TCONS_00055981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055981
Unique NameTCONS_00055981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2081

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055981 ID=TCONS_00055981|Name=TCONS_00055981|organism=Clytia hemisphaerica|type=transcript|length=2081bp
TTCAggagaaaaaaacacaaaataaaaatagaaaaaaaacacataggATG
GAGAATGAAGATGAAGACTTTGCATTGGCTTTGAAACTGTTCACTGAACT
AAATGAGGGCGAAGGAGAGCAATCACAGTCCGTAAAAGGAGGTAAACCTG
ATGAAAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTA
CCAAATATTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGG
GATGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTATGTG
CTGGTTTGTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCATCAAATTA
AgtgcacccttattgaaactTCGTCCGCGAAAAGACTTGGTAGAAACACT
CCTTCATGAAATGATTCACGCTTTACTGTTTGTCACAGATAATAACAAGg
ATCACGATGGACATGGACCAGAATTTCACAAACACATGTACCGAATCAAT
AAAGAGACTGGGACCAACATTTCAgtGGATCACCATAGACAACATTGGTG
GCGTTGTGATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCA
GGCGTGCTATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGAC
CACAAACAAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAA
ACCGGTGAAGCAATCTaagaaaagtaaaaagttaGAAGAAACTGGACAAA
AGCTTGGTTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATC
ACAAACTGGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAA
TTCATCTAACTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGA
TAAACCCGTGGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAA
CCAACAAGCAAaactaactctaaccctaagaCAAAAAACAATACTTCGAA
CCATGGAAACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTA
AAGGAGGTGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCT
CCGACCAATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAG
TAATATCTACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAA
AGCAACCCTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACA
AATGACGAACCTTCGGGAAACAGTGgacgagaaaattttttgaaacgatT
AGAAAATAACATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCAT
CACAAATTAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGAT
TCTGATTTCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGA
AACCACTGAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTa
caacaaaccaaaacaagTCTCCCTATACTAACAAACAACCACATAACGCA
CAATCAAATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACA
AAACTCTTCATCAACCTCACCGAAAAAGActaaattttcgaaagaaacGC
ACATGGTTATTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAAT
CTTGTGGATTGCCCTGCGTGTCCTATGAGAGTTCCtgaacatcttttgaa
tgaacacttGGATGAATGCTTAACTTCTTGACACTTCTACCGATTGAGAA
GCTTCAACCCTACCCAGACCGCAATTTTAACGAGTTTTGTACAGTATGTG
TTGTTGGGACTTCAGTTATTTTCGGACCCTCATTCTTtcgtttcaatgtt
tttttttagtttttttagtcatttttaccAGGGTCATCTTGTATGTAAGA
TCATCGTTGCCTTACTGCAAGTATGACTCGTtatattttgtttcattttt
tactGTGAATTtagaaaactgaaaatatttattttttatcccAAAATTAT
ATCAACGATTTCATGAATCATAGAGCCTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_266:117022..122329-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055981 ID=TCONS_00055981|Name=TCONS_00055981|organism=Clytia hemisphaerica|type=transcript|length=5308bp|location=Sequence derived from alignment at scaffold_266:117022..122329- (Clytia hemisphaerica)
