TCONS_00056032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056032
Unique NameTCONS_00056032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=transcript|length=862bp
ATGAGATATAAAATATGATATCCTAAAACAGTAATATCAAGCCTTCTTAC
TAAAGATGaaggagaaagaaaaagaagataaaaCTCGAGATGAGGAGAAA
ACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTACTTGTG
CGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACTATAAGA
AAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACATGAAGTG
TTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCTATCAAT
GAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGCCCTCAG
ATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATttcCATGTGAAT
GTGCAAGAAGAATTATCAACAATCCCTTATAATCCTGACGACAAGGTTCT
GACCCTCAGAGCGCAATTTATCCCTATGGATCAAAAGACCATgaccaaat
ttcaaaatgatCAATATGATTCAGATTCATTAATCCATCTGAAAGGTTTG
AACTCATGGCTCCAACCCAACATTGAAATTGCTAATTTCCCAGCAGCCAA
CTTCAGCATCTTCCTGCCACCTAATAATAGATGGAGATCGAAAAAAGTGG
GAGATACTTGGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCT
TACTTTGGTAATTTTCTCTTAAATTGAATTTATTAGTTCTTAGGCTGTCC
AGATTTCATTCTTGTACAATTTGCTTGTCGTTTTCGGTAGGAAATGTTTG
TTGAGTTACATGATATTGTAACAAGTAAAACTCCCAATAGCTCAATTTGg
gctttttaaaat
Run BLAST on NCBI

protein sequence of TCONS_00056032-protein

>TCONS_00056032-protein ID=TCONS_00056032-protein|Name=TCONS_00056032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MKEKEKEDKTRDEEKTEDERPSKRSKKWYYLCAVVALIAAVVVGYNYKKR
SPYIFDRSQAVSHEVFSKFQEFDTDNDGYLSMKEFELAYALLTKITPSDS
GLNIAEVELQNFHVNVQEELSTIPYNPDDKVLTLRAQFIPMDQKTMTKFQ
NDQYDSDSLIHLKGLNSWLQPNIEIANFPAANFSIFLPPNNRWRSKKVGD
TWDLISKVLGGRSGSYFGNFLLN
Run BLAST on NCBI

transcript from alignment at scaffold_266:577468..579270-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at scaffold_266:577468..579270- (Clytia hemisphaerica)
ATGAGATATAAAATATGATATCCTAAAACAGTAATATCAAGCCTTCTTAC
TAAAGATGAAGGAGAAAGAAAAAGAAGATAAAACTCGAGATGAGGAGAAA
ACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTACTTGTG
CGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACTATAAGA
AAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACATGAAGTG
TTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCTATCAAT
GAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGCCCTCAG
ATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATGTAAGGCCAATT
TAGAAACATAATTTATAGTTCATTCATCTTCTGTTTTTTTCTGGTTAGTT
GGTTAGGGCTTGTGTATATATATGTCAGTTTTGCTAGATAGAGTAGAATG
GTCTCCTCTTGCAAAAGATTTTACTATTTTACTTTGTTTGGAAAATTTGC
CTCGAAAATTTAACGCCACATGCGTGAATGCCTTATGAAGTTCGAATTGT
TTAAGAAGAGGTTTTCTTTAAAGATGTTGTCTAGAAAATGGTTGTAAACT
TGTGAGATACCAAATAACTTTGGCATGAATGCGCTTCTACTTGAGCTCAG
TCACGAATTCCTTTAAAGGGACATAAAAGTAGTAAAATGTAAACATTGTG
CGAACCACGTGTCATTAAAGAAAACTATTAAAATCACGTGTCCAAAACAA
ACTTGTGAAACAATTGAAACAATCAAAATCAGCCATATTGGTTTTTATTT
TTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCCGCTGCATACG
GTTTGTTTACAAATTTCGTCAGTACTTGTATGCCCTTTTAAGAAAAGATT
CAGTAGAAGGGACAACAGCCTAATAGATAATCATGTATTTCAATATTTTA
GTTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTTATAATCCTG
ACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATGGATCAAAAG
ACCATGACCAAATTTCAAAATGATCAATATGTAAGCTCCTTGTTGATGTT
TTTGAAACGACGGTTTTAAATTGAAATGTTTTTGGCTGTCTATCAGGCCT
GTCAACTGCTTTTCATATGTGACCTTCGGTAGAAATTCGGCAAATTCGGC
ATAGTTTTTTATTAAATACTCTTCAAGTTTTTTTAAGACGTTTGATAATA
ATTTTCACGAACCCTGTCTACTTTTTATCGAAATTTATAGAAAGCATTGT
ACGAAGGATCCTCCTTGACAGAGACTGAGAATTAGTTCCGAATAATAGAA
AAGTTTCGAATAATAGAAGCTTTAATTGATGAGTGTCCTCTGTATCCCTT
TTTTATAGGATTCAGATTCATTAATCCATCTGAAAGGTTTGAACTCATGG
CTCCAACCCAACATTGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCAT
CTTCCTGCCACCTAATAATAGATGGAGATCGAAAAAAGTGGGAGATACTT
GGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGT
AATTTTCTCTTAAATTGAATTTATTAGTTCTTAGGCTGTCCAGATTTCAT
TCTTGTACAATTTGCTTGTCGTTTTCGGTAGGAAATGTTTGTTGAGTTAC
ATGATATTGTAACAAGTAAAACTCCCAATAGCTCAATTTGGGCTTTTTAA
AAT

