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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056003 ID=TCONS_00056003|Name=TCONS_00056003|organism=Clytia hemisphaerica|type=transcript|length=2326bp
ttcaggagaaataaacataaaaatggGGATATCTGGATTAACATCTTACA
TAAACAACCTACAGCAAACAATGTTTAAAGAAAGAATCAAGCTGAATAGT
TCTTGTTTGGTGATTGATGGATTTGCTCTCTTCTACGCATTGATGAAAAC
TGCAAGGCGACGTGAATTTGGTGGTGATTATGATTTGCTTCGAGAACAtc
tcaatattttcttttctaaactGAGCAAAATGGACATTCAAGTATATGTT
GTGTTGGATGGAGGAAACAATATTGATTTGAAGAAAGCAACTATTGAAAA
GCGAAAGGTTCAAATGATTGAGAAAGTAACAGAATTCAATCGTTTAGGTC
TTGGATACCGACAGATTGGTGATTTGCCAATTCCACTTCTCTCTATGTCC
TTGTTTCGTGAAGTAATGGAAATTCATGAAAATGTCAAGTATATTGTCTG
TGACCAGGAAGCAGATTTGTTGGTGGCATCTTTGGCAAACCAATTGGATG
GATATGTGGTGACCAATGATAGTGACTTCTTTCTTTTGGACCTCAAGAAA
GGTCTTATTACCATCACCTCACTATGCGATTCCATCAAACAAAGCCAGCC
TTACTGCACGATCTACAAGCAACAAAATCTTTCACAATACCTTGGAATCT
CTCCTGATCTTTTACCAATAATAGCTTTGGTGTTGGGTAATGATTACAGT
GTGGATTGCTACAGATTACAATTGCTGTCTCTGATGGGTATCCAACCAAG
AGATAAAATTGATGTCAAAATAGAACATATTATGAAATATCTCAAGGGTG
CAGTATCTGTTGATCGACTTCTTCAAACTCTATGTTGTGGCAATGAGGAA
ATGCAATCCCAGCTCTCTAAAGAACTAGAAGAGTACAACGTTCATCAGTT
TGATGGTCTTTCTCAAGAATACATTGGCTATTTCGAAACGCAACAAAAAG
AAACAGCTGCTCGGAATTTTTTCGATAGcaaaaacaaactgaaaaatttt
attgatcAGTTAGTTCGAGCTGGTCTAATCGACGCATGTGTATTAGACTT
GTTGAACTACAAAACTCACTTTGTTAATGTGCAGTGTGAGCTTATTGCTA
AACGTTGTACGTCGGTTTGTTCAAGTGTATTGAGGAGATACCTTTATGGA
ATGTTGCTCAAGCAGGATGAAATTGTTGTTGAATATACAAGAAGTGGTCA
GCAATATCGTCCAAAGATGGTTCGACCTTCAAATGATTTGCCTTCTCTCG
ACGAGTTGTGGAGCAGATCTGAAGAAGAGAGACAATCCTTTTTTTTAGAC
CTTCTAGATATCCCATTGGAAGGACGCGGAGCCATCATTTCACCAGCTCA
TCAATCTTCATTGTTTATCATCACATTACAGTATTTCACACAGGTTCACT
CAACTTCTGAAGATCAAACCAATGCATTCCTTGAGATGCACTTGATATTG
AGAAATGGTAACAGATGTTTTGATGTACCACACCTTGATCAAGCTATGTT
ACATGTTTACAGTTCTTTTCATACAGTGTTTTATTACATCAACTTGATCA
ATACCCTGCTTGGTGAACCTTTCGTTACCCCGAAGGCCTCACAGTTGATG
AGTGGTAGTGTGTTCCAAAGTCTTTGCCAACGAGGCAACAAAGACTTTAA
AGCTGACTATGCAAAAGAAGATCTTACTGACTTGGAGAcatatcaaaatt
tcattttaccAAATATGATGGATAAAGTGCAACCTAGGTCATCTTCCAAG
AAGAATAACCAACACCATCATCATCACCATAGACATCATCAAGGATTGAA
GAACAGCCAGTTATCAAACGATGTCTTGCCAAGGAAACCTGCTTCTCAAT
CCGGTAGAAAGAAGTCAACTTTCCCATCCACTAACAAGAAACCTTCTGCA
CAAGCCAGCAATAAGAAGCCATCTAACAGATTTCAACTCTTGTCCCTTTC
AGATGATGAGTGAAAGTTAGTTAGggactttgtttattttttatatagaG
AATGGTAACATACTTTGTCTTTCAGTTAGCCTTTACACAAGCTTTTTTTG
TTCTCATTCAGGCTGACAGGTTCCAAAATTTTGTGCTCAAATAATTTATC
TGTTGGCCAACCaattgttttgattcttttaGTTATATTTTTTTGAGTAC
AATAGTCAAGTCGGCTTGACCATCACATTTAcatgatattcttagcatac
aCACAGNAGTTCTATTTTTTGAGTACAATAGTCAAGCTGGCTTGACCATC
ACATTTACATACTATTCTTAGCATACACAAACTATTTTTATACGCTAGAG
