TCONS_00055979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055979
Unique NameTCONS_00055979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055979 ID=TCONS_00055979|Name=TCONS_00055979|organism=Clytia hemisphaerica|type=transcript|length=1924bp
ACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACCAAATG
TTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGATGCTG
GCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTATGTGCTGGTTT
GTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCATCAAATTAAgtgcac
ccttattgaaactTCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTCAT
GAAATGATTCACGCTTTACTGTTTGTCACAGATAATAACAAGgATCACGA
TGGACATGGACCAGAATTTCACAAACACATGTACCGAATCAATAAAGAGA
CTGGGACCAACATTTCAgtGGATCACCATAGACAACATTGGTGGCGTTGT
GATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGC
TATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAAC
AAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTG
AAGCAATCTaagaaaagtaaaaagttaGAAGAAACTGGACAAAAGCTTGG
TTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATCACAAACT
GGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCT
AACTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACCC
GTGGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAACCAACAA
GCAAaactaactctaaccctaagaCAAAAAACAATACTTCGAACCATGGA
AACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGG
TGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACCA
ATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATC
TACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACC
CTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACAAATGACG
AACCTTCGGGAAACAGTGgacgagaaaattttttgaaacgatTAGAAAAT
AACATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCATCACAAAT
TAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGATT
TCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCACT
GAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTacaacaaa
ccaaaacaagTCTCCCTATACTAACAAACAACCACATAACGCACAATCAA
ATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCT
TCATCAACCTCACCGAAAAAGActaaattttcgaaagaaacGCACATGGT
TATTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAATCTTGTGG
ATTGCCCTGCGTGTCCTATGAGAGTTCCtgaacatcttttgaatgaacac
ttGGATGAATGCTTAACTTCTTGACACTTCTACCGATTGAGAAGCTTCAA
CCCTACCCAGACCGCAATTTTAACGAGTTTTGTACAGTATGTGTTGTTGG
GACTTCAGTTATTTTCGGACCCTCATTCTTtcgtttcaatgttttttttt
agtttttttagtcatttttaccAGGGTCATCTTGTATGTAAGATCATCGT
TGCCTTACTGCAAGTATGACTCGTtatattttgtttcattttttactGTG
AATTtagaaaactgaaaatatttattttttatcccAAAATTATATCAACG
ATTTCATGAATCATAGAGCCTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_266:117022..122026-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055979 ID=TCONS_00055979|Name=TCONS_00055979|organism=Clytia hemisphaerica|type=transcript|length=5005bp|location=Sequence derived from alignment at scaffold_266:117022..122026- (Clytia hemisphaerica)
ACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACCAAATG
TTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGATGCTG
GCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTAAGATTTGAT
CAATCTTCCCTTGCTCATTTCTTTTTTTCCCAGATCATTTTTAATAAGTA
TAACGGAAAAAACTTTTTATGTGACTGCCACAATGTTTGATTAAAATTAA
CAGAGTGGATAGTGTATTTTACGGTGTGCAAACCTATGACATTCTAAGAT
TTTGAATAATGTCCAACTGATACCGACACAAGGATCTATTTTATCCAAAT
ATGTCGACACGGGACTTGAAATGTTAAGCGAAAATAAAGTTACATTTACT
TTCATTTGTTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTTTGAAG
CTAATTCCCTTCCTTTGTCTGNGTTTACTTTCATTTGTTGTCTGGAAGAG
GTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTCACTTCCTTTGTCTG
AAGGTTTCTTCTGACAAAAAGCTCAGTCCTTCTTGAATTTGAGAGTTTTC
AACAAAGATAACAAGACCTACATTATCTAAACAAATGAATGTGCTTCTAC
TTATGGCCAGGTTATGAACAGTACCTCATTTGTCATTCCGTAAAAGTTCG
TTGACTTATCGGACGTGTTTAAACGAAAAGCAGTAGGTCAGGTGACCTAC
TTAATCTGTTCGGTTTGACGATCCAAATAATCATTATCCTCTACAGAGTA
TCGCTTTTTTGATGTGGAAACTTTTGAGGTTTTTTGGAAATTGACGTTTG
TCTGGTCGTGGTTTGACCTGGCATCTGGGGAAGCTCTATCTGGGTGTAAT
GAAGGTTTCAAAATGTGAAATCAATATATGTTTTTAGTGGTTTTCGCACA