Coding sequence (CDS) from alignment at scaffold_266:577468..579270-

>TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_266:577468..579270- (Clytia hemisphaerica)
GATTCAGATTCATTAATCCATCTGAAAGGTTTGAACTCATGGCTCCAACC
CAACATTGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCATCTTCCTGC
CACCTAATAATAGATGGAGATCGAAAAAAGTGGGAGATACTTGGGATTTG
ATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGTAATTTTCT
CTTAAATTGATTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTT
ATAATCCTGACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATG
GATCAAAAGACCATGACCAAATTTCAAAATGATCAATATATGAAGGAGAA
AGAAAAAGAAGATAAAACTCGAGATGAGGAGAAAACAGAGGATGAAAGAC
CATCAAAGAGATCTAAGAAATGGTATTACTTGTGCGCTGTTGTAGCTCTT
ATTGCAGCTGTTGTTGTTGGGTATAACTATAAGAAAAGATCACCTTATAT
CTTCGACCGATCGCAAGCAGTTTCACATGAAGTGTTCTCCAAGTTTCAAG
AATTTGATACGGATAATGATGGTTACCTATCAATGAAAGAATTCGAACTG
GCGTATGCGTTACTGACAAAAATCACGCCCTCAGATAGTGGATTGAATAT
AGCAGAAGTGGAATTGCAAAATGATTCAGATTCATTAATCCATCTGAAAG
GTTTGAACTCATGGCTCCAACCCAACATTGAAATTGCTAATTTCCCAGCA
GCCAACTTCAGCATCTTCCTGCCACCTAATAATAGATGGAGATCGAAAAA
AGTGGGAGATACTTGGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTG
GCTCTTACTTTGGTAATTTTCTCTTAAATTGATTCCATGTGAATGTGCAA
GAAGAATTATCAACAATCCCTTATAATCCTGACGACAAGGTTCTGACCCT
CAGAGCGCAATTTATCCCTATGGATCAAAAGACCATGACCAAATTTCAAA
ATGATCAATATATGAAGGAGAAAGAAAAAGAAGATAAAACTCGAGATGAG
GAGAAAACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTA
CTTGTGCGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACT
ATAAGAAAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACAT
GAAGTGTTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCT
ATCAATGAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGC
CCTCAGATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATGATTCA
GATTCATTAATCCATCTGAAAGGTTTGAACTCATGGCTCCAACCCAACAT
TGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCATCTTCCTGCCACCTA
ATAATAGATGGAGATCGAAAAAAGTGGGAGATACTTGGGATTTGATTTCT
AAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGTAATTTTCTCTTAAA
TTGATTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTTATAATC
CTGACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATGGATCAA
AAGACCATGACCAAATTTCAAAATGATCAATATATGAAGGAGAAAGAAAA
AGAAGATAAAACTCGAGATGAGGAGAAAACAGAGGATGAAAGACCATCAA
AGAGATCTAAGAAATGGTATTACTTGTGCGCTGTTGTAGCTCTTATTGCA
GCTGTTGTTGTTGGGTATAACTATAAGAAAAGATCACCTTATATCTTCGA
CCGATCGCAAGCAGTTTCACATGAAGTGTTCTCCAAGTTTCAAGAATTTG
ATACGGATAATGATGGTTACCTATCAATGAAAGAATTCGAACTGGCGTAT
GCGTTACTGACAAAAATCACGCCCTCAGATAGTGGATTGAATATAGCAGA
AGTGGAATTGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035256XLOC_035256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056032-proteinTCONS_00056032-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056032-exon-scaffold_266-1575043694:578883..579270TCONS_00056032-exon-scaffold_266-1575043694:578883..579270Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1575043694:578141..578269TCONS_00056032-exon-scaffold_266-1575043694:578141..578269Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1575043694:577468..577812TCONS_00056032-exon-scaffold_266-1575043694:577468..577812Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1510915933:578883..579270TCONS_00056032-exon-scaffold_266-1510915933:578883..579270Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1510915933:578141..578269TCONS_00056032-exon-scaffold_266-1510915933:578141..578269Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1510915933:577468..577812TCONS_00056032-exon-scaffold_266-1510915933:577468..577812Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1491911889:578883..579270TCONS_00056032-exon-scaffold_266-1491911889:578883..579270Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1491911889:578141..578269TCONS_00056032-exon-scaffold_266-1491911889:578141..578269Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1491911889:577468..577812TCONS_00056032-exon-scaffold_266-1491911889:577468..577812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:577468..579270 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.95429	6.94047	3.19881	3.67119	8.27923	5.8476	10.7569	13.144	21.106	19.9619	18.2746	15.7761	30.5328	24.5413	25.6677	29.3994	110.611	112.578	20.4451	24.2952	21.8524	22.1375	17.3801	20.5017	22.4579	23.2188	36.0569	23.9313	27.2567	29.3063
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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