TCONS_00056008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056008
Unique NameTCONS_00056008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056008 ID=TCONS_00056008|Name=TCONS_00056008|organism=Clytia hemisphaerica|type=transcript|length=875bp
CTAAAGAACAGTTTTTCTGAACTGAATTTTCTACTGTGTGAGTGTGACCA
AGATGGaagaaaatccataatggctacCCAAGCGAGAAAGAAAGTGTATC
AAAATCCTAGAAAGTTTGTTTTTTCTGTTGGACTATTTTCaggttttctt
tgatttcatgaattaaaatggCTAGTGAAGGAGGAGAAACAGCGACTGCT
TCAGATTTGGAACAGCAATTTCACAGTAAAGGTTATGAATATCTAGATCA
TCCAGCAGATGTTCAAATCCACTCATGGGGAGCAAGTCTCAAAGAGGCAT
TTGAAGAAGCAGCAGTAGGCATGTACGGAATTATGACAGAAATCGAAACA
GTTGACCCAATACAAGAAGAAAATGTAGAGGCAAATGGACATGACATTGA
ATCACTACTATTCAATTTCTTAGATGAAtgtctttttgtattttgtgcAG
AGCCTTACATTTGTGCTTGTCGTGTAGAAATAACAGAATTTGATGAAACT
AACTTTACTATAAAAGCAATATTGAGGGGAGAACAATTTAACCTGGATAA
ACATCCGCAAGGGACTGAAGTAAAAGCAATTACATACTCAAATTTGCAAA
TTCATAGGAATGAAAAAGACTTTGAAGTCTATGTTATTGTTgatatttag
tatattttttaaaattttatgtcttAGAATCTGATTTTCAATTGTTTAAG
TGTGCTATAATTTGCAGATCCAAAATGACAAATCAATTTCAATATCAAAT
TGTCTACATTGTAATAACAACATCATCAAATACTACAAAATACCACTATC
TAACTTCTATATTATTGATTTTAAGAAGTTCTTTTCTTAGAAAAGGTATT
ATTTCTGCTtactttttaaaataac
Run BLAST on NCBI

transcript from alignment at scaffold_266:347233..352924-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056008 ID=TCONS_00056008|Name=TCONS_00056008|organism=Clytia hemisphaerica|type=transcript|length=5692bp|location=Sequence derived from alignment at scaffold_266:347233..352924- (Clytia hemisphaerica)
CTAAAGAACAGTTTTTCTGAACTGAATTTTCTACTGTGTGAGTGTGACCA
AGATGGAAGAAAATCCATAATGGCTACCCAAGCGAGAAAGAAAGTGTATC
AAAATCCTAGAAAGTTTGTTTTTTCTGTTGGACTATTTTCAGGTTTTCTT
TGATTTCATGGTAAGAAGATTGTTCTTTTCTTTTGCTCGAAAGATCTATC
CCAGAAAAAGAAAAACTTAATATAGATCCATGGCTTCGTTATATCAAAAT
AGTTTCCTCTGCCATGCTCATGCATGATACGCGGTGCAGTAGTGTTTGTG
TTGATAGATGGCATGGGATGTAGCCATAAAGTTTGCCCCCTTGTGTCTAC
ACATAGCATAGGGCAGTAGGGCTGTGTAATAGCAGCCCTATAGGGAATAG
GGGCAGGGTTGGGAGCTATTATATATAGGGTCTGTAAATTACCGTGAGTG
GTCCTAAATCCGACAGCCCTGTGCCTAAAATCCGACCCCCCAAATAACTG
CTATGAAAAAAATTCTATGTTTACAAACATTCCCTCTCCAAGTTGAACAA
TAAACTATATTGCGAGAACTCTCGAATGAAAANGACCCCTAAGCCAATGA
CACGTCAAATTTTTTCGAAAATCCTTTTCATTCAGACAATCAAACAAATA
CAATAGTTAGTTTAGCTTATTGCTAGATAGAATAAATGCCCTACTAAGAA
ATAGGAAATAAGCTAATTATTGCCAGATTATCAAGGTTTTGTAAGTCAGG
GGGCAAATCCCTTGTCAGACAGATTTTTTATCTAAGTAATGCAACATAAT
TAAAGAATTTTTACAGATATATAATATATTAGATACCAAATTTTCAGTTT
TTTAGCATTGCTTAGATTGGGCGGTTCAAGTTATAGTCCGTTAACCCCAT