TCGAttcatttttgatgttttttaca Run BLAST on NCBI transcript from alignment at scaffold_266:277339..279974- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056003 ID=TCONS_00056003|Name=TCONS_00056003|organism=Clytia hemisphaerica|type=transcript|length=2636bp|location=Sequence derived from alignment at scaffold_266:277339..279974- (Clytia hemisphaerica)
TTCAGGAGAAATAAACATAAAAATGGGGATATCTGGATTAACATCTTACA
TAAACAACCTACAGCAAACAATGTTTAAAGAAAGAATCAAGCTGAATAGT
TCTTGTTTGGTGATTGATGGATTTGCTCTCTTCTACGCATTGATGAAAAC
TGCAAGGCGACGTGAATTTGGTGGTGATTATGATTTGCTTCGAGAACATC
TCAATATTTTCTTTTCTAAACTGAGCAAAATGGACATTCAAGTATATGTT
GTGTTGGATGGAGGAAACAATATTGATTTGAAGAAAGCAACTATTGAAAA
GCGAAAGGTTCAAATGATTGAGAAAGTAACAGAATTCAATCGTTTAGGTC
TTGGATACCGACAGATTGGTGATTTGCCAATTCCACTTCTCTCTATGTCC
TTGTTTCGTGAAGTAATGGAAATTCATGAAAATGTCAAGTATATTGTCTG
TGACCAGTGAGAATTTTTCAATGTTTTTAACTTCTTTGCCTAGGTTTTTG
TAATTACTTTGTAACCATCTTTCGGTTTTAAACTTTGCTATCTGAAACAT
CTAATAAAATTCAATACCCCTCAATACTCTTTGGCACTCATTTAACGTTT
ATAAAAAAGATAAATATGATAACGTGATAGTGATAATATTTGTTTTTTTA
TGTTTAGGGAAGCAGATTTGTTGGTGGCATCTTTGGCAAACCAATTGGAT
GGATATGTGGTGACCAATGATAGTGACTTCTTTCTTTTGGACCTCAAGAA
AGGTCTTATTACCATCACCTCACTATGCGATTCCATCAAACAAAGCCAGC
CTTACTGCACGATCTACAAGCAACAAAATCTTTCACAATACCTTGGAATC
TCTCCTGATCTTTTACCAATAATAGCTTTGGTGTTGGGTAATGATTACAG
TGTGGATTGCTACAGATTACAATTGCTGTCTCTGATGGGTATCCAACCAA
GAGATAAAATTGATGTCAAAATAGAACATATTATGAAATATCTCAAGGGT
GCAGTATCTGTTGATCGACTTCTTCAAACTCTATGTTGTGGCAATGAGGA
AATGCAATCCCAGCTCTCTAAAGAACTAGAAGAGTACAACGTTCATCAGT
TTGATGGTCTTTCTCAAGAATACATTGGCTATTTCGAAACGCAACAAAAA
GAAACAGCTGCTCGGAATTTTTTCGATAGCAAAAACAAACTGAAAAATTT
TATTGATCAGTTAGTTCGAGCTGGTCTAATCGACGCATGTGTATTAGACT
TGTTGAACTACAAAACTCACTTTGTTAATGTGCAGTGTGAGCTTATTGCT
AAACGTTGTACGTCGGTTTGTTCAAGTGTATTGAGGAGATACCTTTATGG
AATGTTGCTCAAGCAGGATGAAATTGTTGTTGAATATACAAGAAGTGGTC
AGCAATATCGTCCAAAGATGGTTCGACCTTCAAATGATTTGCCTTCTCTC
GACGAGTTGTGGAGCAGATCTGAAGAAGAGAGACAATCCTTTTTTTTAGA
CCTTCTAGATATCCCATTGGAAGGACGCGGAGCCATCATTTCACCAGCTC
ATCAATCTTCATTGTTTATCATCACATTACAGTATTTCACACAGGTTCAC
TCAACTTCTGAAGATCAAACCAATGCATTCCTTGAGATGCACTTGATATT
GAGAAATGGTAACAGATGTTTTGATGTACCACACCTTGATCAAGCTATGT
TACATGTTTACAGTTCTTTTCATACAGTGTTTTATTACATCAACTTGATC
AATACCCTGCTTGGTGAACCTTTCGTTACCCCGAAGGCCTCACAGTTGAT
GAGTGGTAGTGTGTTCCAAAGTCTTTGCCAACGAGGTGAGTTTTTCAGAT
AAAATACAATACTTCATCCATGTTTTGTCATTCTTTAGTTCATGTCCAGT
CTTATTCATTCAATCGAATCGTTTATTTTCACCTTTCATACTAGGCAACA
AAGACTTTAAAGCTGACTATGCAAAAGAAGATCTTACTGACTTGGAGACA
TATCAAAATTTCATTTTACCAAATATGATGGATAAAGTGCAACCTAGGTC
ATCTTCCAAGAAGAATAACCAACACCATCATCATCACCATAGACATCATC
AAGGATTGAAGAACAGCCAGTTATCAAACGATGTCTTGCCAAGGAAACCT
GCTTCTCAATCCGGTAGAAAGAAGTCAACTTTCCCATCCACTAACAAGAA
ACCTTCTGCACAAGCCAGCAATAAGAAGCCATCTAACAGATTTCAACTCT
TGTCCCTTTCAGATGATGAGTGAAAGTTAGTTAGGGACTTTGTTTATTTT
TTATATAGAGAATGGTAACATACTTTGTCTTTCAGTTAGCCTTTACACAA
GCTTTTTTTGTTCTCATTCAGGCTGACAGGTTCCAAAATTTTGTGCTCAA
