TCONS_00055983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055983
Unique NameTCONS_00055983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055983 ID=TCONS_00055983|Name=TCONS_00055983|organism=Clytia hemisphaerica|type=transcript|length=344bp
GTTTCAggagaaaaaaacacaaaataaaaatagaaaaaaaacacataggA
TGGAGAATGAAGATGAAGACTTTGCATTGGCTTTGAAACTGTTCACTGAA
CTAAATGAGGGCGAAGGAGAGCAATCACAGTCCGTAAAAGGAGGTAAACC
TGATGAAAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTG
TACCAAATATTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGAT
GGGATGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTATG
TGCTGGTTTGTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCA
Run BLAST on NCBI

transcript from alignment at scaffold_266:120795..122331-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055983 ID=TCONS_00055983|Name=TCONS_00055983|organism=Clytia hemisphaerica|type=transcript|length=1537bp|location=Sequence derived from alignment at scaffold_266:120795..122331- (Clytia hemisphaerica)
GTTTCAGGAGAAAAAAACACAAAATAAAAATAGAAAAAAAACACATAGGA
TGGAGAATGAAGATGAAGACTTTGCATTGGCTTTGAAACTGTTCACTGAA
CTAAATGAGGGCGAAGGAGAGCAATCACAGTCCGTAAAAGGAGGTAAACC
TGATGAAAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTG
TACCAAATATTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGAT
GGGATGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTA
ANCAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACC
AAATGTTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGA
TGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTAAGAT
TTGATCAATCTTCCCTTGCTCATTTCTTTTTTTCCCAGATCATTTTTAAT
AAGTATAACGGAAAAAACTTTTTATGTGACTGCCACAATGTTTGATTAAA
ATTAACAGAGTGGATAGTGTATTTTACGGTGTGCAAACCTATGACATTCT
AAGATTTTGAATAATGTCCAACTGATACCGACACAAGGATCTATTTTATC
CAAATATGTCGACACGGGACTTGAAATGTTAAGCGAAAATAAAGTTACAT
TTACTTTCATTTGTTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTT
TGAAGCTAATTCCCTTCCTTTGTCTGNGTTTACTTTCATTTGTTGTCTGG
AAGAGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTCACTTCCTTT
GTCTGAAGGTTTCTTCTGACAAAAAGCTCAGTCCTTCTTGAATTTGAGAG
TTTTCAACAAAGATAACAAGACCTACATTATCTAAACAAATGAATGTGCT
TCTACTTATGGCCAGGTTATGAACAGTACCTCATTTGTCATTCCGTAAAA
GTTCGTTGACTTATCGGACGTGTTTAAACGAAAAGCAGTAGGTCAGGTGA
CCTACTTAATCTGTTCGGTTTGACGATCCAAATAATCATTATCCTCTACA
GAGTATCGCTTTTTTGATGTGGAAACTTTTGAGGTTTTTTGGAAATTGAC
GTTTGTCTGGTCGTGGTTTGACCTGGCATCTGGGGAAGCTCTATCTGGGT
GTAATGAAGGTTTCAAAATGTGAAATCAATATATGTTTTTAGTGGTTTTC
GCACATGTTACTCCCATCTTGCTGACTATACTAATATATTAGTTTTATTA
TGTGACTGGAATTTCGCACATGCTTCTTCTATTCTATATTGCTGACTACA
ATTTATGTATATATGGCTACAATAATTTTCAAATTACGAAATCATACAGC
TTGGATATCATTACTCTCTTAAAGATTTGGCCATTAGAAAATATCTTCTC
AGTTATTCATCAGAAAAATGCTTCATCCCTCTTTCCTTAGATGTGCTGGT
TTGTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055983-exon-scaffold_266-1575043694:122035..122331TCONS_00055983-exon-scaffold_266-1575043694:122035..122331Clytia hemisphaericaexon
TCONS_00055983-exon-scaffold_266-1575043694:120795..120841TCONS_00055983-exon-scaffold_266-1575043694:120795..120841Clytia hemisphaericaexon
TCONS_00055983-exon-scaffold_266-1510915933:122035..122331TCONS_00055983-exon-scaffold_266-1510915933:122035..122331Clytia hemisphaericaexon
TCONS_00055983-exon-scaffold_266-1510915933:120795..120841TCONS_00055983-exon-scaffold_266-1510915933:120795..120841Clytia hemisphaericaexon
TCONS_00055983-exon-scaffold_266-1491911889:122035..122331TCONS_00055983-exon-scaffold_266-1491911889:122035..122331Clytia hemisphaericaexon
TCONS_00055983-exon-scaffold_266-1491911889:120795..120841TCONS_00055983-exon-scaffold_266-1491911889:120795..120841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:120795..122331 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.4928	11.9275	9.49183	16.3936	2.12638	3.0418	4.01775	0.241456	1.63001	2.51283	9.28933	1.89333	1.37654	3.94345	3.52189	3.10249	4.92998	2.57693	2.29921	0.642846	0.250758	2.3657	6.52106	7.66843	4.79661	2.01452	0	1.97279	6.25585	9.03906
Blast
[Close]
BLAST of TCONS_00055983 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 6.866e-25
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 2 
Query:   62 DEDFALALKLFTELNEGEGEQSQSVKGGKPDEKLSIVDPSWELIDPVPNIHELFVQFNAAYFDGMLASVSVQWSPRMTLCAGLCYYERRGKCCS 343
            D+D  LAL+L  E N  E E+  +       E LS+VD SWEL+DP P++  LFVQFN  +F G L +V V+WS RMTLCAG+C YE +G  CS
Sbjct:    2 DDDLMLALRLQEEWNLQEAERDHA------QESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYEGKGGMCS 89
The following BLAST results are available for this feature:
BLAST of TCONS_00055983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRTN6.866e-2551.06SprT-like domain-containing protein Spartan OS=Hom... [more]
back to top