TGTTACTCCCATCTTGCTGACTATACTAATATATTAGTTTTATTATGTGA
CTGGAATTTCGCACATGCTTCTTCTATTCTATATTGCTGACTACAATTTA
TGTATATATGGCTACAATAATTTTCAAATTACGAAATCATACAGCTTGGA
TATCATTACTCTCTTAAAGATTTGGCCATTAGAAAATATCTTCTCAGTTA
TTCATCAGAAAAATGCTTCATCCCTCTTTCCTTAGATGTGCTGGTTTGTG
CTACTATGAGCGGCGTGGCAAGTGTTGCTCCANATTTACTTTCATTTGTT
GTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTCCCT
TCCTTTGTCTGAAAGTTTCTTTTGACAAAAAGCTCAGTCCTTTTTGAATT
TGAGAGTTTCCGACAAAGATAATAAGACCAACATGATCTAAACAAATAAA
TGTGCTTCTGTTTATAGCCAGGTTATGAACAGTACCTCATTTGTCATTCC
GTAAAAGTTCGTTGACTTATCAGACGTGTTTAAAGTGGGGGCGTACGGTT
TTTCGGAATTGCGGAAATCGACCCTTTTTTCTTCGGTATTTCGGAATTCT
AAAATTGTTTCGGAATGGAAAATCCATAATTTTTTGCTTCGAAATTTCGG
TATTATAAAGTTTTTATCCCCTTTTTTCGGAATTCATACACGAAAAATCA
AATTTGATGAAAAATTAGTCAAAACGAAGAAAAATACCCAAAAAAAATCG
GTATCGGAATTGCAAGTACTCTTTTACGGAATTCCGGAAACTTTGGCAAA
GTTATTCGGTATTTCGGCAATCGCAAAACCCGTACGCCCCCCCCTTTAAA
CGAAAAGCAGTAGGTCAGGTGACCTACTTTATTTGTTCATAAATTCGATT
GTTGACGATCCAAATAATCATTATCCTCTACAGAGTATCGCTTTTTGATG
TGGAAACTTTTGAGGTTTTTTGGAATGCGATGTTTGTCTGGTCGTGGTTT
GACCTGCCATCTGGGGAAGCTCTATTTGGGTGTAATGAAGGTTTCAAAAT
GTGAAACCAATATGTTTTTAGTGGTTTTCGCACATGTTACTCCCATCTTG
CTGACTATACTAATATATTTGTTTTATTATGTGACTGGAATTTCGCACAT
GCTTCTTCTATTCTATATTGCTGGCTACAATTTATGTATATATGGCTACA
ATAATTTTCAAATTACGAAATCATACAGCTTGGATATTATTACTCTCTTA
AAGATTTGGCCATTAGAAAATATTTTCTCAGTTATTCATCAGAAAAATGC
TTCATCCCTCTTTCCTTAGATGTGCTGGTTTGTGCTACTATGAGCGGCGT
GGCAAGTGTTGCTCCATCAAATTAAGTGCACCCTTATTGAAACTTCGTCC
GCGAAAAGACTTGGTAGAAACACTCCTTGNATCAAATTAAGTGCACCCTT
ATTGAAACTTCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTGTAAGAA
TACTCTCCTTGTACAATTCTTCCTCTGTCGGGATTACTATTCACGGCCAT
GTCTGTCTCTGAAAACTTATTAAGTGAACGTAGTTAAAACTAAATTGAAA
TTGAATTTAATTGAAACCTTTGTTATTAAATTCATTTTCGAAAAGCTGGT
AAAATTGTTTTTTACTTTTCAGCATGAAATGATTCACGCTTTACTGTTTG
TCACAGATAATAACAAGGTACTGTTCTGTTCTTGTTTATTCGTATTTCCG
GGCGGGGGGGGGGGGGGGGGGGGGGGGCNAATAGCACTTTCTGTTGGTTT
CTTTAAAGAAGGTAACACAAATTGGTTTTCCGTTGGTTAATGTTCTAATA
AAAACTGTCGTGTCCATTTTCGAAACCTTGCTATCGATTTCGCCCTCGTT
AGTTGAATCATAACATGGATCTACATTATGAACAAAATGTCACGCCTATC
CCGACCTTATTTCCGTAGATATGAGATGCAGACCATTCTACACTTTTTCA
CTTTTCTTTTGTAGGATCACGATGGACATGGACCAGAATTTCACAAACAC
ATGTACCGAATCAATAAAGAGACTGGGACCAACATTTCAGTATGAATCTT
TTCATTATGTTGTGTCGACCATCAAAATTTATGCCAATATTTCAGAGATT
TTCCATTTTCACGCGCTTTGAAAATTCCTACAGTGTCTTCTTTCGTGATT
TAACCAACAATTAGCTTGTGCGGATGCAAAATTGAGTCCAAATTGATATG
ACAATCTAAAATATTTGACTTTGATTTCATTTTATCCACTTTTTAGGTTT
ATCATTCTTTTCACGACGAGGTAAGCAAGATATTTGTTTACTATTTGATC
TGGATGTCCNTTATCATTCTTTTCACGACGAGGTAAGCAAGATATTTGTT
TACTATTTGATCTGGATGTCATTCGCCCATTAAAACCTATTGCATGAACT
TCAGTGTGTTTTTTTCAAGCATTGCATCGTAAATTTATTTTCTTTTAGGT
GGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGTGTTAAAC
GCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGCCCTCT
CCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAGGAGCTTT
CACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTAAGAAAAGTA
AAAAGTTAGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTGAAAGC
AACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAACAGATTC
TTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGCATAGATT
GTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGATAGTTAC
ACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAAACTAACTCTAACCC
TAAGACAAAAAACAATACTTCGAACCATGGAAACCAAAACAAAGGTAAAT
ACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTTCAACT
ATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACATTTATCG
GAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAAATGTCTG
CTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTTCAGGC
AACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAAACAGTGG
ACGAGAAAATTTTTTGAAACGATTAGAAAATAACATGAAAGGGAATACTC
AAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTCCCTCTTCA
AACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAAACCAAAA
TAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCCGAACC
AACCCTCGTTCTCAAGAAATCCTACAACAAACCAAAACAAGTCTCCCTAT
