTTTCACGACGAGGTAAGCAAGATA
TTTGTTTACTATTTGATCTGGATGTCCNTTATCATTCTTTTCACGACGAG
GTAAGCAAGATATTTGTTTACTATTTGATCTGGATGTCATTCGCCCATTA
AAACCTATTGCATGAACTTCAGTGTGTTTTTTTCAAGCATTGCATCGTAA
ATTTATTTTCTTTTAGGTGGATCACCATAGACAACATTGGTGGCGTTGTG
ATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCT
ATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAACA
AAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGA
AGCAATCTAAGAAAAGTAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGT
TCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATCACAAACTG
GTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTA
ACTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACCCG
TGGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAACCAACAAG
CAAAACTAACTCTAACCCTAAGACAAAAAACAATACTTCGAACCATGGAA
ACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGT
GGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACCAA
TGAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCT
ACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACCC
TTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACAAATGACGA
ACCTTCGGGAAACAGTGGACGAGAAAATTTTTTGAAACGATTAGAAAATA
ACATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCATCACAAATT
AGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGATTT
CTCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCACTG
AAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTACAACAAAC
CAAAACAAGTCTCCCTATACTAACAAACAACCACATAACGCACAATCAAA
TTTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTT
CATCAACCTCACCGAAAAAGACTAAATTTTCGAAAGAAACGCACATGGTT
ATTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAATCTTGTGGA
TTGCCCTGCGTGTCCTATGAGAGTTCCTGAACATCTTTTGAATGAACACT
TGGATGAATGCTTAACTTCTTGACACTTCTACCGATTGAGAAGCTTCAAC
CCTACCCAGACCGCAATTTTAACGAGTTTTGTACAGTATGTGTTGTTGGG
ACTTCAGTTATTTTCGGACCCTCATTCTTTCGTTTCAATGTTTTTTTTTA
GTTTTTTTAGTCATTTTTACCAGGGTCATCTTGTATGTAAGATCATCGTT
GCCTTACTGCAAGTATGACTCGTTATATTTTGTTTCATTTTTTACTGTGA
ATTTAGAAAACTGAAAATATTTATTTTTTATCCCAAAATTATATCAACGA
TTTCATGAATCATAGAGCCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055978-exon-scaffold_266-1575043694:119584..119644TCONS_00055978-exon-scaffold_266-1575043694:119584..119644Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1575043694:119360..119404TCONS_00055978-exon-scaffold_266-1575043694:119360..119404Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1575043694:118988..119062TCONS_00055978-exon-scaffold_266-1575043694:118988..119062Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1575043694:118757..118780TCONS_00055978-exon-scaffold_266-1575043694:118757..118780Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1575043694:117022..118578TCONS_00055978-exon-scaffold_266-1575043694:117022..118578Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1510915933:119584..119644TCONS_00055978-exon-scaffold_266-1510915933:119584..119644Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1510915933:119360..119404TCONS_00055978-exon-scaffold_266-1510915933:119360..119404Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1510915933:118988..119062TCONS_00055978-exon-scaffold_266-1510915933:118988..119062Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1510915933:118757..118780TCONS_00055978-exon-scaffold_266-1510915933:118757..118780Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1510915933:117022..118578TCONS_00055978-exon-scaffold_266-1510915933:117022..118578Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1491911889:119584..119644TCONS_00055978-exon-scaffold_266-1491911889:119584..119644Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1491911889:119360..119404TCONS_00055978-exon-scaffold_266-1491911889:119360..119404Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1491911889:118988..119062TCONS_00055978-exon-scaffold_266-1491911889:118988..119062Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1491911889:118757..118780TCONS_00055978-exon-scaffold_266-1491911889:118757..118780Clytia hemisphaericaexon
TCONS_00055978-exon-scaffold_266-1491911889:117022..118578TCONS_00055978-exon-scaffold_266-1491911889:117022..118578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:117022..119644 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.42946	0.308969	2.17273	0	0	0	1.98173	0	0	0	0	1.67272e-07	0.0572745	0	0.0423415	0	1.7503e-09	0.00846029	0	0	0.739216	0.0931278	0	0	0	0
Blast
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BLAST of TCONS_00055978 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 5.194e-57
Identity = 85/122 (69.67%), Postives = 102/122 (83.61%), Query Frame = 2 
Query:    2 KLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNKDHDGHGPEFHKHMYRINKETGTNISVYHSFHDEVDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKI 367
            +LS PLLKLRPRKDLVETLLHEMIHA LFVT+N+KD +GHGPEF KHM+RIN  TG NI+VYH+FHDEVD +R+HWWRC+GPC  RPP++G V+RA NR PS  D WW +H++ CGG + KI
Sbjct:   91 RLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKI 212
The following BLAST results are available for this feature:
BLAST of TCONS_00055978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRTN5.194e-5769.67SprT-like domain-containing protein Spartan OS=Hom... [more]
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