ATAATTTATCTGTTGGCCAACCAATTGTTTTGATTCTTTTAGTTATATTT
TTTTGAGTACAATAGTCAAGTCGGCTTGACCATCACATTTACATGATATT
CTTAGCATACACACAGNAGTTCTATTTTTTGAGTACAATAGTCAAGCTGG
CTTGACCATCACATTTACATACTATTCTTAGCATACACAAACTATTTTTA
TACGCTAGAGTCGATTCATTTTTGATGTTTTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056003-exon-scaffold_266-1575043694:279519..279974 | TCONS_00056003-exon-scaffold_266-1575043694:279519..279974 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1575043694:278140..279317 | TCONS_00056003-exon-scaffold_266-1575043694:278140..279317 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1575043694:277339..278030 | TCONS_00056003-exon-scaffold_266-1575043694:277339..278030 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1510915933:279519..279974 | TCONS_00056003-exon-scaffold_266-1510915933:279519..279974 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1510915933:278140..279317 | TCONS_00056003-exon-scaffold_266-1510915933:278140..279317 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1510915933:277339..278030 | TCONS_00056003-exon-scaffold_266-1510915933:277339..278030 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1491911889:279519..279974 | TCONS_00056003-exon-scaffold_266-1491911889:279519..279974 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1491911889:278140..279317 | TCONS_00056003-exon-scaffold_266-1491911889:278140..279317 | Clytia hemisphaerica | exon |
| TCONS_00056003-exon-scaffold_266-1491911889:277339..278030 | TCONS_00056003-exon-scaffold_266-1491911889:277339..278030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:277339..279974 - |
Blast
BLAST of TCONS_00056003 vs. Swiss-Prot (Human)
Match: ASTE1 (Protein asteroid homolog 1 OS=Homo sapiens GN=ASTE1 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 6.935e-23 Identity = 77/234 (32.91%), Postives = 121/234 (51.71%), Query Frame = 2
Query: 23 MGISGLTSYINNLQQTMFKERIKLNSSCLVIDGFALFYALMKTARRR-EFGGDYDLLREHLNIFFSKLSKMDIQVYVVLDGGNNI-DLKKATIEKRKVQMIEKVTEFNRLGLGYRQIGDLPIPLLSMSLFREVMEIHENVKYIVCDQEADLLVASLANQLDGYVVTNDSDFFLLDLKKGLITITSL----CDSIKQSQ---PYCTIYKQQNLSQYLGISPDLLPIIALVLGNDY 697
MGI GL S++ + F + +KL + +VIDG+ALF+ L ++ +GGDYD + + FF L +I YVVLDGG +I D K T++ R + I+ + G GY PLL +F +V+ I V ++ C EAD + +LAN + V+++DSDF + DLK G + S ++IK +Q P + ++ LLP+ A++ GND+
Sbjct: 1 MGIRGLMSFVEDHSNEFFTD-LKLRDTKIVIDGYALFHRLCFSSNLDLRYGGDYDSFADVVQKFFESLFACNICPYVVLDGGCDISDKKLTTLKDRAREKIQMAHSLSVGGSGYV------CPLLIREVFIQVL-IKLRVCFVQCFSEADRDIMTLANHWNCPVLSSDSDFCIFDLKTGFCPLNSFQWRNMNTIKGTQNYIPAKCFSLDAFCHHFSNMNKALLPLFAVLCGNDH 226
The following BLAST results are available for this feature:
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