ACTAACAAACAACCACATAACGCACAATCAAATTTAACAAACACTAAACG
AAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCACCGAAAA
AGACTAAATTTTCGAAAGAAACGCACATGGTTATTTCTTCAGACGAAGAG
GACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGTGTCCTAT
GAGAGTTCCTGAACATCTTTTGAATGAACACTTGGATGAATGCTTAACTT
CTTGACACTTCTACCGATTGAGAAGCTTCAACCCTACCCAGACCGCAATT
TTAACGAGTTTTGTACAGTATGTGTTGTTGGGACTTCAGTTATTTTCGGA
CCCTCATTCTTTCGTTTCAATGTTTTTTTTTAGTTTTTTTAGTCATTTTT
ACCAGGGTCATCTTGTATGTAAGATCATCGTTGCCTTACTGCAAGTATGA
CTCGTTATATTTTGTTTCATTTTTTACTGTGAATTTAGAAAACTGAAAAT
ATTTATTTTTTATCCCAAAATTATATCAACGATTTCATGAATCATAGAGC
CTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055979-exon-scaffold_266-1575043694:121889..122026TCONS_00055979-exon-scaffold_266-1575043694:121889..122026Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1575043694:119649..119757TCONS_00055979-exon-scaffold_266-1575043694:119649..119757Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1575043694:119360..119404TCONS_00055979-exon-scaffold_266-1575043694:119360..119404Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1575043694:118988..119062TCONS_00055979-exon-scaffold_266-1575043694:118988..119062Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1575043694:117022..118578TCONS_00055979-exon-scaffold_266-1575043694:117022..118578Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1510915933:121889..122026TCONS_00055979-exon-scaffold_266-1510915933:121889..122026Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1510915933:119649..119757TCONS_00055979-exon-scaffold_266-1510915933:119649..119757Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1510915933:119360..119404TCONS_00055979-exon-scaffold_266-1510915933:119360..119404Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1510915933:118988..119062TCONS_00055979-exon-scaffold_266-1510915933:118988..119062Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1510915933:117022..118578TCONS_00055979-exon-scaffold_266-1510915933:117022..118578Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1491911889:121889..122026TCONS_00055979-exon-scaffold_266-1491911889:121889..122026Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1491911889:119649..119757TCONS_00055979-exon-scaffold_266-1491911889:119649..119757Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1491911889:119360..119404TCONS_00055979-exon-scaffold_266-1491911889:119360..119404Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1491911889:118988..119062TCONS_00055979-exon-scaffold_266-1491911889:118988..119062Clytia hemisphaericaexon
TCONS_00055979-exon-scaffold_266-1491911889:117022..118578TCONS_00055979-exon-scaffold_266-1491911889:117022..118578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:117022..122026 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.21989e-07	0	0.0331966	0	0	1.97165e-07	0	5.3207e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	6.14133e-10	0	0	0	0
Blast
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BLAST of TCONS_00055979 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 1.426e-78
Identity = 116/184 (63.04%), Postives = 141/184 (76.63%), Query Frame = 2 
Query:    2 LSIVDPSWELIDPVPNVHELFVQFNAAYFDGMLASVSVQWSPRMTLCAGLCYYERRGKCCSIKLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNKDHDGHGPEFHKHMYRINKETGTNIS--------VDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKI 529
            LS+VD SWEL+DP P++  LFVQFN  +F G L +V V+WS RMTLCAG+C YE +G  CSI+LS PLLKLRPRKDLVETLLHEMIHA LFVT+N+KD +GHGPEF KHM+RIN  TG NI+        VD +R+HWWRC+GPC  RPP++G V+RA NR PS  D WW +H++ CGG + KI
Sbjct:   29 LSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKI 212
The following BLAST results are available for this feature:
BLAST of TCONS_00055979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRTN1.426e-7863.04SprT-like domain-containing protein Spartan OS=Hom... [more]
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