TTCAGGAGAAAAAAACACAAAATAAAAATAGAAAAAAAACACATAGGATG
GAGAATGAAGATGAAGACTTTGCATTGGCTTTGAAACTGTTCACTGAACT
AAATGAGGGCGAAGGAGAGCAATCACAGTCCGTAAAAGGAGGTAAACCTG
ATGAAAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTA
CCAAATATTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGG
GATGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTAAN
CAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACCAA
ATGTTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGATG
CTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTAAGATTT
GATCAATCTTCCCTTGCTCATTTCTTTTTTTCCCAGATCATTTTTAATAA
GTATAACGGAAAAAACTTTTTATGTGACTGCCACAATGTTTGATTAAAAT
TAACAGAGTGGATAGTGTATTTTACGGTGTGCAAACCTATGACATTCTAA
GATTTTGAATAATGTCCAACTGATACCGACACAAGGATCTATTTTATCCA
AATATGTCGACACGGGACTTGAAATGTTAAGCGAAAATAAAGTTACATTT
ACTTTCATTTGTTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTTTG
AAGCTAATTCCCTTCCTTTGTCTGNGTTTACTTTCATTTGTTGTCTGGAA
GAGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTCACTTCCTTTGT
CTGAAGGTTTCTTCTGACAAAAAGCTCAGTCCTTCTTGAATTTGAGAGTT
TTCAACAAAGATAACAAGACCTACATTATCTAAACAAATGAATGTGCTTC
TACTTATGGCCAGGTTATGAACAGTACCTCATTTGTCATTCCGTAAAAGT
TCGTTGACTTATCGGACGTGTTTAAACGAAAAGCAGTAGGTCAGGTGACC
TACTTAATCTGTTCGGTTTGACGATCCAAATAATCATTATCCTCTACAGA
GTATCGCTTTTTTGATGTGGAAACTTTTGAGGTTTTTTGGAAATTGACGT
TTGTCTGGTCGTGGTTTGACCTGGCATCTGGGGAAGCTCTATCTGGGTGT
AATGAAGGTTTCAAAATGTGAAATCAATATATGTTTTTAGTGGTTTTCGC
ACATGTTACTCCCATCTTGCTGACTATACTAATATATTAGTTTTATTATG
TGACTGGAATTTCGCACATGCTTCTTCTATTCTATATTGCTGACTACAAT
TTATGTATATATGGCTACAATAATTTTCAAATTACGAAATCATACAGCTT
GGATATCATTACTCTCTTAAAGATTTGGCCATTAGAAAATATCTTCTCAG
TTATTCATCAGAAAAATGCTTCATCCCTCTTTCCTTAGATGTGCTGGTTT
GTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCANATTTACTTTCATTT
GTTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTC
CCTTCCTTTGTCTGAAAGTTTCTTTTGACAAAAAGCTCAGTCCTTTTTGA
ATTTGAGAGTTTCCGACAAAGATAATAAGACCAACATGATCTAAACAAAT
AAATGTGCTTCTGTTTATAGCCAGGTTATGAACAGTACCTCATTTGTCAT
TCCGTAAAAGTTCGTTGACTTATCAGACGTGTTTAAAGTGGGGGCGTACG
GTTTTTCGGAATTGCGGAAATCGACCCTTTTTTCTTCGGTATTTCGGAAT
TCTAAAATTGTTTCGGAATGGAAAATCCATAATTTTTTGCTTCGAAATTT
CGGTATTATAAAGTTTTTATCCCCTTTTTTCGGAATTCATACACGAAAAA
TCAAATTTGATGAAAAATTAGTCAAAACGAAGAAAAATACCCAAAAAAAA
TCGGTATCGGAATTGCAAGTACTCTTTTACGGAATTCCGGAAACTTTGGC
AAAGTTATTCGGTATTTCGGCAATCGCAAAACCCGTACGCCCCCCCCTTT
AAACGAAAAGCAGTAGGTCAGGTGACCTACTTTATTTGTTCATAAATTCG
ATTGTTGACGATCCAAATAATCATTATCCTCTACAGAGTATCGCTTTTTG
ATGTGGAAACTTTTGAGGTTTTTTGGAATGCGATGTTTGTCTGGTCGTGG
TTTGACCTGCCATCTGGGGAAGCTCTATTTGGGTGTAATGAAGGTTTCAA
AATGTGAAACCAATATGTTTTTAGTGGTTTTCGCACATGTTACTCCCATC
TTGCTGACTATACTAATATATTTGTTTTATTATGTGACTGGAATTTCGCA
CATGCTTCTTCTATTCTATATTGCTGGCTACAATTTATGTATATATGGCT
ACAATAATTTTCAAATTACGAAATCATACAGCTTGGATATTATTACTCTC
TTAAAGATTTGGCCATTAGAAAATATTTTCTCAGTTATTCATCAGAAAAA
TGCTTCATCCCTCTTTCCTTAGATGTGCTGGTTTGTGCTACTATGAGCGG
CGTGGCAAGTGTTGCTCCATCAAATTAAGTGCACCCTTATTGAAACTTCG
TCCGCGAAAAGACTTGGTAGAAACACTCCTTGNATCAAATTAAGTGCACC
CTTATTGAAACTTCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTGTAA
GAATACTCTCCTTGTACAATTCTTCCTCTGTCGGGATTACTATTCACGGC
CATGTCTGTCTCTGAAAACTTATTAAGTGAACGTAGTTAAAACTAAATTG
