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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055991 ID=TCONS_00055991|Name=TCONS_00055991|organism=Clytia hemisphaerica|type=transcript|length=3941bpRun BLAST on NCBI protein sequence of TCONS_00055991-protein >TCONS_00055991-protein ID=TCONS_00055991-protein|Name=TCONS_00055991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp NICLGPCVRPRVKRVFSLWSFYKQARSKMATTLREKQIESLKRMLNLNEPRun BLAST on NCBI transcript from alignment at scaffold_266:219839..243954- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055991 ID=TCONS_00055991|Name=TCONS_00055991|organism=Clytia hemisphaerica|type=transcript|length=24116bp|location=Sequence derived from alignment at scaffold_266:219839..243954- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:219839..243954- >TCONS_00055991 ID=TCONS_00055991|Name=TCONS_00055991|organism=Clytia hemisphaerica|type=CDS|length=41580bp|location=Sequence derived from alignment at scaffold_266:219839..243954- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055991 vs. Swiss-Prot (Human)
Match: SCFD1 (Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4) HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0 Identity = 393/633 (62.09%), Postives = 504/633 (79.62%), Query Frame = 3
Query: 96 TLREKQIESLKRMLNLNEPLTSATLNVEPVWKVLVYDRFGQDIISPLLTVKELRELGVTLHLLVHSDRDAIPDVPVVYFVFPTEENIQRICRDMKNGLYEKYYLNFISPISRHLLEDLASSSLQYDCVDVVTKVMDQYLNFISLENDFFTVKHHDRDSISYYALNKADARDSEIENICDTMVNSLFSFLVTLGSVPIIRCPKGNAAEMVAETLDKKLRENLRDSRNSLFTSD-IQSGNFSFHRPVLIILDRNNDLCTPLHHTWTYQALCHDVFDLQLNRVTVDEPSSSEQSFGDARP-RKQVKKYDLSVKDKFWQQHRISPFPTVAESIQKELDDYRSSEEEVKKLKSMMGVQNEEDEVVEAMWSENTNKLTSAVSSLPELLEKKRVIDMHMNIATAMLEHIKQRKLDVLFECEEKIMSKSTLETTVLEIINDPEVGSPEDKLRLFLIYYISTPNV-SQAELDQHVEALTNVGCDVSCISYMKKWKAFNKVASGPIQTGSGQSTYSAMFNRIMSTGSKFVMEGVKSLVVGTKNLPVTRIVDHIMEQKNSPEIDDYRYFDPKMLKQNENA--QQKKTFQEAIVFVVGGGNYIEYANLLSYVKRQTNTPKSITYGCSELLSASQFMKQLQTLGQE 1979
++RE+Q +LKRMLN N P + EPVWKVL+YDRFGQDIISPLL+VKELR++G+TLHLL+HSDRD IPDVP VYFV PTEENI R+C+D++N LYE YYLNFIS ISR LED+A+++L V V KV DQYLNFI+LE+D F + + +++ +SY A+N+ D D+E+E + DT+V+SLF F VTLG+VPIIRC +G AAEMVA LDKKLRENLRD+RNSLFT D + +G FSF RP+L+++DRN DL TPLHHTWTYQAL HDV D LNRV ++E S E S ARP RK K YDL+ DKFWQ+H+ SPFP VAES+Q+EL+ YR+ E+EVK+LKS+MG++ EDE +M S+NT KLTSAVSSLPELLEKKR+ID+H N+ATA+LEHIK RKLDV FE EEKIMSK+TL+ ++L+II+DP+ G+PEDK+RLFLIYYIST S+A+L+Q+ +ALT+ GC+++ + Y+K+WKAF K+AS P GS + + +R+M+TGS+FVMEGVK+LV+ +NLPVTRI+D++ME K++PE DDYRYFDPKML+ N+++ + K FQEAIVFVVGGGNYIEY NL+ Y+K + K I YGCSEL +A+QF+KQL LGQ+
Sbjct: 14 SIRERQTVALKRMLNFNVPHIKNSTG-EPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEG-EDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQG--KHILYGCSELFNATQFIKQLSQLGQK 642 The following BLAST results are available for this feature:
BLAST of TCONS_00055991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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