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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056027 ID=TCONS_00056027|Name=TCONS_00056027|organism=Clytia hemisphaerica|type=transcript|length=7265bpRun BLAST on NCBI protein sequence of TCONS_00056027-protein >TCONS_00056027-protein ID=TCONS_00056027-protein|Name=TCONS_00056027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2135bp MNSSNALNNACQKGKLKKVKEILERNPTDVNVNAGVFGFTPLHEATSSGRRun BLAST on NCBI transcript from alignment at scaffold_266:418639..440398- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056027 ID=TCONS_00056027|Name=TCONS_00056027|organism=Clytia hemisphaerica|type=transcript|length=21760bp|location=Sequence derived from alignment at scaffold_266:418639..440398- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:418639..440398- >TCONS_00056027 ID=TCONS_00056027|Name=TCONS_00056027|organism=Clytia hemisphaerica|type=CDS|length=64080bp|location=Sequence derived from alignment at scaffold_266:418639..440398- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056027 vs. Swiss-Prot (Human)
Match: LRRK2 (Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens GN=LRRK2 PE=1 SV=2) HSP 1 Score: 245.358 bits (625), Expect = 1.364e-64 Identity = 182/626 (29.07%), Postives = 301/626 (48.08%), Query Frame = 1
Query: 1108 KKLNLGWNHLTRLPSN--------------MNRLA-------NLVRLNLQKNRLQNIPGYVFTLPALRNLNLSGNLIQKLP-IVEWSPSXXXXXXXXXXXXTFPENIKGA----TIEYLNIANNKLETFPLGICSITTLRNLDISDNKDIRELPIELGYLSKLVDFTFKGLVIKDPPTNVQRPAKTLISHLRARLRAAEPYYCMKLLIIGQAAQGKTTLMHRL----KGDVNYSDDISTQGIDIQEIKLPRKAFGNQQTQFTFRVWDFAGQDDYYATHQCFLSRRSLYLLIWDSQELSNGVNGLKLWLDNLTTRVPGATIIVIGTMLD------------KVPPGVLQKNFVPHMREAVENLFTSDARYYKINLAGVEFVSSNVKYKDYSKMMEGLRQLIYQVASEMEYCDPRNGKPTGDLIMGEKIPHSYRLFEDRLRERQREKAQETKGIPILMRDEFMMLAKESPNNNEKDRLHSEDIADVTKFLHNIGTILHYNDPNYDLKDMYFINPSWLCRLMSKIITVDAVHA-RIKNGILSIDDLKNFIIRDDIDFPNMFYNRYLRLLFRFQIACPIDSNRVLVPSKLPEGSARI-VKEPAQTTLLIRRHTFHCIPFGFWERFVSRLL 2853
K LNL NH++ L N MN LA ++ L L +N+ IP + LP LR+L++S N IQ LP W L + I+ + + A +E L++++NKL+ P I + L +LD+S N ++R P E+G LSK+ D L + ++ AK +I L+ RL+ A PY MKL+I+G GKTTL+ +L K D+ +T GID+++ P + ++ VWDFAG++++Y+TH F+++R+LYL ++D + V+ +K WL N+ R + +I++GT LD K+ +L K P +R+ Y+ +N + S + LR+ I + N K L++G+ IP Y E + ++ E P++ R + L +E+ + +L ++ FL+ G +LH+ DP L D+YF+ P WLC++M++I+TV + GI+S D++ F+ + FP + ++Y +LL +FQIA PI +LVPS L + I + + ++IR + P GFW R ++RLL