GTGAACAACATGGATTTTTCGTAACAATTTACTTTTGAAAAACTTCAGGA
TTTCCGTAACATTCAAGATTTTTTACGAGAAAATCTTGGATTTTCCAAAA
CTTGGCAAGAAAATAGAGCAAATTTTATGGATTTTCCAATACATATGACT
AAATAATGAGGAAAAATCCTGGATTTCCGAAACCTTTTTCAAATTTCTCA
GGATTTCCAAGTGAAAAAAAATCCCAAAAACCCTGTCGTCCACAGCCCAA
TAAAATATAAGATGAGAAAGTGCCAACCTATGGTCTGGTAGGCTGCTTAT
GATGAAAAGCAAGTTCAGAAAAAAATCACCAAACAGAGAATCTAGCCTCC
AGGCAGATCCATCTGAAAAAATTTAGGTGACCCCTAACATGGTTAGTCCC
CCCTAGCCACAGGCCAAAATTAGGTACCAATCGCTGTTCGACCTTTTAGC
CCCCCCCCTCAGGCCAGGGGGGGTTCCAGCCATGTGTCAGGTATGTGCGA
GCCATAAGGGTACCTTTTCTCATTCCTCAAAAGTCTCTCAAAGGGGTACA
AATTCAAAAGTTAGTCTCTGAAAGGGTCCCAAAATCACGAAAGTCAAAAA
TTTTGATCAAAAATTGATGAAAATCAAACCAAGATTTGGAAAAAATGGAC
CAAAATTTAGGAAAAAGTCTCTCAAAGGGTCCCAAAATCACGAAAGTCAA
AAATTTTGATCAAAAATTGATGAAAATCAAACCAAGATTTGGAAAAAATG
GACCAAAATTTAGGAAAAAGTCTCTCAAAGGGTCCCAAAATCCCCAAAAT
TTTGTCTCTCAAAGGGACGATTTTCGATTTTCGGCTCGGACATACCCGTC
CCCTTGCAAACCTAGTCCCCCCCCCCCCGGAAAAATAATTACCCAATATT
ATTGTGAATCTGTTGCTCGTGTTTAAAACATTAACAATTTTTTAATAAAA
AATTATGCTTTTTATAAGAAGCAATTAATGTTTTGGCTCAATTGGTTCAG
TGTAATCTCTCAGTTTAGTTGACACTTTGGTATCTTCATTGCGTTACAGT
ACAGCAAAAAGTTTGTTTTTATTTCAGTTTGTATCTTTGAAAGACCCCAT
CGGATTTGGGGAGGGTTGTCGGTAGACAGGAGGTTGTCGGATTTAGGACC
ACTCACGGTACACTCTATAAGTATAAGTTTGTTTTGTTTTCTTTTAACCC
AACTGGTATGATTTTGCTTTGGAATCCATGCGTTTGGTGGTTCGAGCAGT
TGACGCTTGGGAGATTATATTAGAATCAGTTTTGAAAAGAAAGAAAATAA
CTCAGAAGCAATTCAAAGACTCAGACATATTCAAAAGTAGAATGAAAGAT
TGGAAATAGAGAAAGTACAGTAACTTGGTCGACGACATCCCTCTTCTAAT
ATTGTGGGGAGTCATTTACAATCTACACAGCACCGTTGAATGTCAAACAT
ACCTCATCTAATTCCGACACTCTTCTTTATAGGATGGGAATAATAGGGAG
GTCGGAATCGCTGATTGAAACTATATATATTCTTTGCTTAGAGGTCAGAG
AGGAAATAACCTTTTGTCTCACAGCTCTTAAAACTTTTGTCTTAAACAAA
AATCTTAAACAATGAACTTCACTAACTTCTAAAAGCAACTTTGCTATCAA
CCTTTCTACTTTTAAAATACTTAGAGATCCAGTCCAAAAGTACAAAATAT
TCCTAAACCTTACCTTCTTTTTGGATAATTTGAACTCTGGGATCATTTAA
TTGCATTTAAGGACAAAATAGGTTAATAGCAAAATTGTTTTTTGGGTTTG
GTAAAGCTCACCTTTGAAGATTTGAGATTTTAGAAACACATTTTGACAGA
CTTAATCTTTTTAAATGGTAGATCAGGAGGTAAAGATCTTGATGAAAGTT
TGTACTATCCCCATGAAACTTTCCAAAAACCAAGATTTCATTGTCTTAGA
GGACTCATTTTCTGTTCAATCTTGATCAAAAATTGTTGCTTTTAACAGCA
TTGTCAAGATTTTTAGGATTTTAGAGTTAAGACGGATTTTGAGCTAGCCC
TAATATTTATAAAAGAAAGAAAACGGGTTCCAACTTTTGATAAATTGTTG
CACTATCTATAGGATGCTTTCACAAAATTAAGAAACATGTATCAATGGGT
ACTCATTTCGGGCAAAAATTTCAGCCAAAAATGTACTTTTAAGTCAATTT
TGCAAAATTAAGGGGGTCAGGAAAGTTAGAAGAATCATGATTTTCAGATC
AAATTTATTTTCTAACTGCCAGTTATTGGCTGCAATATAATGACTCTAGT
CAAAAAGTTGAGAAGAAAAGCCTTTTTGGCCCAAGAAAGCACATTTGACA