AAATTGAATTTAATTGAAACCTTTGTTATTAAATTCATTTTCGAAAAGCT
GGTAAAATTGTTTTTTACTTTTCAGCATGAAATGATTCACGCTTTACTGT
TTGTCACAGATAATAACAAGGTACTGTTCTGTTCTTGTTTATTCGTATTT
CCGGGCGGGGGGGGGGGGGGGGGGGGGGGGCNAATAGCACTTTCTGTTGG
TTTCTTTAAAGAAGGTAACACAAATTGGTTTTCCGTTGGTTAATGTTCTA
ATAAAAACTGTCGTGTCCATTTTCGAAACCTTGCTATCGATTTCGCCCTC
GTTAGTTGAATCATAACATGGATCTACATTATGAACAAAATGTCACGCCT
ATCCCGACCTTATTTCCGTAGATATGAGATGCAGACCATTCTACACTTTT
TCACTTTTCTTTTGTAGGATCACGATGGACATGGACCAGAATTTCACAAA
CACATGTACCGAATCAATAAAGAGACTGGGACCAACATTTCAGTATGAAT
CTTTTCATTATGTTGTGTCGACCATCAAAATTTATGCCAATATTTCAGAG
ATTTTCCATTTTCACGCGCTTTGAAAATTCCTACAGTGTCTTCTTTCGTG
ATTTAACCAACAATTAGCTTGTGCGGATGCAAAATTGAGTCCAAATTGAT
ATGACAATCTAAAATATTTGACTTTGATTTCATTTTATCCACTTTTTAGG
TTTATCATTCTTTTCACGACGAGGTAAGCAAGATATTTGTTTACTATTTG
ATCTGGATGTCCNTTATCATTCTTTTCACGACGAGGTAAGCAAGATATTT
GTTTACTATTTGATCTGGATGTCATTCGCCCATTAAAACCTATTGCATGA
ACTTCAGTGTGTTTTTTTCAAGCATTGCATCGTAAATTTATTTTCTTTTA
GGTGGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGTGTTA
AACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGCCC
TCTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAGGAGC
TTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTAAGAAAA
GTAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTGAA
AGCAACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAACAGA
TTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGCATAG
ATTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGATAGT
TACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAAACTAACTCTAA
CCCTAAGACAAAAAACAATACTTCGAACCATGGAAACCAAAACAAAGGTA
AATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTTCA
ACTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACATTTA
TCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAAATGT
CTGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTTCA
GGCAACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAAACAG
TGGACGAGAAAATTTTTTGAAACGATTAGAAAATAACATGAAAGGGAATA
CTCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTCCCTCT
TCAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAAACCA
AAATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCCGA
ACCAACCCTCGTTCTCAAGAAATCCTACAACAAACCAAAACAAGTCTCCC
TATACTAACAAACAACCACATAACGCACAATCAAATTTAACAAACACTAA
ACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCACCGA
AAAAGACTAAATTTTCGAAAGAAACGCACATGGTTATTTCTTCAGACGAA
GAGGACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGTGTCC
TATGAGAGTTCCTGAACATCTTTTGAATGAACACTTGGATGAATGCTTAA
CTTCTTGACACTTCTACCGATTGAGAAGCTTCAACCCTACCCAGACCGCA
ATTTTAACGAGTTTTGTACAGTATGTGTTGTTGGGACTTCAGTTATTTTC
GGACCCTCATTCTTTCGTTTCAATGTTTTTTTTTAGTTTTTTTAGTCATT
TTTACCAGGGTCATCTTGTATGTAAGATCATCGTTGCCTTACTGCAAGTA
TGACTCGTTATATTTTGTTTCATTTTTTACTGTGAATTTAGAAAACTGAA
AATATTTATTTTTTATCCCAAAATTATATCAACGATTTCATGAATCATAG
AGCCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055981-exon-scaffold_266-1575043694:122035..122329TCONS_00055981-exon-scaffold_266-1575043694:122035..122329Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1575043694:119649..119757TCONS_00055981-exon-scaffold_266-1575043694:119649..119757Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1575043694:119360..119404TCONS_00055981-exon-scaffold_266-1575043694:119360..119404Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1575043694:118988..119062TCONS_00055981-exon-scaffold_266-1575043694:118988..119062Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1575043694:117022..118578TCONS_00055981-exon-scaffold_266-1575043694:117022..118578Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1510915933:122035..122329TCONS_00055981-exon-scaffold_266-1510915933:122035..122329Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1510915933:119649..119757TCONS_00055981-exon-scaffold_266-1510915933:119649..119757Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1510915933:119360..119404TCONS_00055981-exon-scaffold_266-1510915933:119360..119404Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1510915933:118988..119062TCONS_00055981-exon-scaffold_266-1510915933:118988..119062Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1510915933:117022..118578TCONS_00055981-exon-scaffold_266-1510915933:117022..118578Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1491911889:122035..122329TCONS_00055981-exon-scaffold_266-1491911889:122035..122329Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1491911889:119649..119757TCONS_00055981-exon-scaffold_266-1491911889:119649..119757Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1491911889:119360..119404TCONS_00055981-exon-scaffold_266-1491911889:119360..119404Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1491911889:118988..119062TCONS_00055981-exon-scaffold_266-1491911889:118988..119062Clytia hemisphaericaexon
TCONS_00055981-exon-scaffold_266-1491911889:117022..118578TCONS_00055981-exon-scaffold_266-1491911889:117022..118578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:117022..122329 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.106362	0	0	8.27869e-06	0	1.15595e-06	0	0	6.91604e-08	0	1.22924e-05	0	0	2.05338e-08	0	0	8.58788e-08	0	0	0	0	1.05571	0	0
Blast
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BLAST of TCONS_00055981 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 1.936e-83
Identity = 127/217 (58.53%), Postives = 156/217 (71.89%), Query Frame = 3 
Query:   60 DEDFALALKLFTELNEGEGEQSQSVKGGKPDEKLSIVDPSWELIDPVPNIHELFVQFNAAYFDGMLASVSVQWSPRMTLCAGLCYYERRGKCCSIKLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNKDHDGHGPEFHKHMYRINKETGTNIS--------VDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKI 686
            D+D  LAL+L  E N  E E+  +       E LS+VD SWEL+DP P++  LFVQFN  +F G L +V V+WS RMTLCAG+C YE +G  CSI+LS PLLKLRPRKDLVETLLHEMIHA LFVT+N+KD +GHGPEF KHM+RIN  TG NI+        VD +R+HWWRC+GPC  RPP++G V+RA NR PS  D WW +H++ CGG + KI
Sbjct:    2 DDDLMLALRLQEEWNLQEAERDHA------QESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKI 212
The following BLAST results are available for this feature:
BLAST of TCONS_00055981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRTN1.936e-8358.53SprT-like domain-containing protein Spartan OS=Hom... [more]
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