Sbjct: 1132 KILNLSKNHISSLSENFLEACPKVESFSARMNFLAAMPFLPPSMTILKLSQNKFSCIPEAILNLPHLRSLDMSSNDIQYLPGPAHWKSLNLRELLFSHNQISILDLSEKAYLWSRVEKLHLSHNKLKEIPPEIGCLENLTSLDVSYNLELRSFPNEMGKLSKIWDLPLDELHLNFDFKHIGCKAKDIIRFLQQRLKKAVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS--ATVGIDVKD--WPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD-----------YHFVNAT------------EESDALAKLRKTIIN--------ESLNFKIRDQLVVGQLIPDCYVELEKIILSERKNVPIE---FPVIDRKRLLQLVREN-----QLQLDENELPHAVHFLNESGVLLHFQDPALQLSDLYFVEPKWLCKIMAQILTVKVEGCPKHPKGIISRRDVEKFLSKKR-KFPKNYMSQYFKLLEKFQIALPIGEEYLLVPSSLSDHRPVIELPHCENSEIIIRLYEMPYFPMGFWSRLINRLL 1713 HSP 2 Score: 167.162 bits (422), Expect = 7.022e-41 Identity = 182/745 (24.43%), Postives = 326/745 (43.76%), Query Frame = 1
Query: 4132 EEIIETKVSNSSIGHRVLGYIIDHIRTLIKEWYPGLSGND--GE-RAFVNQFAACPVCIQLGIRKPYMFDIKDAFAKIYI------ARNGDKCLSCEAEKRHSPQVVDVEQLCPELLFKDLSEDLQIARSKLEFEENEDYLIGNGAFGKVYRGNYIISDDKQIEVAIKFYNFEDYVLSAQDVFHDIRQEIFVLSKLREHKFIVRFVGFLTEPRLSALMELACHGNLKDALYDQSGKKKEINRVVLFRVVKQIASALDFMHKRRIIHRDIKSDNILVFQIDHQTGDIHIKLTDFGTANFLTPDGMKFVAGTPGFMAPEMFEFISSDEYTIKVDIYSFAMVI-------GEMINGRR---PFHDIQYEHQIPQALRDRDRPSYVDTKESLYGLLP---LTDLMTKMWKHESTKRPTAHQVLTQSQHPAFQLFYGKRTLEPVQNPKHLCAVPSTHN-----LWAVCDHLSGVSVIILNMKTSEVKTVWNIDGQAYGMDSYNPMHVVLITETHIAI-----TLLGTADDQIRIFTTDGKNPSH--EVIED-------NHIKAMAVHKDHVYVGYQSGQLGRVTIKNF-LKGKLTKEGVQVLINQDRPVMSMV----FNEKYVI-ASSGGYVYQYPCAFVKDEKTD-RLKRLHHQQRILDMKLLS---DGENFVAQFQCASEVQIVNTNSLEVLQKIDVEDKVRE--LKPNCD-----PWDHRVWTLCPAHDT-LWLGMGSGHIFIYDIS 6189
E ++ V + G +LG ++DHI +L++EW+PGL D GE + ++A Y F+ + KI + A GD ++ + + P + Q+ P+L+ DL ++ + +LEFE+ ++L+G+G+FG VYR Y + EVA+K +N +RQE+ VL L H ++ + PR+ +MELA G+L D L Q K + R + R+ +A L ++H II+RD+K N+L+F + + I K+ D+G A + G+K GTPGF APE+ + Y + D+YSF +++ G ++ G + F +++ + ++P +++ YG P + L+ + K +RPT+ QV + A + +R L P +N C V + HN +W C H + L++ T + Y + ++ + H+ + + GT + + T+ H E + D N + K+ + VG G+L K LKG + + + N P+M + E+ V+ G ++ + F + + R +L D +++ D ++A+ Q + V++ + + ++ ID +RE +K N + + RV TLC +T LW+G G GHI + D+S
Sbjct: 1760 ESFLKITVPSCRKGCILLGQVVDHIDSLMEEWFPGLLEIDICGEGETLLKKWAL------------YSFNDGEEHQKILLDDLMKKAEEGDLLVNPDQPRLTIP----ISQIAPDLILADLPRNIMLNNDELEFEQAPEFLLGDGSFGSVYRAAY-----EGEEVAVKIFN-------KHTSLRLLRQELVVLCHLH-HPSLISLLAAGIRPRM-LVMELASKGSL-DRLLQQD--KASLTRTLQHRIALHVADGLRYLHSAMIIYRDLKPHNVLLFTL-YPNAAIIAKIADYGIAQYCCRMGIKTSEGTPGFRAPEVAR--GNVIYNQQADVYSFGLLLYDILTTGGRIVEGLKFPNEFDELEIQGKLPDPVKE-------------YGCAPWPMVEKLIKQCLKENPQERPTSAQVF-DILNSAELVCLTRRILLP-KNVIVECMVATHHNSRNASIWLGCGHTDRGQLSFLDLNT-----------EGYTSEEVADSRILCLALVHLPVEKESWIVSGTQSGTLLVINTEDGKKRHTLEKMTDSVTCLYCNSFSKQSKQKNFLLVGTADGKLAIFEDKTVKLKGAAPLKILNI-GNVSTPLMCLSESTNSTERNVMWGGCGTKIFSFSNDFTIQKLIETRTSQLFSYAAFSDSNIITVVVDTALYIAK-QNSPVVEVWDKKTEKLCGLIDCVHFLREVMVKENKESKHKMSYSGRVKTLCLQKNTALWIGTGGGHILLLDLS 2440 The following BLAST results are available for this feature:
BLAST of TCONS_00056027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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