ACTTTTTTCACCTAGTTTCATGGTTTTGATATGAAAGATTCATCATACAG
TATCCCTTATATTACAACAAATTCAGTGACCTAGACCCGTTTAAAATCTG
TCAATGGGCTAAAATATCCCAAATTTTAGTCATTTTTTGAGCAATATTAT
ATTAAGAAAGCTTTTAAATCAAGATTAAAAATTAATGGTAGGAGGTCACA
TAGGTTTTTCTTTTAATCCTGAGATACCAGACAATTATCTTTTAGGAACA
GAGGAGTTGGAGGCCAGAAAATGTTCAGATTTCTAGGAAAATTAGGCTAA
AGTTGGTACTTTTTTAGACCTAATTGGCTTTTCAGGCCTCTAGGGGCCAG
CAAGGCTGTAATTTTTTATTGCAACCACTTCGAATGGATAGACCAGGGAC
TGAACTACAAGGAATTATTATTTTGAACAGGAACAAATTCCTCTGGGACT
GGTCAGATGGCTTTAAAATACCCATAAAATCAAATTTGTAGTGTTTTTGT
GACGTCATAACTAAGAACATATCTAAAAATTAAAAAAATCTAAGTTTCAA
ACTATTGGACCTGCCCCGCTCTTAAAAAACTGGCTCTTAAGGGGTCACAT
ATTGATTCTTCCCACGGCTAACGTCAAATTGACGCGAAGGGGTGGGGGGT
TAAAGTCTGTGAAGCTAAGAAATTTCACCAGAAATATTGATTTTTTGAGA
CGTTTATTCTGTGACAAATGTTACTTTCCAAATTTCTTTTCCTCCTTTTA
TATACCTAAGTATTTGTTTGCTTCGCTATTTTATAGAACAATTTTAACCA
AAACAAATGGACCGATGTTTATGTCTCGTGTTCCTTTTGTTTAGATGGTC
TGCGCGGCCCTTGAATTTCACGGACGGTCGGTCTTTTTTTTGTGAAATGT
CGCTATTCTGTTGATTATGATTACGGAGATATGATTAATTCCAGCAGCTT
TGCAAAAAAAAGTTTAGGGGTTTTCAAATTATTAATTATTAATTTGACGT
TATTCGTGGGAAGAATCAATATGTGAGTGACCCCTAAGTAATAGATGTCA
GATGTGCTCACGAAAAAAATTGAATAATATTGCGGAAATAGATTTCAGAT
TTTTTAAATTGATTATTGACTCCATTGACAATATTTGCCAAATAGAGCCA
GAATTGGTATTTTTATTCAAAACACCTCACTGCCAGGCCAAGACACTTGA
AAACTTTTTTCTCAGTGACACTTTAAAAGGATTAATTTTCCATGAGACTC
ACAATATATTTTTGTGAATAATTGTTTTCAAATATTTTGTGTGAAAAAGG
CAATAGTTCGGCTAATTTGAAACTCAGGTCAAAGGTTACAGGTCAATAGG
TCACATATTATAAGCCAGGGAATTTTCTAAGCACTTTGAGCTGGAACTGT
TTTTTGTAAATTTAGATTGAGTTTCTAATAATGCCTGAAAGGGAACATGA
AGCTGGAGGTCTGGGCGCTGTTTGAAAATTATCTTTGTCTCTATTTGCCT
TTTTTACAGTATAGCAGACTAGATTTATTATGATTAAGCTCTGAAACTCT
AGTATACCATTTAAGTTTTGTTTTGTTTTCAAATCAAAGTTCTACAGAAC
TTAAAGGTGTTCTGNCTGAAACTCTAGTATACCATTTAAGTTTTGTTTTG
TTTTCAAATCAAAGTTCTACAGAACTTATCCAATCTTCAAAAGTTAATAC
TTTGGTATAATATTTTTAAAACAAAAGAATTAAAATGGCTAGTGAAGGAG
GAGAAACAGCGACTGCTTCAGATTTGGAACAGCAATTTCACAGTAAAGGT
TATGAATATCTAGATCATCCAGCAGATGTTCAAATCCACTCATGGGGAGC
AAGTCTCAAAGAGGCATTTGAAGAAGCAGCAGTAGGCATGTACGGAATTA
TGACAGAAATCGAAACAGTTGACCCAATACAAGAAGAAAATGTAGAGGCA
AATGGACATGACATTGAATCACTACTATTCAATTTCTTAGATGAATGTCT
TTTTGTATTTTGTGCAGAGCCTTACATTTGTGCTTGTCGTGTAGAAATAA
CAGAATTTGATGAAACTAACTTTACTATAAAAGCAATATTGAGGGGAGAA
CAATTTAACCTGGATAAACATCCGCAAGGGACTGAAGTAAAAGCAATTAC
ATACTCAAATTTGCAAATTCATAGGAATGAAAAAGACTTTGAAGTCTATG
TTATTGTTGATATTTAGTATATTTTTTAAAATTTTATGTCTTAGAATCTG
ATTTTCAATTGTTTAAGTGTGCTATAATTTGCAGATCCAAAATGACAAAT
CAATTTCAATATCAAATTGTCTACATTGTAATAACAACATCATCAAATAC
TACAAAATACCACTATCTAACTTCTATATTATTGATTTTAAGAAGTTCTT
TTCTTAGAAAAGGTATTATTTCTGCTTACTTTTTAAAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035248XLOC_035248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056008-exon-scaffold_266-1575043694:352765..352924TCONS_00056008-exon-scaffold_266-1575043694:352765..352924Clytia hemisphaericaexon
TCONS_00056008-exon-scaffold_266-1575043694:347233..347947TCONS_00056008-exon-scaffold_266-1575043694:347233..347947Clytia hemisphaericaexon
TCONS_00056008-exon-scaffold_266-1510915933:352765..352924TCONS_00056008-exon-scaffold_266-1510915933:352765..352924Clytia hemisphaericaexon
TCONS_00056008-exon-scaffold_266-1510915933:347233..347947TCONS_00056008-exon-scaffold_266-1510915933:347233..347947Clytia hemisphaericaexon
TCONS_00056008-exon-scaffold_266-1491911889:352765..352924TCONS_00056008-exon-scaffold_266-1491911889:352765..352924Clytia hemisphaericaexon
TCONS_00056008-exon-scaffold_266-1491911889:347233..347947TCONS_00056008-exon-scaffold_266-1491911889:347233..347947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:347233..352924 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2618	15.584	9.01708	9.11684	9.80581	7.83383	7.29385	8.71985	6.14986	5.6715	4.0747	3.40583	3.66681	3.4033	3.62981	5.01525	6.59827	7.29585	2.88798	3.34797	5.48521	4.37123	19.4839	15.8258	5.23321	4.51738	12.9287	8.1462	15.6682	18.7043
Blast
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BLAST of TCONS_00056008 vs. Swiss-Prot (Human)
Match: ARCH (Protein archease OS=Homo sapiens GN=ZBTB8OS PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.552e-44
Identity = 67/130 (51.54%), Postives = 96/130 (73.85%), Query Frame = 3 
Query:  225 SKGYEYLDHPADVQIHSWGASLKEAFEEAAVGMYGIMTEIETVDPIQEENVEANGHDIESLLFNFLDECLFVFCAEPYICACRVEITEFDETNFTIKAILRGEQFNLDKHPQGTEVKAITYSNLQIHRNE 614
            ++ YEYLDH ADVQ+H+WG +L+EAFE+ A+ M+G MT+  TV+P+Q   VE  G D++SLLF+FLDE L+ F A+ +     V++   D+ NF +++I  GE+F+L KHPQGTEVKAITYS +Q++  E
Sbjct:   28 NRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLSIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEE 157
The following BLAST results are available for this feature:
BLAST of TCONS_00056008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARCH8.552e-4451.54Protein archease OS=Homo sapiens GN=ZBTB8OS PE=1 S... [more]
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